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At least 577 records · Page 32

Higher-order adaptive finite-element methods for Kohn–Sham density functional theory

We present an efficient computational approach to perform real-space electronic structure calculations using an adaptive higher-order finite-element discretization of Kohn–Sham density-functional theory (DFT). To this end, we develop an a priori mesh-adaption technique to construct a close to optimal finite-element discretization of the problem. We further propose an efficient solution strategy for solving the discrete eigenvalue problem by using spectral finite-elements in conjunction with Gauss–Lobatto quadrature, and a Chebyshev acceleration technique for computing the occupied eigenspace. The proposed approach has been observed to provide a staggering 100–200-fold computational advantage over the solution of a generalized eigenvalue problem. Using the proposed solution procedure, we investigate the computational efficiency afforded by higher-order finite-element discretizations of the Kohn–Sham DFT problem. Our studies suggest that staggering computational savings—of the order of 1000-fold—relative to linear finite-elements can be realized, for both all-electron and local pseudopotential calculations, by using higher-order finite-element discretizations. On all the benchmark systems studied, we observe diminishing returns in computational savings beyond the sixth-order for accuracies commensurate with chemical accuracy, suggesting that the hexic spectral-element may be an optimal choice for the finite-element discretization of the Kohn–Sham DFT problem. A comparative study of the computational efficiency of the proposed higher-order finite-element discretizations suggests that the performance of finite-element basis is competing with the plane-wave discretization for non-periodic local pseudopotential calculations, and compares to the Gaussian basis for all-electron calculations to within an order of magnitude. Further, we demonstrate the capability of the proposed approach to compute the electronic structure of a metallic system containing 1688 atoms using modest computational resources, and good scalability of the present implementation up to 192 processors.

97 MATHEMATICS AND COMPUTING↗

A Fully Computable A Posteriori Error Estimate for the Stokes Equations on Polytopal Meshes

Here in this paper, we present a simple a posteriori error estimate for the weak Galerkin finite element method for the Stokes equation. This residual type estimator can be applied to general meshes such as polytopal mesh or meshes with hanging nodes. The reliability and efficiency of the estimator are proved in this paper. Five numerical tests demonstrate the effectiveness and flexibility of the adaptive mesh refinement guided by the designed error estimator.

finite element methods↗

Second-order accurate interface- and discontinuity-aware diffusion solvers in two and three dimensions

A numerical scheme is developed for two- and three-dimensional time-dependent diffusion equations in numerical simulations involving mixed cells. The focus of the development is on the formulations for both transient and steady states, the property for large time steps, second-order accuracy in both space and time, the correct treatment of the discontinuity in material properties, and the handling of mixed cells. For a mixed cell, interfaces between materials are reconstructed within the cell so that each of resulting sub-cells contains only one material and the material properties of each sub-cell are known. Diffusion equations are solved on the resulting polyhedral mesh even if the original mesh is structured. The discontinuity of material properties between different materials is correctly treated based on governing physics principles. The treatment is exact for arbitrarily strong discontinuity. The formulae for effective diffusion coefficients across interfaces between materials are derived for general polyhedral meshes. The scheme is general in two and three dimensions. Since the scheme to be developed in this paper is intended for multi-physics code with adaptive mesh refinement (AMR), we present the scheme on mesh generated from AMR. The correctness and features of the scheme are demonstrated for transient problems and steady states in one-, two-, and three-dimensional simulations for heat conduction and radiation heat transfer. The test problems involve dramatically different materials.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

A Robust and Scalable Software Library for Parallel Adaptive Refinement on Unstructured Meshes

The design and implementation of Pyramid, a software library for performing parallel adaptive mesh refinement (PAMR) on unstructured meshes, is described. This software library can be easily used in a variety of unstructured parallel computational applications, including parallel finite element, parallel finite volume, and parallel visualization applications using triangular or tetrahedral meshes. The library contains a suite of well-designed and efficiently implemented modules that perform operations in a typical PAMR process. Among these are mesh quality control during successive parallel adaptive refinement (typically guided by a local-error estimator), parallel load-balancing, and parallel mesh partitioning using the ParMeTiS partitioner. The Pyramid library is implemented in Fortran 90 with an interface to the Message-Passing Interface (MPI) library, supporting code efficiency, modularity, and portability. An EM waveguide filter application, adaptively refined using the Pyramid library, is illustrated.

Lou, John Z.↗

A Posteriori Error Estimation for Finite Volume and Finite Element Approximations Using Broken Space Approximation

We consider a posteriori error estimates for finite volume and finite element methods on arbitrary meshes subject to prescribed error functionals. Error estimates of this type are useful in a number of computational settings: (1) quantitative prediction of the numerical solution error, (2) adaptive meshing, and (3) load balancing of work on parallel computing architectures. Our analysis recasts the class of Godunov finite volumes schemes as a particular form of discontinuous Galerkin method utilizing broken space approximation obtained via reconstruction of cell-averaged data. In this general framework, weighted residual error bounds are readily obtained using duality arguments and Galerkin orthogonality. Additional consideration is given to issues such as nonlinearity, efficiency, and the relationship to other existing methods. Numerical examples are given throughout the talk to demonstrate the sharpness of the estimates and efficiency of the techniques. Additional information is contained in the original.

Barth, Timothy J.↗

Euler and Navier-Stokes computations for two-dimensional geometries using unstructured meshes

A general purpose unstructured mesh solver for steady-state two-dimensional inviscid and viscous flows is described. The efficiency and accuracy of the method are enhanced by the simultaneous use of adaptive meshing and an unstructured multigrid technique. A method for generating highly stretched triangulations in regions of viscous flow is outlined, and a procedure for implementing an algebraic turbulence model on unstructured meshes is described. Results are shown for external and internal inviscid flows and for turbulent viscous flow over a multi-element airfoil configuration.

Mavriplis, D. J.↗

Euler and Navier-Stokes computations for airfoil geometries using unstructured meshes

A general purpose unstructured mesh solver for steady-state two-dimensional inviscid and viscous flows is described. The efficiency and accuracy of the method are enhanced by the simultaneous use of adaptive meshing and an unstructured multigrid technique. A method for generating highly stretched triangulations in regions of viscous flow is outlined, and a procedure for implementing an algebraic turbulence model on unstructured meshes is described. Results are shown for external and internal inviscid flows and for turbulent viscous flow over a multi-element airfoil configuration.

Mavriplis, D. J.↗

Resolving the Formation of Protogalaxies: Feedback from the First Stars - 3

The first stars form in dark matter halos of masses 106 M as suggested by an increasing number of numerical simulations. Radiation feedback from these stars expels most of the gas from the shallow potential well of their surrounding dark matter halos.We use cosmological adaptive mesh refinement simulations that include self-consistent Population III star formation and feedback to examine the properties of assembling early dwarf galaxies. Accurate radiative transport is modeled with adaptive ray tracing. We include supernova explosions and follow the metal enrichment of the intergalactic medium. The calculations focus on the formation of several dwarf galaxies and their progenitors. In these halos, baryon fractions in 10(exp 8) Stelar Mass halos decrease by a factor of 2 with stellar feedback and by a factor of 3 with supernova explosions.We find that radiation feedback and supernova explosions increase gaseous spin parameters up to a factor of 4 and vary with time. Stellar feedback, supernova explosions, and H2 cooling create a complex, multiphase interstellar medium whose densities and temperatures can span up to 6 orders of magnitude at a given radius. The pair-instability supernovae of Population III stars alone enrich the halos with virial temperatures of 10(exp 4) K to approximately 10(exp -3) of solar metallicity.We find that 40% of the heavy elements resides in the intergalactic medium (IGM) at the end of our calculations. The highest metallicity gas exists in supernova remnants and very dilute regions of the IGM.

Wise, John H.↗

Issues in Equation of State data generation for Hot Dense MatterA Note on Generalized Radial Mesh Generation for Plasma Electronic Structure

Precise electronic structure calculations of ions in plasmas benefit from optimized numerical radial meshes. A new closed form expression for obtaining non-linear parameters for the efficient generation of analytic log-linear radial meshes is presented. In conjunction with the (very simple) algorithm for the rapid high precision evaluation of Lambert's W-function, the above identity allows the precise construction of generalized log-linear radial meshes adapted to various constraints.

74 ATOMIC AND MOLECULAR PHYSICS↗

LES of Vaporizing Gasoline Sprays Considering Multi-Injection Averaging and Grid-Convergent Mesh Resolution

A state-of-the-art spray modeling methodology, recently presented by Senecal et al. [ , , ], is applied to Large Eddy Simulations (LES) of vaporizing gasoline sprays. Simulations of non-combusting Spray G (gasoline fuel) from the Engine Combustion Network are performed. Adaptive mesh refinement (AMR) with cell sizes from 0.09 mm to 0.5 mm are utilized to further demonstrate grid convergence of the dynamic structure LES model for the gasoline sprays. Grid settings are recommended to optimize the accuracy/runtime tradeoff for LES-based spray simulations at different injection pressure conditions typically encountered in gasoline direct injection (GDI) applications. The influence of LES sub-grid scale (SGS) models is explored by comparing the results from dynamic structure and Smagorinsky based models against simulations without any SGS model. Twenty different realizations are simulated by changing the random number seed used in the spray sub-models. It is shown that for global quantities such as spray penetration, comparing a single LES simulation to experimental data is reasonable. Through a detailed analysis using the relevance index (RI) criteria, recommendations are made regarding the minimum number of LES realizations required for accurate prediction of the gasoline sprays.

Som, Sibendu↗

Heating and Large Scale Dynamics of the Solar Corona

The effort was concentrated in the areas: coronal heating mechanism, unstructured adaptive grid algorithms, numerical modeling of magnetic reconnection in the MRX experiment: effect of toroidal magnetic field and finite pressure, effect of OHMIC heating and vertical magnetic field, effect of dynamic MESH adaption.

Schnack, Dalton D.↗

Mesh quality control for multiply-refined tetrahedral grids

A new algorithm for controlling the quality of multiply-refined tetrahedral meshes is presented in this paper. The basic dynamic mesh adaption procedure allows localized grid refinement and coarsening to efficiently capture aerodynamic flow features in computational fluid dynamics problems; however, repeated application of the procedure may significantly deteriorate the quality of the mesh. Results presented show the effectiveness of this mesh quality algorithm and its potential in the area of helicopter aerodynamics and acoustics.

Biswas, Rupak↗

Multigrid techniques for unstructured meshes

An overview of current multigrid techniques for unstructured meshes is given. The basic principles of the multigrid approach are first outlined. Application of these principles to unstructured mesh problems is then described, illustrating various different approaches, and giving examples of practical applications. Advanced multigrid topics, such as the use of algebraic multigrid methods, and the combination of multigrid techniques with adaptive meshing strategies are dealt with in subsequent sections. These represent current areas of research, and the unresolved issues are discussed. The presentation is organized in an educational manner, for readers familiar with computational fluid dynamics, wishing to learn more about current unstructured mesh techniques.

Mavriplis, D. J.↗

A 3D front tracking method on a CPU/GPU system

We describe the method to port a sequential 3D interface tracking code to a GPU with CUDA. The interface is represented as a triangular mesh. Interface geometry properties and point propagation are performed on a GPU. Interface mesh adaptation is performed on a CPU. The convergence of the method is assessed from the test problems with given velocity fields. Performance results show overall speedups from 11 to 14 for the test problems under mesh refinement. We also briefly describe our ongoing work to couple the interface tracking method with a hydro solver.

99 GENERAL AND MISCELLANEOUS↗

How Very Massive Metal-Free Stars Start Cosmological Reionization

The initial conditions and relevant physics for the formation of the earliest galaxies are well specified in the concordance cosmology. Using ab initio cosmological Eulerian adaptive mesh refinement radiation hydrodynamical calculations, we discuss how very massive stars start the process of cosmological reionization. The models include nonequilibrium primordial gas chemistry and cooling processes and accurate radiation transport in the case B approximation using adaptively ray-traced photon packages, retaining the time derivative in the transport equation. Supernova feedback is modeled by thermal explosions triggered at parsec scales. All calculations resolve the local Jeans length by at least 16 grid cells at all times and as such cover a spatial dynamic range of approx.10(exp 6). These first sources of reionization are highly intermittent and anisotropic and first photoionize the small-scale voids surrounding the halos they form in, rather than the dense filaments they are embedded in. As the merging objects form larger, dwarf-sized galaxies, the escape fraction of UV radiation decreases and the H II regions only break out on some sides of the galaxies, making them even more anisotropic. In three cases, SN blast waves induce star formation in overdense regions that were formed earlier from ionization front instabilities. These stars form tens of parsecs away from the center of their parent DM halo. Approximately five ionizing photons are needed per sustained ionization when star formation in 10(exp 6) stellar Mass halos is dominant in the calculation. As the halos become larger than approx.10(exp 7) Stellar Mass, the ionizing photon escape fraction decreases, which in turn increases the number of photons per ionization to 15-50, in calculations with stellar feedback only. Radiative feedback decreases clumping factors by 25% when compared to simulations without star formation and increases the average temperature of ionized gas to values between 3000 and 10,000 K.

Wise, John H.↗

Parallel adaptive Cartesian upwind methods for shock-driven multiphysics simulation

The multiphysics fluid-structure interaction simulation of shock-loaded thin-walled structures requires the dynamic coupling of a shock-capturing flow solver to a solid mechanics solver for large deformations. By combining a Cartesian embedded boundary approach with dynamic mesh adaptation a generic software framework for such flow solvers has been constructed that allows easy exchange of the specific hydrodynamic finite volume upwind scheme and coupling to various explicit finite element solid dynamics solvers. The paper gives an overview of the computational approach and presents first simulations that couple the software to the general purpose solid dynamics code DYNA3D.

99 GENERAL AND MISCELLANEOUS↗

Sparse-grid discontinuous Galerkin methods for the Vlasov–Poisson–Lenard–Bernstein model

Sparse-grid methods have recently gained interest in reducing the computational cost of solving high-dimensional kinetic equations. In this paper, we construct adaptive and hybrid sparse-grid methods for the Vlasov–Poisson–Lenard–Bernstein (VPLB) model. This model has applications to plasma physics and is simulated in two reduced geometries: a 0x3v space homogeneous geometry and a 1x3v slab geometry. Here we use the discontinuous Galerkin (DG) method as a base discretization due to its high-order accuracy and ability to preserve important structural properties of partial differential equations. We utilize a multiwavelet basis expansion to determine the sparse-grid basis and the adaptive mesh criteria. We analyze the proposed sparse-grid methods on a suite of three test problems by computing the savings afforded by sparse-grids in comparison to standard solutions of the DG method. The results are obtained using the adaptive sparse-grid discretization library ASGarD.

97 MATHEMATICS AND COMPUTING↗