Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “Persistent Identifiers”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 577 records · Page 32
All sourcesNASA NTRSDOE OSTI
DOE OSTI2016

SETI OBSERVATIONS OF EXOPLANETS WITH THE ALLEN TELESCOPE ARRAY

We report radio SETI observations on a large number of known exoplanets and other nearby star systems using the Allen Telescope Array (ATA). Observations were made over about 19000 hr from 2009 May to 2015 December. This search focused on narrowband radio signals from a set totaling 9293 stars, including 2015 exoplanet stars and Kepler objects of interest and an additional 65 whose planets may be close to their habitable zones. The ATA observations were made using multiple synthesized beams and an anticoincidence filter to help identify terrestrial radio interference. Stars were observed over frequencies from 1 to 9 GHz in multiple bands that avoid strong terrestrial communication frequencies. Data were processed in near-real time for narrowband (0.7–100 Hz) continuous and pulsed signals with transmitter/receiver relative accelerations from −0.3 to 0.3 m s{sup −2}. A total of 1.9 × 10{sup 8} unique signals requiring immediate follow-up were detected in observations covering more than 8 × 10{sup 6} star-MHz. We detected no persistent signals from extraterrestrial technology exceeding our frequency-dependent sensitivity threshold of 180–310 × 10{sup −26} W m{sup −2}.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2018

Fate of leaf litter deposits and impacts on oxygen availability in bank filtration column studies

Highlights: • Impacts of leaf inputs in bank filtration and soil aquifer treatment. • Long-term column experiments with leaf litter fragments. • Severe oxygen consumption by bio-degradation within a few millimeters. • No co-metabolic degradation of benzotriazole and carbamazepine. • Decline of carbon content relative to nitrogen and sulfur. Degradation of particulate organic carbon (POC) such as leaf litter might deplete dissolved oxygen within the upper layers of bank filtration, an efficient and robust barrier for pathogens and for various organic micro-pollutants (OMP) in water supply systems worldwide. The degradation of OMP during bank filtration depends on the redox conditions. The present study aimed at identifying the impacts and fates of different local leaves on the oxygen consumption and the possible biological degradation of indicator OMP. Oxygen concentrations initially decreased within the columns from around 8 mg/L in the influent to low concentrations indicating extensive consumption within a short travel distance. Still a substantial oxygen consumption was observed after 250 days. OMP concentrations were not significantly affected by the microbial processes. A layer of calcium carbonate crystallites was observed on the POC layer. Some leaf fragments appeared to be persistant towards degradation and the carbon content relative to nitrogen and sulfur contents decreased within 250 days. The results demonstrate that trees at bank filtration sites might have a strong long-term impact on the subsurface redox conditions.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Persistence and plasticity in bacterial gene regulation

Organisms orchestrate cellular functions through transcription factor (TF) interactions with their target genes, although these regulatory relationships are largely unknown in most species. Here we report a high-throughput approach for characterizing TF-target gene interactions across species and its application to 354 TFs across 48 bacteria, generating 17,000 genome-wide binding maps. This dataset revealed themes of ancient conservation and rapid evolution of regulatory modules. We observed rewiring, where the TF sensing and regulatory role is maintained while the arrangement and identity of target genes diverges, in some cases encoding entirely new functions. We further integrated phenotypic information to define new functional regulatory modules and pathways. So, we identified 242 new TF DNA binding motifs, including a 70% increase of known Escherichia coli motifs and the first annotation in Pseudomonas simiae, revealing deep conservation in bacterial promoter architecture. Our method provides a versatile tool for functional characterization of genetic pathways in prokaryotes and eukaryotes.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Low-temperature mineralization of perfluorocarboxylic acids

Per- and polyfluoroalkyl substances (PFAS) are persistent, bioaccumulative pollutants found in water resources at concentrations harmful to human health. Whereas current PFAS destruction strategies use nonselective destruction mechanisms, we found that perfluoroalkyl carboxylic acids (PFCAs) could be mineralized through a sodium hydroxide–mediated defluorination pathway. PFCA decarboxylation in polar aprotic solvents produced reactive perfluoroalkyl ion intermediates that degraded to fluoride ions (78 to ~100%) within 24 hours. The carbon-containing intermediates and products were inconsistent with oft-proposed one-carbon-chain shortening mechanisms, and we instead computationally identified pathways consistent with many experiments. Degradation was also observed for branched perfluoroalkyl ether carboxylic acids and might be extended to degrade other PFAS classes as methods to activate their polar headgroups are identified.

Science & Technology - Other Topics↗
DOE OSTI2015

Albedo and Diffuse POA Measurements to Evaluate Transposition Model Uncertainty

Albedo and diffuse plane of array (DPOA) measurements are used in addition to standard global horizontal irradiance (GHI), direct normal irradiance (DNI), diffuse horizontal irradiance (DNI), and plane of array irradiance (POA) measurements to determine the impact of albedo on transposition model performance. Albedo measurements averaged 0.214. Daily albedo values ranged from 0.148 to 0.236 and were found to be correlated to daily relative humidity. DPOA measurements were compared to calculated DPOA values (from POA and DNI), and helped identify a suspected deviation from due south in the azimuth of the POA measurement. Since the measured albedo average was close to the typical fixed $^{albedo = 0.2}$ assumption, little difference was seen between using measured and fixed albedo (~0.15% differences in mean bias difference (MBD) and root mean squared difference (RMSD)). However, evaluation of transposition models at other fixed albedos showed an albedo change of 0.1 is found to increase total modeled insolation by approximately 1%. Thus, for locations with different ground surfaces (e.g., persistent snow cover of black surfaces), the impact of using measured albedo instead of the fixed $^{albedo = 0.2}$ assumption may be greater. Measurement deviations resulted in up to 2% changes in MBD and RIVISD when switching between interrelated measurements (e.g., GHI and DHI as inputs to transposition models versus DNI and DHI as inputs). Variation among transposition models was also up to 2% MBD and RMSD. Thus, for this data set, measurement deviation and transposition model selection are found to have more impact than using measured albedo instead fixed albedo.

42 ENGINEERING↗
DOE OSTI2020

In-Situ Uranium Source Treatment Performance Assessment Elements - 20247

Field-scale in situ injection of an aqueous polyphosphate amendment was conducted to decrease uranium leaching from a vadose zone source to groundwater near the Columbia River at the U.S. Department of Energy's Hanford Site. After an initial phase of application in November 2015, this treatment was applied as an enhanced attenuation approach in September 2018, targeting uranium in a subsurface zone where water table periodically rises in response to the seasonal high river stage. Uranium within this zone is aqueous, adsorbed, and in low- and high-solubility precipitates and is mobilized into the groundwater at high river stage, resulting in a persistent groundwater plume. The polyphosphate amendment creates phosphate coatings on uranium (potentially including low solubility uranium-phosphate precipitates) that decrease the uranium leached into groundwater when the zone is periodically rewetted to improve the ability of natural attenuation to meet groundwater concentration objectives. For treatment, the amendment was injected into a network of wells within the periodically rewetted source area. Multiple lines of evidence are being applied to evaluate the performance of the phosphate treatment. Three elements of this performance assessment include 1) identifying the distribution of injected phosphate amendment to the targeted treatment zone using cross-borehole electrical resistivity tomography and comparisons of phosphate precipitates between pre- and post-treatment samples, 2) demonstrating the functional reduction in uranium mobility and leachability using laboratory tests with pre- and post- treatment sediments from the source zone, and 3) evaluating the presence of low-solubility uranium phosphate minerals and/or coatings associated with reduced uranium mobility. (authors)

07 ISOTOPE AND RADIATION SOURCES↗
DOE OSTI2014

Self-interacting asymmetric dark matter coupled to a light massive dark photon

Dark matter (DM) with sizeable self-interactions mediated by a light species offers a compelling explanation of the observed galactic substructure; furthermore, the direct coupling between DM and a light particle contributes to the DM annihilation in the early universe. If the DM abundance is due to a dark particle-antiparticle asymmetry, the DM annihilation cross-section can be arbitrarily large, and the coupling of DM to the light species can be significant. We consider the case of asymmetric DM interacting via a light (but not necessarily massless) Abelian gauge vector boson, a dark photon. In the massless dark photon limit, gauge invariance mandates that DM be multicomponent, consisting of positive and negative dark ions of different species which partially bind in neutral dark atoms. We argue that a similar conclusion holds for light dark photons; in particular, we establish that the multi-component and atomic character of DM persists in much of the parameter space where the dark photon is sufficiently light to mediate sizeable DM self-interactions. We discuss the cosmological sequence of events in this scenario, including the dark asymmetry generation, the freeze-out of annihilations, the dark recombination and the phase transition which gives mass to the dark photon. We estimate the effect of self-interactions in DM haloes, taking into account this cosmological history. We place constraints based on the observed ellipticity of large haloes, and identify the regimes where DM self-scattering can affect the dynamics of smaller haloes, bringing theory in better agreement with observations. Moreover, we estimate the cosmological abundance of dark photons in various regimes, and derive pertinent bounds.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

Decay spectroscopy of two-quasiparticle K isomers in Cm 246 , 248 via inelastic and transfer reactions

The decay of K isomers in Cm (Z = 96) isotopes has been investigated using inelastic and transfer reactions. The half-life of a previously identified 2-quasiparticle (qp) K π = 8⁻ isomer in 246 Cm has been measured. A new 2-qp isomer is observed in 248 Cm, its half-life measured and its decay scheme established. The reduced K hindrances extracted for the decay transitions from the isomers in 246,248 Cm suggest K to be a robust quantum number and validate axial symmetry in these nuclei. The excitation energies of the 2-qp isomers in 246 Cm (N = 150) and 248 Cm (N = 152) confirm the persistence of a deformed subshell gap at N = 152 in the Z ≈ 100 region down to Z = 96 nuclei.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2017

Salmonella enterica Serovar Typhi Lipopolysaccharide O-Antigen Modification Impact on Serum Resistance and Antibody Recognition

Salmonella enterica serovar Typhi is a human-restricted Gram-negative bacterial pathogen responsible for causing an estimated 27 million cases of typhoid fever annually, leading to 217,000 deaths, and current vaccines do not offer full protection. The O-antigen side chain of the lipopolysaccharide is an immunodominant antigen, can define host-pathogen interactions, and is under consideration as a vaccine target for some Gram-negative species. The composition of the O-antigen can be modified by the activity of glycosyltransferase (gtr) operons acquired by horizontal gene transfer. Here we investigate the role of two gtr operons that we identified in the S. Typhi genome. Strains were engineered to express specific gtr operons. Full chemical analysis of the O-antigens of these strains identified gtr-dependent glucosylation and acetylation. The glucosylated form of the O-antigen mediated enhanced survival in human serum and decreased complement binding. A single nucleotide deviation from an epigenetic phase variation signature sequence rendered the expression of this glucosylating gtr operon uniform in the population. In contrast, the expression of the acetylating gtrC gene is controlled by epigenetic phase variation. Acetylation did not affect serum survival, but phase variation can be an immune evasion mechanism, and thus, this modification may contribute to persistence in a host. In murine immunization studies, both O-antigen modifications were generally immunodominant. Our results emphasize that natural O-antigen modifications should be taken into consideration when assessing responses to vaccines, especially O-antigen-based vaccines, and that the Salmonella gtr repertoire may confound the protective efficacy of broad-ranging Salmonella lipopolysaccharide conjugate vaccines.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Graph Identification of Proteins in Tomograms (GRIP-Tomo) 2.0: Topologically aware classification for proteins

Cryo-electron tomography (cryo-ET) enables structural characterization of biomolecules under near-native conditions. Existing approaches for interpreting the resulting three-dimensional volumes are computationally expensive and have difficulty interpreting density associated with small proteins/complexes. To explore alternate approaches for identifying proteins in cryo-ET data we pursued a Graph Network and topologically invariant approach. Here, we report on a fast algorithm that classifies particles by searching for nuances of evolutionarily conversed motifs and the geometrical characteristics of protein structure. GRIP-Tomo 2.0 is a machine-learning pipeline that extracts interpretable topological features of protein structures within noisy experimental backgrounds. Compared to version 1.0, the new pipeline includes three upgrades that significantly improve performance including synthetic tomogram generation simulating realistic noise, graph-based persistent feature extraction as protein fingerprints, and high-performance computing acceleration. GRIP-Tomo 2.0 achieves over 90% accuracy in classifying between proteins and noise using both real and synthetic datasets which represents a foundational step toward advancing cryo-ET workflows and empowering automated visual proteomics.

Li, Chengxuan↗
DOE OSTI2022

Spectroscopic signatures and oxidation characteristics of nanosecond laser-induced cerium plasmas

Improving technologies related to the wide area environmental sampling of nuclear materials supports the nuclear nonproliferation mission of preventing the proliferation of nuclear weapons by monitoring nuclear weapons tests and detecting undeclared nuclear fuel cycle activities. Standoff, laser-based detection techniques such as laser-induced breakdown spectroscopy have the potential to offer robust, field-deployable methods that provide rapid element-specific and phase identifiable measurements over a wide range of materials. This work aims to elucidate the effects of atmospheric conditions and oxidation reactions on the highly complex and transient spectroscopic signatures of laser-induced plutonium surrogate plasmas. Time-resolved spectra of nanosecond laser ablation cerium plasmas were measured using laser-induced breakdown spectroscopy in a range of atmospheres containing low to high concentrations of oxygen. Here, the growth of strong CeO molecular emission bands was observed in the visible spectrum, where it was shown that the persistence of CeO is reduced from around 60 μs to 50 μs in oxygen rich atmospheric environments. To further investigate the growth and depletion of CeO in the laser-produced plasma, ratios of CeO-to-Ce emission were generated using integrated intensities corresponding to the Q-branch of the CeO D 1 -X 1 transitions and numerous strong atomic Ce peaks. It was determined that the fastest rate of formation of CeO in argon occurred for moderate oxygen mass fractions between 0.10 and 0.15 while the ratios were reduced at higher oxygen mass fractions (i.e., Y O 2 = 0.20) due to competing oxidation reactions and lower plasma temperatures.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2014

Human borna disease virus infection impacts host proteome and histone lysine acetylation in human oligodendroglia cells

Background: Borna disease virus (BDV) replicates in the nucleus and establishes persistent infections in mammalian hosts. A human BDV strain was used to address the first time, how BDV infection impacts the proteome and histone lysine acetylation (Kac) of human oligodendroglial (OL) cells, thus allowing a better understanding of infection-driven pathophysiology in vitro. Methods: Proteome and histone lysine acetylation were profiled through stable isotope labeling for cell culture (SILAC)-based quantitative proteomics. The quantifiable proteome was annotated using bioinformatics. Histone acetylation changes were validated by biochemistry assays. Results: Post BDV infection, 4383 quantifiable differential proteins were identified and functionally annotated to metabolism pathways, immune response, DNA replication, DNA repair, and transcriptional regulation. Sixteen of the thirty identified Kac sites in core histones presented altered acetylation levels post infection. Conclusions: BDV infection using a human strain impacted the whole proteome and histone lysine acetylation in OL cells. - Highlights: • A human strain of BDV (BDV Hu-H1) was used to infect human oligodendroglial cells (OL cells). • This study is the first to reveal the host proteomic and histone Kac profiles in BDV-infected OL cells. • BDV infection affected the expression of many transcription factors and several HATs and HDACs.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2019

The distinction of CPR bacteria from other bacteria based on protein family content

Abstract Candidate phyla radiation (CPR) bacteria separate phylogenetically from other bacteria, but the organismal distribution of their protein families remains unclear. Here, we leveraged sequences from thousands of uncultivated organisms and identified protein families that co-occur in genomes, thus are likely foundational for lineage capacities. Protein family presence/absence patterns cluster CPR bacteria together, and away from all other bacteria and archaea, partly due to proteins without recognizable homology to proteins in other bacteria. Some are likely involved in cell-cell interactions and potentially important for episymbiotic lifestyles. The diversity of protein family combinations in CPR may exceed that of all other bacteria. Over the bacterial tree, protein family presence/absence patterns broadly recapitulate phylogenetic structure, suggesting persistence of core sets of proteins since lineage divergence. The CPR could have arisen in an episode of dramatic but heterogeneous genome reduction or from a protogenote community and co-evolved with other bacteria.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2014

Anisotropic charge dynamics in the quantum spin-liquid candidate κ - ( BEDT-TTF ) 2 Cu 2 ( CN ) 3

We have in detail characterized the anisotropic charge response of the dimer Mott insulator kappa-(BEDT-TTF)(2)Cu-2(CN)(3) by dc conductivity, Hall effect, and dielectric spectroscopy. At room temperature, the Hall coefficient is positive and close to the value expected from stoichiometry; the temperature behavior follows the dc resistivity rho(T). Within the planes the dc conductivity is well described by variable-range hopping in two dimensions; this model, however, fails for the out-of-plane direction. An unusually broad in-plane dielectric relaxation is detected below about 60 K; it slows down much faster than the dc conductivity following an Arrhenius law. At around 17 K, we can identify a pronounced dielectric anomaly concomitantly with anomalous features in the mean relaxation time and spectral broadening. The out-of-plane relaxation, on the other hand, shows a much weaker dielectric anomaly; it closely follows the temperature behavior of the respective dc resistivity. At lower temperatures, the dielectric constant becomes smaller both within and perpendicular to the planes; also, the relaxation levels off. The observed behavior bears features of relaxorlike ferroelectricity. Because heterogeneities impede its long-range development, only a weak-tunneling-like dynamics persists at low temperatures. We suggest that the random potential and domain structure gradually emerge due to the coupling to the anion network.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2021

Biogeochemistry of the Antrim Shale Natural Gas Reservoir

The Antrim Shale, located in the Michigan Basin, United States (U.S.), is a major U.S. shale play having produced over 2.5 Trillion Cubic Feet (Tcf) of unconventional shale natural gas as of 2010. The shallow nature of this formation sets it apart from other, more characterized unconventional shale gas plays. The depth of gas production of the Antrim ranges from approximately 150 to 600 m and it is typically vertically drilled, contrary to deeper, horizontally drilled shales. A thorough understanding of the biogeochemistry and microbiology of this complex system will be advantageous for improving well performance, produced water management, and potential biocidal treatment as microbial community composition can vary substantially even among closely spaced wells. In this study, we analyzed produced water collected from nine different wells in the Antrim Shale by investigating the geochemical and microbial community composition of the produced water to gain greater insight into the overall biogeochemistry of this unique shale system. The majority of the wells from this study had high total dissolved solids (TDS) primarily composed of chloride and sodium, averaging 86,804 mg/L with a maximum 116,223 mg/L; however, three of the wells sampled along the northern margin of the basin exhibited significantly lower TDS ranging from 4932 to 6496 mg/L. Overall, our microbial community analysis revealed relatively low abundance within our samples and high variability of the microbial community among the sampled wells. The majority of bacterial sequences were identified within Proteobacteria, Firmicutes, and Actinobacteria phyla and metagenomic sequencing revealed the low presence of Methanobacteriaceae within each sample. We also investigated potential microbial community drivers and found that TDS, sodium, chloride, iodide, bromide, ammonium, potassium, and strontium were significantly correlated with the observed microbial community. The varying geochemical conditions between wells demonstrate different subsurface environmental niches, potentially driving the heterogeneous microbial communities we observed from well to well. This analysis suggests an important relationship between both well location and geochemistry and the observed microbial community that can persist in the reservoir. Continued studies of the Antrim Shale will improve our understanding of the complex interdependencies of this ecosystem.

03 NATURAL GAS↗
DOE OSTI2022

The Melampsora americana Population on Salix purpurea in the Great Lakes Region Is Highly Diverse with a Contributory Influence of Clonality

Shrub willows (Salix spp.) are emerging as a viable lignocellulosic, second-generation bioenergy crop with many growth characteristics favorable for marginal lands in New York State and surrounding areas. Willow rust, caused by members of the genus Melampsora, is the most limiting disease of shrub willow in this region and remains extremely understudied. In this study, genetic diversity, genetic structure, and pathogen clonality were examined in Melampsora americana over two growing seasons via genotyping-by-sequencing to identify single-nucleotide polymorphism markers. In conjunction with this project, a reference genome of rust isolate R15-033-03 was generated to aid in variant discovery. Sampling between years allowed regional and site-specific investigation into population dynamics, in the context of both wild and cultivated hosts within high-density plantings. This work revealed that this pathogen is largely panmictic over the sampled areas, with few sites showing moderate genetic differentiation. These data support the hypothesis of sexual recombination between growing seasons because no genotype persisted across the two years of sampling. Additionally, clonality was determined as a driver of pathogen populations within cultivated fields and single shrubs; however, there is also evidence of high genetic diversity of rust isolates in all settings. This work provides a framework for M. americana population structure in the Great Lakes region, providing crucial information that can aid in future resistance breeding efforts.

Plant Sciences↗
DOE OSTI2019

Overview: Additive Manufacturing Enabled Accelerated Design of Ni-based Alloys for Improved Fatigue Life

An in-depth overview on an emerging area of the additive-manufacturing-enabled, accelerated design of Ni-based alloys for improved high-cycle and very-high-cycle fatigue life is presented. Existing literature on the subject is critically reviewed, and key knowledge gaps are identified. Here, an efficient life-cycle approach, integrating the model-make-measure-verify strategy in the design of these alloys is introduced and discussed.

36 MATERIALS SCIENCE↗
DOE OSTI2020

IR dynamics from UV divergences: UV/IR mixing, NCFT, and the hierarchy problem

The persistence of the hierarchy problem points to a violation of effective field theory expectations. A compelling possibility is that this results from a physical breakdown of EFT, which may arise from correlations between ultraviolet (UV) and infrared (IR) physics. To this end, we study noncommutative field theory (NCFT) as a toy model of UV/IR mixing which generates an emergent infrared scale from ultraviolet dynamics. We explore the range of such theories where ultraviolet divergences are transmogrified into infrared scales, focusing particularly on the properties of Yukawa theory, where we identify a new infrared pole accessible in the s-channel of the Lorentzian theory. We further investigate the interplay between UV-finiteness and UV/IR mixing by studying properties of the softly-broken noncommutative Wess-Zumino model as soft terms are varied relative to the cutoff. While the Lorentz violation inherent to noncommutative theories may limit their direct application to the hierarchy problem, these toy models provide general lessons to guide the realization of UV/IR mixing in more realistic theories.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗