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Three methods of nucleotide character analysis are discussed. Their implications for molecular sequence homology and phylogenetic analysis are compared. The criterion of inter-data set congruence, both character based and topological, are applied to two data sets to elucidate and potentially discriminate among these parsimony-based ideas. c2001 The Willi Hennig Society.
The ionized gas in the Orion nebula is examined by means of axisymmetric modeling that is based on observational data from the ionized, neutral, and molecular regions. Nonsymmetrical features are omitted, radial dependence from the Trapezium is assumed, and azimuthal symmetry in the plane of the sky is used. Stellar properties and abundances of certain elements are described, and these data are used to compare the present axisymmetric-blister model to a previous spherical model. Strong singly-ionized emission that are visible near the Trapezium are found to originate in the ionization-bounded region in the dense Trapezium zone. The model can be more tightly constrained by adding near-IR data on noncentral zones for (Ar II), (AR III), (Ne II), and (S IV). The quadrant with the 'bar' creates an nonsymmetry that influences the observational data, and the model can therefore be improved with the additional data.
Mass spectra of products emerging from identical samples of a C-13-enriched polyimide polymer (chemically equivalent to Kapton) under atomic oxygen bombardment in space and in the laboratory were collected. Reaction products unambiguously detected in space were CO-13, NO, (12)CO2, and (13)CO2. These reaction products and two others, H2O and CO-12, were detected in the laboratory, along with inelastically scattered atomic and molecular oxygen. Qualitative agreement was seen in the mass spectra taken in space and in the laboratory; the agreement may be improved by reducing the fraction of O2 in the laboratory molecular beam. Both laboratory and space data indicated that CO and CO2 products come preferentially from reaction with the imide component of the polymer chain, raising the possibility that the either component may degrade in part by the 'evaporation' of higher molecular weight fragments. Laboratory time-of-flight distributions showed: (1) incomplete energy accommodation of impinging O and O2 species that do not react with the surface; and (2) both hyperthermal and thermal CO and CO2 products, suggesting two distinct reaction mechanisms with the surface.
We envision an artificial intelligence (AI) based system that will provide support and recommendations to the crew medical officer (CMO) and ground flight surgeon during long-duration space missions. Such a system would be pretrained on the knowledgebase of clinical knowledge on Earth, minimizing the amount of Earth data that needs to be transferred into space. Then during deployment, the system would be constantly refined through active learning from diverse streams of data from sensors in the spacecraft, data collected daily from individual astronauts, and human-in-the-loop feedback from the crew. The model could be interrogated for predictions and recommendations on personalized crew health based on the overall status of the spacecraft, medicinal stores, and status of other crew members. Adaptation techniques would be used to incorporate spaceflight data that have very different distributions from the training data due to the extreme environment. Edge computing and the most advanced neuromorphic processing would enable computation in scenarios with low power and bandwidth, while dimensionality reduction would be employed to ensure that the input data streams from spaceflight are as small as possible. In order to realize this long-term vision, several hardware and software aspects need to be developed and assembled. First, models pretrained on Earth biomedical data would need to be evaluated for predictive accuracy, and the best one selected. That model would need to be adapted to learn from diverse, sparse, and inconsistently measured data streams, as well as human-in-the-loop feedback. A data integration, standardization, and dimensionality reduction methodology would need to be developed to handle all data types and feed them into the model. Once the software and data infrastructure is developed, it would need to be integrated with small footprint compute processors and tested in high-radiation, high-vibration, unregulated temperature situations. As a short-term goal, we recommend to focus on the development of the data and model software structure. Several large language models (LLM) already exist that have been trained on Earth biomedical and clinical knowledgebases, including BioMedLLM, Med-PaLM, SPOKE LLM, and Foresight. These models need to be evaluated for accuracy and the best one chosen for a proof-of-concept structure, while maintaining awareness of the accelerating AI field and incorporating any newly improved model architectures as needed. Then, we recommend to develop a database of synthetic data types to mimic the diverse data streams that are expected in a long-duration space mission. This should include environmental and microbial data from the spacecraft, non-invasive data from wearables and point-of-care devices employed by astronauts, and more invasive molecular and physiological monitoring of clinical and biomarker data from astronauts. The data standardization methodology should be developed, and these data streams used to refine the clinical LLM. Several scenarios should be developed that could plausibly come up in a long-duration space mission, and changes or aberrations introduced to the data at specific times to mimic these scenarios. Then, question and answer tasks should be designed to interrogate the model for predictions and recommendations, with acceptable answers already identified.
This paper discusses far-IR and optical observations aimed at investigating the far-IR energy distribution of two peculiar galaxies without spiral arms which are actively forming stars: NGC 1569, a Magellanic irregular galaxy, and NGC 3593, a dusty S0/a galaxy. The data are used to determine the characteristic temperatures of the dust and to infer dust and molecular gas masses which are combined with other data to explore the characteristics of the interstellar media. Visual-wavelength continuum and H-alpha images are presented and used to estimate current and past star formation rates and the efficiency of stellar creation.
The primary objective of this proposal was to determine the relationship between the molecular gas and dust components of the interstellar medium of the Outer Galaxy. It made use of the High Resolution IRAS Galaxy Atlas and the FCRAO CO Survey of the Outer Galaxy. These HIRES images greatly augment the spatial dynamic range of the IRAS Survey data and the ability to discriminate multiple point sources within a compact region. Additionally, the HIRES far infrared images allow for more direct comparisons with molecular line data observed at 45 sec resolution. From funding of this proposal, we have completed two papers for publication in a refereed journal.
An analysis of data previously reported from a test series in the Electric Arc Shock Tube Facility for incident shocks composed of pure Nitrogen was performed. The present work focuses on the lowest velocity measured in the test (approximately 7 km/s) where molecular radiation is significant. Analysis of the spectral data with the NEQAIR radiative transport code obtains post-shock trends in temperature and number densities of the states of N2. The results suggest that chemical, and possibly thermal, equilibrium has not been obtained within the distance/time measured (about 5 cm/120 ms). In the nonequilibrium region of the shock, differences between rotational temperatures of different species are observed, as well as differences between rotational and vibrational temperatures. Population of rotational states above the dissociation limit is observed to occur over a distance of several cm. Finally, these data suggest that predissociation strongly affects the C^3 Π_u state of N2, leading to a lower measured radiation than predicted. An effective average pre-dissociation rate is shown to produce reasonable agreement under quasi-steady state approximation.
A modified local plasma model is established. The Gordon-Kim's molecular charged density model is employed to obtain a formula to evaluate the stopping power of many useful molecular systems. The stopping power of H2 and He gas was calculated for incident proton energy ranging from 100 keV to 2.5 MeV. The stopping power of O2, N2, and water vapor was also calculated for incident proton energy ranging from 40 keV. to 2.5 MeV. Good agreement with experimental data was obtained. A discussion of molecular effects leading to department from Bragg's rule is presented. The equipartition rule and the effect of nuclear momentum recoiling in stopping power are also discussed.
The dust characteristics of a 40 arcmin x 40 arcmin section of the Rho Ophiuchi molecular clouds complex revealed by the IRAS satellite are compared with both molecular line and deep star count data for the region. The data reveal the cloud to be clearly visible at 12 and 25 microns, as well as at 60 and 100 microns. Modeling the infrared emission from the cloud as being due to two populations of dust grains, the short-wavelength emission is found not to reflect the internal structure of the molecular cloud. The 60 micron opacity determined using a single grain emission model correlates reasonably well with (C-13)O column density and visual extinction up to roughly 5 mag. The cloud edges appear to be heated by the interstellar radiation field. The far-infrared luminosity to mass ratio for the region is determined to be 0.9 solar luminosity/solar mass, a value much smaller than the average ratio for the inner Galaxy.
Observations of the galactic longitude and latitude distributions of lambda = 2.6 mm CO emission are presented. Analysis of these spectral-line data yields the large-scale distribution of molecular clouds in the galactic disk and their z-distribution out of the disk. Strong maxima in the number of molecular clouds occur in the galactic nucleus and at galactic radii 4 to 8 kpc. The peak at 4 to 8 kpc correlates well with a region of enhanced 100-MeV gamma-ray emissivity. This correlation strongly supports the conclusion that the gamma-rays are produced as a result of cosmic ray interactions in molecular H2 clouds rather than in H(I). The width of the cloud layer perpendicular to the galactic plane between half-density points is 105 plus or minus 15 pc near the 5.5-kpc peak. The total mass of molecular gas in the interior of the galaxy exceeds that of atomic hydrogen and is 30 to the 9th power solar mass based on these observations.
Computer models of molecular electronic and vibrational emission intensities were developed. Known radiative emission rates (Einstein coefficients) permit the determination of relative excited state densities from spectral intensities. These codes were applied to the published spectra of glow above shuttle surface and to the Spacelab 1 results of Torr and Torr. The theoretical high-resolution spectra were convolved with the appropriate instrumental slit functions to allow accurate comparison with data. The published spacelab spectrum is complex but N2+ Meinel emission can be clearly identified in the ram spectrum. M2 First Positive emission does not correlate well with observed features, nor does the CN Red System. Spectral overlay comparisons are presented. The spectrum of glow above shuttle surfaces, in contrast to the ISO data, is not highly structured. Diatomic molecular emission was matched to the observed spectral shape. Source excitation mechanisms such as (oxygen atom)-(surface species) reaction product chemiluminescence, surface recombination, or resonance fluorescent re-emission will be discussed for each tentative assignment. These assignments are the necessary first analytical step toward mechanism identification. Different glow mechanisms will occur above surfaces under different orbital conditions.
High resolution spectra of the 11.3 micron emission band in M82 and NGC 7027 were obtained using the University of Texas IR echelle spectrometer on the IRTF in April 1988. The spectral resolution was 0.004 micron, with coverage from 11.0 to 11.6 microns. Spectra were measured at ten positions along a 10 min. long slit. Analysis of the data is still in progress, but initial results show no clear evidence of narrow structure within the feature. The analysis will involve comparison of the observed spectra to laboratory and predicted spectra of Polycylic Aromatic Hydrocarbons (PAHs) and Quenched Carbonaceous Composite (QCCs) to determine which may be responsible for the emission. The spectra will be examined with a goal of determining whether the emission is caused by molecular or solid state material. The data are also examined for evidence of variations in the shape and strength of the 11.3 micron feature with position on the sky. In NGC 7027 the 10 min. long slit went across the edge of the ionized nebulae, allowing comparison of emission from both ionized and neutral regions.
The purpose of this project is to develop and enhance the HITRAN molecular spectroscopic database and associated software to support the observational programs of the Earth Observing System (EOS). In particular, the focus is on the EOS projects: the Atmospheric Infrared Sounder (AIRS), the High-Resolution Dynamics Limb Sounder (HIRDLS), Measurements of Pollution in the Troposphere (MOPITT), the Tropospheric Emission Spectrometer (TES), and the Stratospheric Aerosol and Gas Experiment (SAGE III). The data requirements of these programs in terms of spectroscopy are varied, but usually call for additional spectral parameters or improvements to existing molecular bands. In addition, cross-section data for heavier molecular species must be expanded and made amenable to modeling in remote sensing. The effort in the project also includes developing software and distribution to make access, manipulation, and use of HITRAN functional to the EOS program.
During long duration missions onboard the International Space Station (ISS), alterations in T cell function and plasma cytokine profiles have been observed. Recent studies involving pattern recognition receptors (PRRs) have established that adaptation of innate immunity to long duration space flight occurs through changes in signal PRRs, Toll-like receptors (TLRs). Despite the fact that fundamental research of PRR molecular biology is far from complete, there are an increasing number of arguments confirming the important role of this system in regulating the initial stages of the adaptive immune response, as well as in the formation of autoimmune and allergic diseases. Long duration isolation is widely used by NASA as an analog for space flight with previous missions including several Antarctic bases, an undersea research station (NEEMO), and other isolation chambers. ‘SIRIUS’ is a multi-compartment pressurized facility at the IMBP in Moscow, Russia, in which subjects will spend 8 months executing tasks similar to those performed by astronauts in space. Prolonged isolation studies like SIRIUS replicate many of the influences expected to occur during long duration spaceflight missions including isolation, stress, confinement, and living in remote conditions. The immune study to be performed on the upcoming SIRIUS mission is being led by Dr. Sergey Ponomarev at the Institute of Biomedical Problems in Moscow, Russia. The NASA JSC Immunology lab will provide analysis of immune cell function, serum cytokines and stress hormones, and salivary cortisol, cytokines, and viruses. This study will be conducted with SIRIUS subjects under the auspices of the parent program. The goal of the study is to evaluate the effect of the 8-month isolation mission on components of human innate immunity at the molecular and cellular level. Successful implementation and completion of this project will provide a unique assortment of new data, significantly expanding the current understanding of the molecular and cellular changes in TLRs during long-term isolation. We hypothesize that mission-like isolation in the Russian NEK facility, consisting of circadian misalignment, isolation, stress, and ‘station lifestyle’, will result in a pattern of immune dysregulation similar to that observed in astronauts onboard ISS. This pattern of alterations can be summarized as phenotypic changes (altered distribution of peripheral cytotoxic, central memory, CD8+ T cell subsets), reductions in T cell function, alterations in plasma cytokine profiles (increased inflammatory and certain chemokines), and reductions in mitogen stimulated cytokine profiles (spans Th1, Th2, Th17). We further hypothesize that these immune changes will correlate with the reactivation of latent herpesviruses (which persists during orbital flight), to be used as measurable adverse clinical manifestation or with other observed symptomology. The SIRIUS-21 mission began in November of 2021 and successfully concluded with the crew emerging in July of 2022. Currently, the logistics of shipping the samples from Russia to the United States is being organized.
Attention is given to electron collision phenomena which can be studied under single-collision conditions at low and intermediate electron impact energies, ranging from threshold to a few hundred eV, using gas phase molecular targets. Several of the experimental methods discussed were first developed and applied to atoms, but are equally applicable to molecules with minor modifications in the interpretation of the data, due to the greater complexity of molecular systems.
The persistence of Polar Stratospheric Clouds (PSCs) observed by the Stratospheric Aerosol Measurement (SAM) 2 satellite sensor over a 9-year period is compared and contrasted. Histograms of the SAM 2 1.0 micron extinction ratio data (aerosol extinction normalized by the molecular extinction) at an altitude of 18 km in the Antarctic have been generated for three 10-day periods in the month of September. Statistics for eight different years (1979 to 1982 and 1984 to 1987) are shown in separate panels for each figure. Since the SAM 2 system is a solar occultation experiment, observations are limited to the edge of the polar night and no measurements are made deep within the vortex where temperatures could be colder. For this reason, use is made of the NMC global gridded fields and the known temperature-extinction relationship to infer additional information on the occurrence and areal coverage of PSCs. Calculations of the daily areal coverage of the 195 K isotherm will be presented for this same period of data. This contour level lies in the range of the predicted temperature for onset of the Type 1 particle enhancement mode at 50 mb (Poole and McCormick, 1988b) and should indicate approximately when formation of the binary HNO3-H2O particles begins.
Recent surveys of 2.6 mm CO emission and 100 MeV gamma-radiation in the galactic plane reveal a striking correlation suggesting that both emissions may be primarily proportional to the line-of-sight column density of H2 in the inner galaxy. Both the gamma ray and CO data suggest a prominent ring or arm consisting of cool clouds of H2 at a galactocentric distance of approximately 5 kpc with a mean density of approximately 4 atoms/cu cm. The importance of H2 in understanding galactic gamma ray observations is also reflected in the correlation of galactic latitude distribution of gamma rays and dense dust clouds. A detailed calculation of the gamma ray flux distribution in the 0 deg to 180 deg range using the CO data to obtain the average distribution of molecular clouds in the galaxy shows that most of the enhancement in the inner galaxy is due to pion-decay radiation and the 5 kpc ring plays a major role. Detailed agreement with the gamma ray data is obtained with the additional inclusion of contributions from bremsstrahlung and Compton radiation of secondary electrons and Compton radiation from the intense radiation field near the galactic center.
A two-dimensional, two-temperature, single fluid MHD code was used to predict the performance of cylindrical, self-field magnetoplasmadynamic (MPD) thrusters operated with argon, lithium, and hydrogen propellants. A thruster stability equation was determined relating maximum stable J(sup 2)/m values to cylindrical thruster geometry and propellant species. The maximum value of J(sup 2)/m was found to scale as the inverse of the propellant molecular weight to the 0.57 power, in rough agreement with limited experimental data which scales as the inverse square root of the propellant molecular weight. A general equation which relates total thrust to electromagnetic thrust, propellant molecular weight, and J(sup 2)/m was determined using reported thrust values for argon and hydrogen and calculated thrust values for lithium. In addition to argon, lithium, and hydrogen, the equation accurately predicted thrust for ammonia at sufficiently high J(sup 2)/m values. A simple algorithm is suggested to aid in the preliminary design of cylindrical, self-field MPD thrusters. A brief example is presented to illustrate the use of the algorithm in the design of a low power MPD thruster.