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DOE OSTI2021

Warming up cold inflation

The axion is a well-motivated candidate for the inflaton, as the radiative corrections that spoil many single-field models are avoided by virtue of its shift symmetry. However, axions generically couple to gauge sectors. As the axion slow-rolls during inflation, this coupling can cause the production of a non-diluting thermal bath, a situation known as “warm inflation”. This thermal bath can dramatically alter inflationary dynamics and observable predictions. In this paper, we demonstrate that a thermal bath can form for a wide variety of initial conditions. Furthermore, we find that axion inflation becomes warm over a large range of couplings, and explicitly map the parameter space for two axion inflation potentials. Finally, we show that in large regions of parameter space, axion inflation models once assumed to be safely “cold” are in fact warm, and must be reevaluated in this context.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2021

Lattice simulations of inflation

The scalar field theory of cosmological inflation constitutes nowadays one of the preferred scenarios for the physics of the early universe. In this paper we aim at studying the inflationary universe making use of a numerical lattice simulation. Various lattice codes have been written in the last decades and have been extensively used for understating the reheating phase of the universe, but they have never been used to study the inflationary phase itself far from the end of inflation (i.e. about 50 e-folds before the end of inflation). In this paper we use a lattice simulation to reproduce the well-known results of some simple models of single-field inflation, particularly for the scalar field perturbation. The main model that we consider is the standard slow-roll inflation with an harmonic potential for the inflaton field. We explore the technical aspects that need to be accounted for in order to reproduce with precision the nearly scale invariant power spectrum of inflaton perturbations. We also consider the case of a step potential, and show that the simulation is able to correctly reproduce the oscillatory features in the power spectrum of this model. Even if a lattice simulation is not needed in these cases, that are well within the regime of validity of linear perturbation theory, this sets the basis to future work on using lattice simulations to study more complicated models of inflation.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2023

Entanglement masquerading in the CMB

The simplest single-field inflation models capture all the relevant contributions to the patterns in the Cosmic Microwave Background (CMB) observed today. A key assumption in these models is that the quantum inflationary fluctuations that source such patterns are generated by a particular quantum state — the Bunch-Davies (BD) state. While this is a well-motivated choice from a theoretical perspective, the question arises of whether current data can rule out other, also well motivated, choices of states. In particular, as we previously demonstrated in [1], entanglement is naturally and inevitably dynamically generated during inflation given the presence of a "rolling" spectator scalar field — and the resulting entangled state will yield a primordial power spectrum with potentially measurable deviations compared to the canonical BD result. For this work we developed a perturbative framework to allow a systematic exploration of constraints on (or detection of) entangled states with Planck CMB data using Monte Carlo techniques. We have found that most entangled states accessible with our framework are consistent with the data. One would have to expand the framework to allow a greater variety of entangled states in order to saturate the Planck constraints and more systematically explore any preferences the data may have among the different possibilities.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2024

Cosmological collider signatures of Higgs-R 2 inflation

We study the cosmological collider signatures in the Higgs-R 2 inflation model. We consider two distinct types of signals: one originating from the inflaton coupling to Standard Model fermions and gauge bosons, and another arising from the isocurvature mode interaction with the inflaton. In the former case, we determine that the signal magnitude is likely too small for detection by upcoming probes, primarily due to suppression by both the Planck scale and slow-roll parameters. However, we provide a detailed computation of the signal which could be potentially applicable to various Higgs inflation variants. For the isocurvature mode signals, we observe that the associated couplings remain unsuppressed when the isocurvature mode is relatively light or comparable to the inflationary scale. In this case, we study the Higgs-R 2 inflation parameter space that corresponds to the quasi-single-field inflation regime and find that the signal strength could be as large as |f NL | > 1, making Higgs-R 2 inflation a viable candidate for observation by future 21-cm surveys.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2026

Particle production by time-varying dark energy and the end of cosmic expansion

We consider various possible consequences of time-varying dark energy due to a quintessence scalar field whose energy density is partially converted to particles as the field evolves down its potential. This particle production acts as a source of thermal friction on the field that can make it difficult to distinguish whether dark energy is due to a radiating field rolling down a steep potential, a purely self-interacting field moving down a flatter potential, or a cosmological constant. By reducing the acceleration of the scalar field, thermal friction increases the amount of accelerated expansion and can cause a sizable bump in the quintessence equation of state. We take special interest in the case where a steep potential rapidly changes from positive to negative as the field evolves, resulting in the end of cosmic expansion and the beginning of contraction. Even in this case, we find that thermal friction lengthens the period of accelerated expansion and consequently delays the end of cosmic expansion, making it challenging to detect the impending transition to contraction using conventional cosmological tests. However, particle production can also provide alternative avenues for detection by generating a background of thermal dark radiation, partly comprised of neutrinos or other particles, whose energy density exceeds the remnant photon energy density.

cosmological neutrinos↗

DOE OSTI2021

Parametric dependencies of locked mode thresholds in KSTAR L-mode plasmas

Resonant error fields with toroidal harmonics n = 1 and n = 2 in otherwise axisymmetric tokamak plasmas can drive disruptive locked modes when their strength exceeds a threshold value. This paper presents the sensitivity of error field threshold in global parameters such as line-averaged density and toroidal magnetic field as well as toroidal harmonics dependence in KSTAR L-mode plasmas. The error field threshold for mode-locking increases along with density up to a roll-over density, which coincides well with the linear ohmic confinement (LOC) to saturated ohmic confinement (SOC) density for the studied KSTAR plasmas. As a result, this non-monotonic density correlation of the error field threshold in LOC–SOC can be explained by a modification of existing theoretical scaling in SOC, while plasma rotation can also play an important role in setting the resonant error field threshold.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2021

Effects of upstream rotor tilt on a downstream floating wind turbine

This work quantifies the relationship between the design tilt of an upstream rotor and the structural response of a spar floating offshore wind turbine located in its wake. Three wind speed scenarios are considered: below, at, and above rated operation. The inflow is generated with the Mann model and the wake and loads are simulated with FAST.Farm. As the upstream rotor tilt goes from 0° to 6°, we find that the mean wake is displaced upward by more than 0.2 rotor diameters (D) by a downstream distance of 7 D. The vertical velocities increase by up to 35 cm/s in the center of the wake. As a result, the downstream rotor is partially waked and experiences a rotated velocity vector. With a higher upstream rotor tilt, the velocities and moments on the downstream turbine increase their mean axial value and their lateral and vertical standard deviation. These changes affect the blade and tower loading and the floater motion primarily in the out-of-plane direction: the damage-equivalent loads for the tower pitch moment and blade-root moment increase by up to 10% because of higher variability at the first mode for the tower and at one blade passing frequency for the blade root. Lesser effects are observed for the roll moments and for floater sway and heave. When the joint effect of rotor tilt and platform motion is considered, the load response on the downstream system is amplified primarily for tower pitch and blade out-of-plane moment.

17 WIND ENERGY↗

DOE OSTI2021

Gravito-turbulence and dynamo in poorly ionized protostellar discs – I. Zero-net-flux case

In their early stages, protoplanetary discs are sufficiently massive to undergo gravitational instability (GI). This instability is thought to be involved in mass accretion, planet formation via gas fragmentation, the generation of spiral density waves, and outbursts. A key and very recent area of research is the interaction between the GI and magnetic fields in young protoplanetary discs, in particular whether this instability is able to sustain a magnetic field via a dynamo. We conduct 3D, stratified shearing-box simulations using two independent codes, PLUTO and Athena++, to characterize the GI dynamo in poorly ionized protostellar discs subject to ambipolar diffusion. We find that the dynamo operates across a large range of ambipolar Elssaser number Am (which characterizes the strength of ambipolar diffusion) and is particularly strong in the regime Am = 10–100, with typical magnetic to thermal energy ratios of order unity. The dynamo is only weakly dependent on resolution (at least for Am ≲ 100), box size, and cooling law. The magnetic field is produced by the combination of differential rotation and large-scale vertical roll motions associated with spiral density waves. Our results have direct implications for the dynamo process in young protoplanetary discs and possibly some regions of active galactic nucleus discs.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2022

The primordial matter power spectrum on sub-galactic scales

The primordial matter power spectrum quantifies fluctuations in the distribution of dark matter immediately following inflation. Over cosmic time, overdense regions of the primordial density field grow and collapse into dark matter haloes, whose abundance and density profiles retain memory of the initial conditions. By analysing the image magnifications in 11 strongly lensed and quadruply imaged quasars, we infer the abundance and concentrations of low-mass haloes, and cast the measurement in terms of the amplitude of the primordial matter power spectrum. We anchor the power spectrum on large scales, isolating the effect of small-scale deviations from the Lambda cold dark matter (ΛCDM) prediction. Assuming an analytic model for the power spectrum and accounting for several sources of potential systematic uncertainty, including three different models for the halo mass function, we obtain correlated inferences of $\log _{10}\left(P / P_{\Lambda \rm {CDM}}\right)$, the power spectrum amplitude relative to the predictions of the concordance cosmological model, of $0.0_{-0.4}^{+0.5}$, $0.1_{-0.6}^{+0.7}$, and $0.2_{-0.9}^{+1.0}$ at k = 10, 25, and 50 $\rm {Mpc^{-1}}$ at $68 {{\ \rm per\ cent}}$ confidence, consistent with CDM and single-field slow-roll inflation.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2023

Cosmic variance and the inhomogeneous UV luminosity function of galaxies during reionization

When the first galaxies formed and starlight escaped into the intergalactic medium to reionize it, galaxy formation and reionization were both highly inhomogeneous in time and space, and fully coupled by mutual feedback. To show how this imprinted the UV luminosity function (UVLF) of reionization-era galaxies, we use our large-scale, radiation-hydrodynamics simulation CoDa II to derive the time- and space-varying halo mass function and UVLF, from z ≃ 6–15. That UVLF correlates strongly with local reionization redshift: earlier-reionizing regions have UVLFs that are higher, more extended to brighter magnitudes, and flatter at the faint end than later-reionizing regions observed at the same z. In general, as a region reionizes, the faint-end slope of its local UVLF flattens, and, by z = 6 (when reionization ended), the global UVLF, too, exhibits a flattened faint-end slope, ‘rolling-over’ at M UV ≳ -17. CoDa II’s UVLF is broadly consistent with cluster-lensed galaxy observations of the Hubble Frontier Fields at z = 6–8, including the faint end, except for the faintest data point at z = 6, based on one galaxy at M UV = -12.5. According to CoDa II, the probability of observing the latter is $\sim 5~{{\ \rm per\ cent}}$. However, the effective volume searched at this magnitude is very small, and is thus subject to significant cosmic variance. Here, we find that previous methods adopted to calculate the uncertainty due to cosmic variance underestimated it on such small scales by a factor of 2–4, primarily by underestimating the variance in halo abundance when the sample volume is small.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2024

Impact of survey spatial variability on galaxy redshift distributions and the cosmological 3 × 2-point statistics for the Rubin Legacy Survey of Space and Time (LSST)

We investigate the impact of spatial survey non-uniformity on the galaxy redshift distributions for forthcoming data releases of the Rubin Observatory Legacy Survey of Space and Time (LSST). Specifically, we construct a mock photometry data set degraded by the Rubin OpSim observing conditions, and estimate photometric redshifts of the sample using a template-fitting photo-z estimator, BPZ, and a machine learning method, FlexZBoost. We select the Gold sample, defined as $i\lt 25.3$ for 10 yr LSST data, with an adjusted magnitude cut for each year and divide it into five tomographic redshift bins for the weak lensing lens and source samples. We quantify the change in the number of objects, mean redshift, and width of each tomographic bin as a function of the coadd i-band depth for 1-yr (Y1), 3-yr (Y3), and 5-yr (Y5) data. In particular, Y3 and Y5 have large non-uniformity due to the rolling cadence of LSST, hence provide a worst-case scenario of the impact from non-uniformity. We find that these quantities typically increase with depth, and the variation can be $10\!-\!40~{{\rm per\ cent}}$ at extreme depth values. Using Y3 as an example, we propagate the variable depth effect to the weak lensing $3\times 2$ pt analysis, and assess the impact on cosmological parameters via a Fisher forecast. We find that galaxy clustering is most susceptible to variable depth, and non-uniformity needs to be mitigated below 3 per cent to recover unbiased cosmological constraints. There is little impact on galaxy–shear and shear–shear power spectra, given the expected LSST Y3 noise.

cosmology↗

DOE OSTI2021

Molecular underpinnings of ssDNA specificity by Rep HUH-endonucleases and implications for HUH-tag multiplexing and engineering

Abstract Replication initiator proteins (Reps) from the HUH-endonuclease superfamily process specific single-stranded DNA (ssDNA) sequences to initiate rolling circle/hairpin replication in viruses, such as crop ravaging geminiviruses and human disease causing parvoviruses. In biotechnology contexts, Reps are the basis for HUH-tag bioconjugation and a critical adeno-associated virus genome integration tool. We solved the first co-crystal structures of Reps complexed to ssDNA, revealing a key motif for conferring sequence specificity and for anchoring a bent DNA architecture. In combination, we developed a deep sequencing cleavage assay, termed HUH-seq, to interrogate subtleties in Rep specificity and demonstrate how differences can be exploited for multiplexed HUH-tagging. Together, our insights allowed engineering of only four amino acids in a Rep chimera to predictably alter sequence specificity. These results have important implications for modulating viral infections, developing Rep-based genomic integration tools, and enabling massively parallel HUH-tag barcoding and bioconjugation applications.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration

Specialized or secondary metabolites are small molecules of biological origin, often showing potent biological activities with applications in agriculture, engineering and medicine. Usually, the biosynthesis of these natural products is governed by sets of co-regulated and physically clustered genes known as biosynthetic gene clusters (BGCs). To share information about BGCs in a standardized and machine-readable way, the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard and repository was initiated in 2015. Since its conception, MIBiG has been regularly updated to expand data coverage and remain up to date with innovations in natural product research. Here, we describe MIBiG version 4.0, an extensive update to the data repository and the underlying data standard. In a massive community annotation effort, 267 contributors performed 8304 edits, creating 557 new entries and modifying 590 existing entries, resulting in a new total of 3059 curated entries in MIBiG. Particular attention was paid to ensuring high data quality, with automated data validation using a newly developed custom submission portal prototype, paired with a novel peer-reviewing model. MIBiG 4.0 also takes steps towards a rolling release model and a broader involvement of the scientific community. MIBiG 4.0 is accessible online at https://mibig.secondarymetabolites.org/.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2025

Cryo-EM structure of AAV2 Rep68 bound to integration site AAVS1: insights into the mechanism of DNA melting

Abstract The Rep68 protein from Adeno-Associated Virus (AAV) is a multifunctional SF3 helicase that performs most of the DNA transactions necessary for the viral life cycle. During AAV DNA replication, Rep68 assembles at the origin of replication, catalyzing the DNA melting and nicking reactions during the hairpin rolling replication process to complete the second-strand synthesis of the AAV genome. We report the cryo-electron microscopy structures of Rep68 bound to the adeno-associated virus integration site 1 in different nucleotide-bound states. In the nucleotide-free state, Rep68 forms a heptameric complex around DNA, with three origin-binding domains (OBDs) bound to the Rep-binding element sequence, while three remaining OBDs form transient dimers with them. The AAA+ domains form an open ring without interactions between subunits and DNA. We hypothesize that the heptameric structure is crucial for loading Rep68 onto double-stranded DNA. The ATPγS complex shows that only three subunits associate with the nucleotide, leading to a conformational change that promotes the formation of both intersubunit and DNA interactions. Moreover, three phenylalanine residues in the AAA+ domain induce a steric distortion in the DNA. Our study provides insights into how an SF3 helicase assembles on DNA and provides insights into the DNA melting process.

Jaiswal, Rahul↗

DOE OSTI2026

Primordial black hole dark matter: A quantitative parameter sensitivity comparison across formation mechanisms and particle candidates

Primordial black holes (PBHs) in the asteroid-mass window ( 10 17 – 10 22 g ) can account for all of the dark matter without violating any observational constraint, yet are routinely dismissed as fine-tuned. I put that dismissal to the test by applying three complementary sensitivity measures uniformly across a broad landscape: three noninflationary PBH production mechanisms, six classes of inflationary PBH models, and seven particle dark matter benchmarks, all evaluated against the same observable target. Three distinct naturalness universality classes emerge, determined entirely by the analytic structure of the abundance map rather than by the nature of the dark matter candidate. Biased-domain-wall PBHs, in their least model-dependent (free- V b ) form, have the same low sensitivity, Δ = 4.5 , as off-resonance weakly interacting massive particles and freeze-in particles ( Δ = 2 ), a sensitivity that, because it is constant over the entire parameter space of the construction, also coincides trivially with its own Wilson-normalized average within that parameter space (Section Definition and conventions), an equivalence that concerns only the space over which Δ is computed and is not a naturalness statement about the construction as a whole; a further reduction to Δ = 2 is possible only under the additional, independently motivated but not required, assumption that the domain-wall bias is generated by Planck-suppressed operators; early matter-domination PBHs occupy an intermediate tier alongside coannihilating weakly interacting massive particles (WIMPs), unified by a structural identity in which the sensitivity measure equals the logarithm of the ratio of the formation scale to the matter–radiation equality scale; first-order phase transition PBHs, once the more accurate super-exponential collapse probability is used in place of the single-exponential approximation, instead belong to the same highly sensitive tier as resonant WIMP annihilation and single-field inflationary collapse, for a structurally distinct reason; single-field ultraslow-roll inflationary collapse is severely tuned for a distinct reason: a double exponential in which the power spectrum amplitude is itself exponentially sensitive to the inflaton potential coefficients, on top of the exponential collapse sensitivity of the abundance map. My main conclusion is that the claim that PBH dark matter is generically fine-tuned conflates the worst case with a landscape spanning every naturalness tier. The Barbieri-Giudice sensitivity computed here and the Wilson-normalized measure of Iovino and Riotto answer distinct and mutually consistent questions about the same construction, a distinction I clarify within the two-layer decomposition.

Profumo, Stefano [University of California, Santa ↗

DOE OSTI2021

Cosmological evolution of ultralight axionlike scalar fields

In this paper, we examine the cosmological evolution of ultralight axionlike (ULA) scalar fields with potentials of the form V(Φ)=m 2 f 2 [1–cos(Φ/f)] n , with particular emphasis on the deviation in their behavior from the corresponding small–Φ power-law approximations to these potentials: V(Φ)∝Φ 2n . We show that in the slow-roll regime, when Φ ˙2 /2 $\ll$ V(Φ), the full ULA potentials yield a more interesting range of possibilities for quintessence than do the corresponding power law approximations. For rapidly oscillating scalar fields, we derive the equation of state parameter and oscillation frequency for the ULA potentials and show how they deviate from the corresponding power-law values. We derive an analytic expression for the equation of state parameter that better approximates the ULA value than does the pure power-law approximation.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2022

Spectral distortion anisotropy from inflation for primordial black holes

Single-field inflationary models that seek to greatly enhance small-scale power in order to form primordial black holes predict both a squeezed bispectrum that is enhanced by this small-scale power and a potentially detectable enhancement of cosmic microwave background (CMB) spectral distortions. Despite this combination, spectral distortion anisotropy on CMB scales remains small since the squeezed bispectrum represents an unobservable modulation of the scale rather than local amplitude for the short-wavelength acoustic power that dissipates and forms the μ spectral distortion. Furthermore, the leading-order amplitude effect comes from the local modulation of acoustic dissipation at the beginning of the μ epoch at the end of thermalization by a long-wavelength mode that is correlated with CMB anisotropy itself. Compensating factors from the suppression by the square of the ratio the comoving horizon at thermalization to the smallest detectable primary CMB scales (~0.0005) and maximal allowed enhancement of μ (~5000) leaves a signal in the μT cross spectrum that is still well beyond the capabilities of PIXIE or LiteBIRD space missions due to sensitivity and resolution while remaining much larger than in single-field slow-roll inflation and potentially observable.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2023

Planck constraints and gravitational wave forecasts for primordial black hole dark matter seeded by multifield inflation

Here, we perform a Markov Chain Monte Carlo analysis of a simple yet generic multifield inflation model characterized by two scalar fields coupled to each other and nonminimally coupled to gravity, fit to Planck 2018 cosmic microwave background (CMB) data. In particular, model parameters are constrained by data on the amplitude of the primordial power spectrum of scalar curvature perturbations on CMB scales A s , the spectral index n s , and the ratio of power in tensor to scalar modes r, with a prior that the primordial power spectrum should also lead to primordial black hole (PBH) production sufficient to account for the observed dark matter abundance. We find that n s in particular controls the constraints on our model. Whereas previous studies of PBH formation from an ultraslow-roll phase of inflation have highlighted the need for at least one model parameter to be highly fine-tuned, we identify a degeneracy direction in parameter space such that shifts by ~10% of one parameter can be compensated by comparable shifts in other parameters while preserving a close fit between model predictions and observations. Furthermore, we find this allowed parameter region produces observable gravitational wave signals in the frequency ranges to which upcoming experiments are projected to be sensitive, including Advanced LIGO and Virgo, the Einstein Telescope, Cosmic Explorer, DECIGO, and LISA.

79 ASTRONOMY AND ASTROPHYSICS↗