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First attempt at quantifying uncertainties in ocean remote sensing reflectance satellite measurements. Based on 1000 iterations of Monte Carlo. Data source is a SeaWiFS 4-day composite, 2003. The uncertainty is for remote sensing reflectance (Rrs) at 443 nm.
This paper presents work done by the Mars 2020 Mission Planning Team to characterize landing site thermal environments. A process was developed to take in ground temperature simulation data for each landing site and efficiently discretize it into six thermal environment bins. The Mars 2020 Thermal Team then performed detailed heater and energy modeling in each of those environments. The heater modeling results were implemented into a Monte Carlo based surface mission model to understand mission performance impacts. The Mars 2020 Instrument Teams used the results to inform their design and to better understand how the thermal conditions at each landing site affected their instruments.
This paper presents work done by the Mars 2020 Mission Planning Team to characterize landing site thermal environments. A process was developed to take in ground temperature simulation data for each landing site and efficiently discretize it into six thermal environment bins. The Mars 2020 Thermal Team then performed detailed heater and energy modeling in each of those environments. The heater modeling results were implemented into a Monte Carlo based surface mission model to understand mission performance impacts. The Mars 2020 Instrument Teams used the results to inform their design and to better understand how the thermal conditions at each landing site affected their instruments.
This paper presents work done by the Mars 2020 Mission Planning Team to characterize landing site thermal environments. A process was developed to take in ground temperature simulation data for each landing site and efficiently discretize it into a handful of thermal bin environments. The Mars 2020 Thermal Team then performed detailed heater and energy modeling in each of those environments. The heater modeling results were implemented into a Monte Carlo based surface mission model to understand mission performance impacts. The Mars 2020 Instrument Teams used the results to inform their design and to better understand how the thermal conditions at each landing site affected their instruments.
The fluid models are frequently used to describe a non-thermal plasma such as a streamer discharge. The required electron transport data and rate coefficients for the fluid model are parametrized using the local field approximation (LFA) in first order models and the local-mean-energy approximation (LMEA) in second order models. We performed Monte Carlo simulations in Nitrogen gas with step changes in the E/N (reduced electric field) to study the behavior of the transport properties in the transient phase. During the transient phase of the simulation, we extract the instantaneous electron mean energy, which is different from the steady state mean electron energy, and the corresponding transport parameters and rate coefficients. Our results indicate that the mean electron energy is not a suitable parameter for mobility/drift of electrons due to big difference in momentum relaxation and energy relaxation. Furthermore, the high energy threshold rates such as ionization show a strong correlation to mean electron energy. In second order models where the energy-balance equation is solved, we suggest that it would rather be appropriate to use the local electric field to find electron drift velocity in gases such as Nitrogen and the local mean electron energy to determine the ionization and excitation rates.
This is the excel-based life cycle model that contains all the parameters and Monte Carlo simulation capabilities to model the techno-regions contained in the report: Life Cycle Analysis of Natural Gas Extraction and Power Generation: U.S. 2020 Emissions Profile. This is an update to a previous version (https://edx.netl.doe.gov/dataset/netl-natural-gas-lifecycle-model) and corrects a modeling error in the post-processing natural gas composition.
Single-nucleon knockout cross sections from fast secondary beams of the proton-drip-line nuclei 9 C, 13 O, and 17 Ne on a 9 Be target have been studied with emphasis on the production of resonance states. These states were identified by their invariant mass, and resonances with two-, three-, and five-body exit channels were examined. The measured cross sections for these states were compared with eikonal-model predictions using shell-model or variational Monte Carlo spectroscopic factors. The experimental yields were found to be suppressed relative to the model predictions, especially when a well-bound neutron or proton is removed. This suppression exceeds that found systematically in measured inclusive cross sections to particle-bound final states. In neutron knockout from 9 C and 13 O projectiles, this suppression of the unbound ground-state residuals yield is a factor of two to three times larger than that found in the bound final-state studies. Modifications to the structure of these systems due to coupling of the shell-model configurations to the continuum is expected to contribute to this extra suppression, especially when the final state is a near-threshold resonance. Furthermore, other considerations including the role of nuclear dynamics may be required to explain all the observed trends.
Nuclear data evaluation methods conventionally make the following assumptions: prior and posterior probability distribution functions (PDFs) of all model parameters and data are normal (Gaussian); the linear approximation is sufficiently accurate for minimization of a cost function (even for non-linear models); and that both the model (of, e.g., neutron cross section) and experimental data (including their covariance data) are perfect. These assumptions are inherent to the well-known generalized linear least squares (GLLS) minimization method commonly used for evaluations of resolved resonance region (RRR) neutron cross sections. However, these assumptions are often not justified due to the presence of non-normal PDFs, non-linear models (e.g. R -matrix formalism), and inherent imperfections in data and models (e.g. discrepant data sets, discrepancies between the previous evaluation and newly measured data, or imperfect covariance data). We remove the said assumptions in a mathematical framework of Bayes’ theorem, and implement it using the Metropolis-Hastings Monte Carlo method. Parameters of a new kind are introduced to parameterize inherent imperfections, e.g. , any discrepancies between the theoretical model and measured data. These new parameters enable evaluators to quantify their expert judgement about any discrepancies or imperfections in a reproducible manner. We demonstrate the framework with an ongoing evaluation of 233 U in the eV region using the ENDF-B/VIII library and transmission data measured by Guber, et al. , and compare the posterior parameters to those obtained by conventional evaluation methods.
In scanning transmission electron microscopy (STEM), spatial resolution is primarily influenced by the projected size of the electron probe within the specimen. In thin samples, a large semi-convergence angle enables a tightly focused beam and sub-nanometer resolution. However, in thick specimens, resolution is fundamentally limited by transverse beam broadening from multiple large-angle scattering events—for example, a probe with 10 mrad angular divergence can broaden by ∼100 nm over a 10 μm path. Since this broadening scales inversely with beam energy, MeV-STEM offers a promising route for high-resolution imaging in thick materials. To quantitatively assess this effect, we performed high-precision measurements at UCLA’s PEGASUS beamline, characterizing beam divergence and intensity profiles for 3–8 MeV electrons transmitted through a wedged-silicon sample of varying thickness. Our results reconcile discrepancies among analytical models and validate Monte Carlo simulations. Here, we find that increasing beam energy from 3.0 to 5.8 MeV reduces angular broadening by a factor of 2.6, with diminishing returns observed at 7.6 MeV. These findings provide a quantitative framework for optimizing MeV-STEM parameters in high-resolution imaging of thick biological and microelectronic specimens, and for guiding beam energy selection in other advanced imaging modes beyond STEM.
We compare the acoustic Su–Schrieffer–Heeger (SSH) model with two of its optical variants where the phonons are defined on either on the sites or bonds of the system. First, we discuss how to make fair comparisons between these models in any dimension by ensuring their dimensionless coupling λ and relevant phonon energies are the same. We then use determinant quantum Monte Carlo to perform nonperturbative and sign-problem-free simulations of all three models on one-dimensional chains at and away from half-filling. By comparing the results obtained from each model, we demonstrate that the optical and acoustic models produce near identical results within error bars for suitably chosen phonon energies and λ at half-filling. In contrast, the bond model has quantitatively different behavior due to its coupling to the q = 0 phonon mode. These differences also manifest in the total length of the chain, which shrinks for the bond model but not for the acoustic and optical models when λ ≠ 0. Furthermore, our results have important implications for quantum Monte Carlo modeling of SSH-like interactions, where these models are sometimes regarded as being interchangeable.
Abstract Summary Bayesian inference in biological modeling commonly relies on Markov chain Monte Carlo (MCMC) sampling of a multidimensional and non-Gaussian posterior distribution that is not analytically tractable. Here, we present the implementation of a practical MCMC method in the open-source software package PyBioNetFit (PyBNF), which is designed to support parameterization of mathematical models for biological systems. The new MCMC method, am, incorporates an adaptive move proposal distribution. For warm starts, sampling can be initiated at a specified location in parameter space and with a multivariate Gaussian proposal distribution defined initially by a specified covariance matrix. Multiple chains can be generated in parallel using a computer cluster. We demonstrate that am can be used to successfully solve real-world Bayesian inference problems, including forecasting of new Coronavirus Disease 2019 case detection with Bayesian quantification of forecast uncertainty. Availability and implementation PyBNF version 1.1.9, the first stable release with am, is available at PyPI and can be installed using the pip package-management system on platforms that have a working installation of Python 3. PyBNF relies on libRoadRunner and BioNetGen for simulations (e.g. numerical integration of ordinary differential equations defined in SBML or BNGL files) and Dask.Distributed for task scheduling on Linux computer clusters. The Python source code can be freely downloaded/cloned from GitHub and used and modified under terms of the BSD-3 license (https://github.com/lanl/pybnf). Online documentation covering installation/usage is available (https://pybnf.readthedocs.io/en/latest/). A tutorial video is available on YouTube (https://www.youtube.com/watch?v=2aRqpqFOiS4&t=63s). Supplementary information Supplementary data are available at Bioinformatics online.
Exposure estimates inside space vehicles, surface habitats, and high altitude aircrafts exposed to space radiation are highly influenced by secondary neutron production. The deterministic transport code HZETRN has been identified as a reliable and efficient tool for such studies, but improvements to the underlying transport models and numerical methods are still necessary. In this paper, the forward-backward (FB) and directionally coupled forward-backward (DC) neutron transport models are derived, numerical methods for the FB model are reviewed, and a computationally efficient numerical solution is presented for the DC model. Both models are compared to the Monte Carlo codes HETC-HEDS, FLUKA, and MCNPX, and the DC model is shown to agree closely with the Monte Carlo results. Finally, it is found in the development of either model that the decoupling of low energy neutrons from the light particle transport procedure adversely affects low energy light ion fluence spectra and exposure quantities. A first order correction is presented to resolve the problem, and it is shown to be both accurate and efficient.
Understanding of climate impact on ecosystems globally requires site-specific model calibration. Here we introduce a novel diffusion-based uncertainty quantification (DBUQ) method for efficient model calibration. DBUQ is a score-based diffusion model that leverages Monte Carlo simulation to estimate the score function and evaluates a simple neural network to quickly generate samples for approximating parameter posterior distributions. DBUQ is stable, efficient, and can effectively calibrate the model given diverse observations, thereby enabling rapid and site-specific model calibration on a global scale. This capability significantly advances Earth system modeling and our understanding of climate impacts on Earth systems. We demonstrate DBUQ's capability in E3SM land model calibration at the Missouri Ozark AmeriFlux forest site. Both synthetic and real-data applications indicate that DBUQ produces accurate parameter posterior distributions similar to those generated by Markov Chain Monte Carlo sampling but with 30X less computing time. This efficiency marks a significant stride in model calibration, paving the way for more effective and timely climate impact analyses.
Real-time flood model plays a pivotal role in averting urban flood damage, particularly when there is minimal lead time for preparatory measures. However, urban flood modeling in real-time often contends with inherent uncertainties arising from input data uncertainty and parameter ambiguities. Here this study introduces a real-time calibration (RTC) tool called Bayes_Opt-SWMM, specifically tailored for real-time urban flood modeling and uncertainty optimization. This tool leverages the Gaussian process-based Bayesian optimization algorithm and interfaces seamlessly with the Stormwater Management Model (SWMM). It integrates real-time model forcing data and flood monitoring collected through sensors and gauges which are strategically placed within critical locations of urban drainage systems. Our approach hinges on the Surrogate Model based Uncertainty Optimization (SMUO) concept, providing an avenue for enhancing real-time flood modeling. Bayes_Opt-SWMM runs the optimization process using a surrogate model called Gaussian Process emulator with two inference methods: (1) the Gaussian Process (GP) model and (2) Markov Chain Monte Carlo (MCMC) algorithm in GP model (GP_MCMC). Furthermore, three acquisition functions, namely Expected Improvement (EI), Maximum Probability of Improvement (MPI), and Lower Confidence Bound (LCB), facilitate optimal parameter fitting within the surrogate models. The efficiency of GP-based surrogate models in learning SWMM model parameters, leads to an improved uncertainty quantification and accelerated real-time flood modeling in urban areas. Overall, Bayes_Opt-SWMM emerges as a cost-effective and valuable tool for real-time flood modeling and monitoring, with significant potential for managing intelligent storm water systems in urban environments.
The analysis of selected CCD images of the coma of comet P/Halley is presented. The images were taken using specially designed filters that isolate regions of a comet's spectrum such that only sunlight which has been scattered by the dust in the coma is recorded. The modeling analysis objective is to make use of the skills developed in the development of Monte Carlo particle trajectory models for the distributions of gas species in cometary comae and to use those models as a basis for a new dust coma model. This model will include a self-consistant picture of the time-dependent dusty-gas dynamics of the inner coma and the three-dimensional time-dependent trajectories of the dust particles under the influence of solar gravity and solar radiation pressure in the outer coma. The model is intended to be used as a tool to analyze selected images from the two sets of CCD images with the hope that it will help the understanding of the effects of a number of important processes on the spatial morphology of the observed dust coma. The processes of importance to the observed dust coma include: (1) the dust particle size distribution function; (2) the terminal velocities of various sized dust particles in the inner coma; (3) the radiation scattering properties of dust particles, which are important both in terms of the observe scattered radiation and the radiation pressure acceleration on dust particles; (4) the fragmentation and/or vaporization of dust particles; and (5) the relative importance of CHON and silicate dust particles as they contribute both to the dusty-gasdynamics in the inner coma (that produce the dust particle terminal velocities) and to the observed spatial morphology on the outer dust coma.
NASA uses environment models such as ORDEM96 to characterize the long-term orbital debris collision hazard for spacecraft in LEO. Occasionally, however, there are breakups of satellites or rocket bodies that create enhanced collision hazard for a period of time. This enhanced collision hazard can pose increased risks to space operations - especially those involving manned missions where the tolerance for risk is very low. NASA has developed SBRAM to simulate the enhanced debris environment in the days and weeks that follow such a breakup. This simulation provides the kind of risk probabilities that can be used by mission planners to consider if changes are warranted for the mission. Announcements of breakups come to NASA from US Space Command as soon as they are identified. The pre-breakup orbit and time of breakup are used to determine the initial conditions of the explosion. SBRAM uses the latest explosion models developed at NASA to simulate a debris cloud for the breakup. The model uses a Monte Carlo technique to create a random debris cloud from the probability distributions in the breakup model. Each piece of debris randomly created in the cloud is propagated in a deterministic manner to include the effects of drag and other orbital perturbations. The detailed geometry of each simulated close approach to the target spacecraft is noted and logged and the collision probability is computed using an estimated probability density in down-range and cross-range positions of both the target spacecraft and debris object. The collision probability is computed from the overlap of these probability densities for each close-approach geometry and summed over all computed conjunctions. Cloud propagation runs over the desired time interval are then repeated until the scale of the collision risk can be estimated to a desired precision. This paper presents an overview of the SBRAM model and a number of examples, both real and hypothetical, to demonstrate its use. In addition, a number of different examples are shown how the data can be used by decision makers on issues such as spacecraft orientation and timing of EVAs.