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At least 577 records · Page 32

Searching for Low-mass Population III Stars Disguised as White Dwarfs

It is uncertain whether or not low-mass Population III stars ever existed. While limits on the number density of Population III stars with M {sub *} ≈ 0.8 M {sub ⊙} have been derived, using Sloan Digital Sky Survey (SDSS) data, little is known about the occurrence of Population III stars at lower masses. In the absence of reliable parallaxes, the spectra of metal-poor main-sequence (MPMS) stars with M {sub *} ≲ 0.8 M {sub ⊙} can easily be confused with those of cool white dwarfs. To resolve this ambiguity, in this paper we present a classifier that differentiates between MPMS stars and white dwarfs, based on photometry and/or spectroscopy without the use of parallax information. We build and train our classifier using state-of-the-art theoretical spectra, and evaluate it on existing SDSS-based classifications for objects with reliable Gaia DR2 parallaxes. We then apply our classifier to a large catalog of objects with SDSS photometry and spectroscopy to search for MPMS candidates. We discover several previously unknown, extremely metal-poor (EMP) candidate stars, and recover numerous confirmed EMP stars already noted in the literature. We conclude that archival SDSS spectroscopy has already been exhaustively searched for EMP stars. We predict that the lowest-mass stars of primordial composition will have redder optical-to-infrared colors than cool white dwarfs at constant effective temperature, due to surface gravity-dependent collision-induced absorption from molecular hydrogen. We suggest that the application of our classifier to data produced by next-generation spectroscopic surveys will set stronger constraints on the number density of low-mass Population III stars in the Milky Way.

47 OTHER INSTRUMENTATION↗

The imprint of cosmic voids from the DESI Legacy Survey DR9 Luminous Red Galaxies in the Planck 2018 lensing map through spectroscopically calibrated mocks

The cross-correlation of cosmic voids with the lensing convergence (κ) map of the Cosmic Microwave Background (CMB) fluctuations provides a powerful tool to refine our understanding of the current cosmological model. However, several studies have reported a moderate tension (up to ∼2σ) between the lensing imprint of cosmic voids on the observed CMB and the ΛCDM signal predicted by simulations. To address this “lensing-is-low” tension and to obtain new, precise measurements of the signal, we exploit the large DESI Legacy Survey Luminous Red Galaxy (LRG) data set, covering approximately 19 500 deg 2 of the sky and including about 10 million LRGs at z < 1.05. Our ΛCDM template was created using the Buzzard mocks, which we specifically calibrated to match the clustering properties of the observed galaxy sample by exploiting more than one million DESI spectra. We identified our catalogs of 3D voids in the range 0.35 < z < 0.95 and cross-correlated them through a stacking methodology, dividing the sample into bins according to the redshift and λv values of the voids. For the full void sample, we report a 14σ detection of the lensing signal, with A κ = 1.016 ± 0.054, which increases to 17σ when considering the void-in-void (A κ = 0.944 ± 0.064) and the void-in-cloud (A κ = 0.975 ± 0.060) populations individually, the highest detection significance for studies of this kind. We observe a full agreement between observations and ΛCDM mocks across all redshift bins, sky regions, and void populations considered. In addition to these findings, our analysis highlights the importance of accurately matching sparseness and redshift error distributions between mocks and observations, as well as the role of λ v in enhancing the signal-to-noise ratio through void population discrimination.

79 ASTRONOMY AND ASTROPHYSICS↗

Photometry of Outer Solar System Objects from the Dark Energy Survey. I. Photometric Methods, Light-curve Distributions, and Trans-Neptunian Binaries

We report the methods of and initial scientific inferences from the extraction of precision photometric information for the >800 trans-Neptunian objects (TNOs) discovered in the images of the Dark Energy Survey (DES). Scene-modeling photometry is used to obtain shot-noise-limited flux measures for each exposure of each TNO, with background sources subtracted. Comparison of double-source fits to the pixel data with single-source fits are used to identify and characterize two binary TNO systems. A Markov Chain Monte Carlo method samples the joint likelihood of the intrinsic colors of each source as well as the amplitude of its flux variation, given the time series of multiband flux measurements and their uncertainties. A catalog of these colors and light-curve amplitudes A is included with this publication. We show how to assign a likelihood to the distribution q(A) of light-curve amplitudes in any subpopulation. Using this method, we find decisive evidence (i.e., evidence ratio <0.01) that cold classical (CC) TNOs with absolute magnitude 6 < H$_{r}$ < 8.2 are more variable than the hot classical (HC) population of the same H$_{r}$, reinforcing theories that the former form in situ and the latter arise from a different physical population. Resonant and scattering TNOs in this H$_{r}$ range have variability consistent with either the HCs or CCs. DES TNOs with H$_{r}$ < 6 are seen to be decisively less variable than higher-H$_{r}$ members of any dynamical group, as expected. More surprising is that detached TNOs are decisively less variable than scattering TNOs, which requires them to have distinct source regions or some subsequent differential processing.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

PNNL DataHub NIAID Program Project: Modeling Host Responses to Understand Severe Human Virus Infections, Multi-Omic Viral Dataset Catalog Collection

The National Institute of Allergy and Infectious Diseases (NIAID) "Modeling Host Responses to Understand Severe Human Virus Infections" program project was a highly integrated and comprehensive systems biology research core, funded by the National Institute of Health (U19AI106772) from 2013-06-01 to 2018-05-31, investigating the complex host response to category A, B, and C priority pathogen infections. Resulting project deliverables include an extensive comprehensive collections of linked primary and secondary transformation viral experimental infection data. Here we provide a never before released comprehensive infectious disease collection of primary and secondary transformation multi-Omics data profiling a series of priority pathogen primary experimental studies for enhanced open access to viral Omics lifecycle datasets and project metadata. Using a highly integrated and multidisciplinary approach, linked primary data and metadata supporting secondary normalization datasets, provide critical information necessary for research reproducibility and long-term preservation. Enabling on-demand data access for research community consumption and developer reuse, serves to support new mechanistic insights and discoveries into host-pathogen interactions for aiding future biohazard data preparedness efforts in emergency response to global health crises involving viral infection.

59 BASIC BIOLOGICAL SCIENCES↗

Seismic monitoring of EGS fracture stimulations at Utah FORGE (Part 1): Time-lapse variations of b-values and Shear-wave Splitting Rates of induced microearthquakes

Characterizing geologic formations near geothermal wells is crucial for efficient extraction of subsurface geothermal energy resources. To monitor effective fracture stimulation of enhanced geothermal systems (EGS), we analyze a catalog of induced microearthquakes to characterize seismicity induced by Phase 2C fracture stimulations of the Utah FORGE project and derive the b-values for 424 induced microearthquakes in three stages of fracture stimulation. Here, we find the time-lapse variations of these b-values. We apply eigenvector rotation and waveform correlation to 3C geophone data to separate fast S 1 and slow S 2 waves, determine their directions, measure their lag time, and calculate the S-wave splitting rate (SSR) for six induced microearthquakes in Stage 1 and 21 in Stage 3. Both SSR values and b-values increase with time. The increase in these values may be related to heavily fractured zones created by fracture stimulations during Stage 2 injections. Large and highly variable SSR values in Stage 3 may reflect heterogeneities in the fracture zones. Time-lapse variations of SSR values and b-values may be one of the most useful approaches to monitoring and characterizing the effectiveness and efficiency of various types of fracture stimulations.

58 GEOSCIENCES↗

The Linear Point Standard Ruler with DESI DR1 and DR2 Data

The linear point, a purely geometric feature in the monopole of the two-point correlation function, has been proposed as an alternative standard ruler. Compared to the peak in the correlation function, it is more robust to late-time nonlinear effects at the percent level. In light of improved simulations and high quality data, we revisit the robustness of the linear point and use it as an alternative to template-based fitting approaches typically used in BAO analyses. We present the linear point measurements on galaxy samples from the first and second data releases (DR1 and DR2) of the DESI survey. We convert the linear point into a dimensionless parameter $α_{iso,LP}$, defined as the ratio of the linear point in the fiducial cosmology and the observed value, analogous to the isotropic BAO scaling parameter $α_{iso}$ used in previous BAO measurements. Using the 2nd generation of AbacusSummit mock catalogs, we find that linear point measurements are more precise when calculated in the post-reconstruction regime with 15-60% smaller uncertainties than those pre-reconstruction. We find a systematic shift in the linear point measurements compared against the isotropic BAO measurements in mocks; we attribute this to the isotropic damping parameter responsible for smearing the linear point in the nonlinear regime. We propose a sample-dependent correction that mitigates the impact of late-time nonlinear effects. While this introduces a cosmology dependence in an otherwise model-independent measurement, this is necessary given the sub-percent precision dictated by current cosmological surveys. Comparing $α_{iso,LP}$ with isotropic BAO measurements made on the DESI DR1 and DR2 galaxy samples, we find excellent agreement after applying this correction, particularly post-reconstruction. We discuss future scope regarding cosmological inference with linear point measurements.

Uberoi, N. [Yale U.] (ORCID:0000000275179629)↗

Hyper Suprime-Cam Year 3 results: Cosmology from galaxy clustering and weak lensing with HSC and SDSS using the minimal bias model

Here, we present cosmological parameter constraints from a blind joint analysis of three two-point correlation functions measured from the Year 3 Hyper Suprime-Cam (HSC-Y3) imaging data, covering about 416 deg 2 , and the SDSS DR11 spectroscopic galaxies spanning the redshift range [0.15, 0.70]. We subdivide the SDSS galaxies into three luminosity-cut, and therefore nearly volume-limited samples separated in redshift, each of which acts as a large-scale structure tracer characterized by the measurement of the projected correlation function, w p ⁡(R). We also use the measurements of the galaxy-galaxy weak-lensing signal Δ⁢Σ⁡(R) for each of these SDSS samples which act as lenses for a secure sample of source galaxies selected from the HSC-Y3 shape catalog based on their photometric redshifts. We combine these measurements with the cosmic shear correlation functions, ξ ± ⁡($\vartheta$) measured for our HSC source sample. We model these observables with the minimal bias model of the galaxy clustering observables in the context of a flat Λ⁢CDM cosmology. We use conservative scale cuts, R >12 and 8⁢ℎ -1 Mpc for Δ⁢Σ and w p , respectively, where the minimal bias model is valid, in addition to conservative prior on the residual bias in the mean redshift of the HSC photometric source galaxies. We present various validation tests of our model as well as analysis methods. Our baseline analysis yields S 8 = $0.77⁢5^{+0.043}_{-0.038}$ (68% C.I.) for the Λ⁢CDM model, after marginalizing over uncertainties in other parameters. Our value of S 8 is consistent with that from the Planck 2018 data, but the credible interval of our result is still relatively large. We show that various internal consistency tests based on different splits of the data are passed. Our results are statistically consistent with those of a companion paper, which extends this analysis to smaller scales with an emulator-based halo model, using Δ⁢Σ⁡(R) and w p ⁡(R) down to R >3 and 2⁢ℎ -1 Mpc, respectively.

79 ASTRONOMY AND ASTROPHYSICS↗

IceCube Search for Neutrinos Coincident with Compact Binary Mergers from LIGO-Virgo’s First Gravitational-wave Transient Catalog

Using the IceCube Neutrino Observatory, we search for high-energy neutrino emission coincident with compact binary mergers observed by the LIGO and Virgo gravitational-wave (GW) detectors during their first and second observing runs. In this paper, we present results from two searches targeting emission coincident with the sky localization of each GW event within a 1000 s time window centered around the reported merger time. One search uses a model-independent unbinned maximum-likelihood analysis, which uses neutrino data from IceCube to search for pointlike neutrino sources consistent with the sky localization of GW events. The other uses the Low-Latency Algorithm for Multi-messenger Astrophysics, which incorporates astrophysical priors through a Bayesian framework and includes LIGO-Virgo detector characteristics to determine the association between the GW source and the neutrinos. No significant neutrino coincidence is seen by either search during the first two observing runs of the LIGO-Virgo detectors. We set upper limits on the time-integrated neutrino emission within the 1000 s window for each of the 11 GW events. These limits range from 0.02 to 0.7 GeV cm -2 . We also set limits on the total isotropic equivalent energy, E iso , emitted in high-energy neutrinos by each GW event. These limits range from 1.7 × 10 51 to 1.8 × 10 55 erg. We conclude with an outlook for LIGO-Virgo observing run O3, during which both analyses are running in real time.

79 ASTRONOMY AND ASTROPHYSICS↗

DEEPEN 3D PFA Favorability Models and 2D Favorability Maps at Newberry Volcano

DEEPEN stands for DE-risking Exploration of geothermal Plays in magmatic ENvironments. Part of the DEEPEN project involved developing and testing a methodology for a 3D play fairway analysis (PFA) for multiple play types (conventional hydrothermal, superhot EGS, and supercritical). This was tested using new and existing geoscientific exploration datasets at Newberry Volcano. This GDR submission includes images, data, and models related to the 3D favorability and uncertainty models and the 2D favorability and uncertainty maps. The DEEPEN PFA Methodology is based on the method proposed by Poux et al. (2020), which uses the Leapfrog Geothermal software with the Edge extension to conduct PFA in 3D. This method uses all available data to build a 3D geodata model which can be broken down into smaller blocks and analyzed with advanced geostatistical methods. Each data set is imported into a 3D model in Leapfrog and divided into smaller blocks. Conditional queries can then be used to assign each block an index value which conditionally ranks each block's favorability, from 0-5 with 5 being most favorable, for each model (e.g., lithologic, seismic, magnetic, structural). The values between 0-5 assigned to each block are referred to as index values. The final step of the process is to combine all the index models to create a favorability index. This involves multiplying each index model by a given weight and then summing the resulting values. The DEEPEN PFA Methodology follows this approach, but split up by the specific geologic components of each play type. These components are defined as follows for each magmatic play type: 1. Conventional hydrothermal plays in magmatic environments: Heat, fluid, and permeability 2. Superhot EGS plays: Heat, thermal insulation, and producibility (the ability to create and sustain fractures suitable for and EGS reservoir) 3. Supercritical plays: Heat, supercritical fluid, pressure seal, and producibility (the proper permeability and pressure conditions to allow production of supercritical fluid) More information on these components and their development can be found in Kolker et al., 2022. For the purposes of subsurface imaging, it is easier to detect a permeable fluid-filled reservoir than it is to detect separate fluid and permeability components. Therefore, in this analysis, we combine fluid and permeability for conventional hydrothermal plays, and supercritical fluid and producibility for supercritical plays. More information on this process is described in the following sections. We also project the 3D favorability volumes onto 2D surfaces for simplified joint interpretation, and we incorporate an uncertainty component. Uncertainty was modeled using the best approach for the dataset in question, for the datasets where we had enough information to do so. Identifying which subsurface parameters are the least resolved can help qualify current PFA results and focus future efforts in data collection. Where possible, the resulting uncertainty models/indices were weighted using the same weights applied to the respective datasets, and summed, following the PFA methodology above, but for uncertainty. There are two different versions of the Leapfrog model and associated favorability models: - v1.0: The first release in June 2023 - v2.1: The second release, with improvements made to the earthquake catalog (included additional identified events, removed duplicate events), to the temperature model (fixed a deep BHT), and to the index models (updated the seismicity-heat source index models for supercritical and EGS, and the resistivity-insulation index models for all three play types). Also uses the jet color map rather than the magma color map for improved interpretability. - v2.1.1: Updated to include v2.0 uncertainty results (see below for uncertainty model versions) There are two different versions of the associated uncertainty models: - v1.0: The first release in June 2023 - v2.0: The se...

15 GEOTHERMAL ENERGY↗

From the Starship Enterprise to Los Alamos National Laboratory: Artificial Intelligence and Machine Learning in the NSRC

Artificial Intelligence (AI) conjures up different emotions in different people. Some view it with fear, imagining a malevolent AI similar to Skynet in the Terminator movies. Others see something benevolent, such as the character Data in Star Trek: The Next Generation. Still others see it as a means to advance the frontiers of science, engineering, and technology to new levels not possible through traditional means. At the National Security Research Center (NSRC or the Center), we see AI as a tool to help us go through the monumental tasks we have in digitizing, cataloging, and searching our collections.

97 MATHEMATICS AND COMPUTING↗

The Fermi-LAT Lightcurve Repository

The Fermi Large Area Telescope (LAT) lightcurve repository (LCR) is a publicly available, continually updated library of gamma-ray lightcurves of variable Fermi-LAT sources generated over multiple timescales. The Fermi-LAT LCR aims to provide publication-quality lightcurves binned on timescales of 3, 7, and 30 days for 1525 sources deemed variable in the source catalog of the first 10 yr of Fermi-LAT observations. The repository consists of lightcurves generated through full likelihood analyses that model the sources and the surrounding region, providing fluxes and photon indices for each time bin. The LCR is intended as a resource for the time-domain and multimessenger communities by allowing users to search LAT data quickly to identify correlated variability and flaring emission episodes from gamma-ray sources. We describe the sample selection and analysis employed by the LCR and provide an overview of the associated data access portal.

79 ASTRONOMY AND ASTROPHYSICS↗

The DESI Y1 RR Lyrae catalog I: Empirical modeling of the cyclic variation of spectroscopic properties and a chemodynamical analysis of the outer halo

We present the catalog of RR Lyrae stars observed in the first year of operations of the Dark Energy Spectroscopic Instrument (DESI) survey. This catalog contains 6,240 RR Lyrae stars out to $\sim100$ kpc from the Galactic center and over 12,000 individual epochs with homogeneously-derived stellar atmospheric parameters. We introduce a novel methodology to model the cyclical variation of the spectroscopic properties of RR Lyrae from single-epoch measurements. We employ this method to infer the radial velocity and effective temperature variation of fundamental mode and first-overtone RR Lyrae stars and to determine their systemic velocities and mean temperatures. For fundamental mode pulsators, we obtain radial velocity curves with amplitudes of $\sim$30--50 km s$^{-1}$ and effective temperature curves with 300--1,000 K variations, whereas for first-overtone pulsators these amplitudes are $\sim20$ km s$^{-1}$ and $\sim 600$ K, respectively. We use our sample to study the metallicity distribution of the halo and its dependence on Galactocentric distance ($R_{\rm GC}$). Using a radius-dependent mixture model, we split the data into chemodynamically distinct components and find that our inner halo sample ($R_{\rm GC}\lesssim50$ kpc) is predominantly composed of stars with [Fe/H] $\sim-1.5$ dex and largely radial orbits (with an anisotropy parameter $\beta\sim0.94$), that we associate with the Gaia-Sausage-Enceladus merger event. Stars in the outer halo field exhibit a broader and more metal-poor [Fe/H] distribution with more circular orbits ($\beta\sim0.39$). The metallicity gradient of the metal-rich and the metal-poor components is found to be $0.005$ and $0.010$ dex kpc$^{-1}$, respectively. Our catalog highlights DESI's tantalizing potential for studying the Milky Way and the pulsation properties of RR Lyrae stars in the era of large spectroscopic surveys.

79 ASTRONOMY AND ASTROPHYSICS↗

Dynamic Earthquake Triggering in Southern California in High Resolution: Intensity, Time Decay, and Regional Variability

Abstract Earthquake triggering by seismic waves has been recognized as a phenomenon for nearly 30 years. However, our ability to study dynamic triggering has been limited by our ability to capture the triggering stresses accurately and record the resultant earthquakes. Here we use full waveforms from a dense seismic network and a modern, high‐resolution seismic catalog to measure triggering in Southern California from 2008 to 2017 based on interevent time ratios. We find that the fractional seismicity rate change, which we term triggering intensity or triggerability, as a function of peak strain change for the period of ∼20 s due to distant earthquakes is monotonically increasing and compatible with earlier measurements made with a disjoint data set from 1984 to 2008. A triggering strain of 1 microstrain is equivalent to the local productivity generated by an M 1.8 earthquakes. This result implies that a prediction of seismicity rate changes can be made based on recorded ground shaking using the same formalism as currently used for aftershock prediction. For a teleseismic event, this small level of triggering occurs throughout the region and thus aggregates to a regional effect. We find that the triggering rate decays after the triggerer follows an Omori‐Utsu law, but at a much slower rate than a typical aftershock sequence. The slow decay rate suggests that an ancillary process such as creep or fluid flow must be part of dynamic triggering. The prevalence of triggering in areas of creep or fluid involvement reinforces this inference. A triggering cascade of secondary earthquakes is insufficient to explain the data.

Miyazawa, Masatoshi↗

Robustness of the Galactic Center excess morphology against masking

The Galactic Center excess (GCE) remains an enduring mystery, with leading explanations being annihilating dark matter or an unresolved population of millisecond pulsars. Analyzing the morphology of the GCE provides critical clues to identify its exact origin. We investigate the robustness of the inferred GCE morphology against the effects of masking, an important step in the analysis where the gamma-ray emission from point sources and the galactic disk are excluded. Using different masks constructed from Fermi point source catalogs and a wavelet method, we find that the GCE morphology, particularly its ellipticity and cuspiness, is relatively independent of the choice of mask for energies above 2–3 GeV. The GCE morphology systematically favors an approximately spherical shape, as expected for dark matter annihilation. Compared to various stellar bulge profiles, a spherical dark matter annihilation profile better fits the data across different masks and galactic diffuse emission backgrounds, except for the stellar bulge profile which provides a similar fit to the data. Modeling the GCE with two components, one from dark matter annihilation and one tracing the Coleman bulge, we find this two-component model outperforms any single component or combinations of dark matter annihilation and other stellar bulge profiles. Uncertainty remains about the exact fraction contributed by each component across different background models and masks. Furthermore, when the Coleman bulge dominates, its corresponding spectrum lacks characteristics typically associated with millisecond pulsars, suggesting that it mostly models the emission from other sources instead of the GCE that is still present and spherically symmetric.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Enabling Early Transient Discovery in LSST via Difference Imaging with DECam

We present SLIDE, a pipeline that enables transient discovery in data from the Vera C. Rubin Observatory’s Legacy Survey of Space and Time (LSST), using archival images from the Dark Energy Camera as templates for difference imaging. We apply this pipeline to the recently released Data Preview 1 (DP1; the first public release of Rubin commissioning data) and search for transients in the resulting difference images. The image subtraction, photometry extraction, and transient detection are all performed on the Rubin Science Platform. We demonstrate that SLIDE effectively extracts clean photometry by circumventing poor or missing LSST templates. We identified 29 previously unreported transients, 12 of which would not have been detected based on the DP1 DiaObject catalog. SLIDE will be especially useful for transient analysis in the early years of LSST, when template coverage will be largely incomplete or when templates may be contaminated by transients present at the time of acquisition. We present multiband light curves for a sample of known transients, along with new transient candidates identified through our search. Finally, we discuss the prospects of applying this pipeline during the main LSST survey. Our pipeline is broadly applicable and will support studies of all transients with slowly evolving phases.

Dong, Yize 一泽董 [Harvard-Smithsonian Center for Ast↗

Refining Principal Stress Measurements in Reservoir Underburden in Regions of Induced Seismicity through Seismological Tools, Laboratory Experiments - Final Technical Report

This project developed methodologies to measure the in-situ principal stress in the deep subsurface through use of multiple independent, but complementary, seismic methods, laboratory verification, and development of theoretical frameworks. By leveraging existing regional and local datasets we developed, tested, and refined a set of diagnostic tools for determining the in-situ stress state with reduced uncertainty at and below reservoir depths (1.5-6 km). A set of novel tools was produced that are scale independent, such that their utility is equivalent on regional, field scale, and near borehole monitoring of principal stresses in reservoir underburden for carbon storage projects. During a 4-year Department of Energy (DOE) and Southern Company funded project, carried out by the Electric Power Research Institute (EPRI), Lawrence Livermore National Laboratory (LLNL), the University of Oklahoma (OU), and the U.S. Geological Survey (USGS), the project team developed methodologies to measure the far-field in-situ principal stress in the deep subsurface, leveraging induced seismicity data from waste-water disposal projects. These methodologies consisted in the use of well-established and technically advanced seismic processing methods, such as virtual seismometer method-moment tensor (VSM-MT) and shear wave splitting (SWS), that are adept at recovering the stress orientation and certain components of the stress tensor. These methods were applied to robust seismicity catalogs created with matched filter techniques near sites of active fluid disposal—a proxy for carbon storage sites where such datasets are more limited. Estimates of the stress orientation made with seismic processing tools were considered along with laboratory acoustic emission experiments conducted on rock samples from the region of interest. Stress orientations in the studied region do not vary significantly across distances of ~100 km, nor are they found to rotate through time as a consequence of local wastewater disposal, as previously speculated. Finally, the project team investigated the trade-offs among the different seismic methods and evaluated the range of uncertainty that is generated with these methodologies, which led to a practical use and refinement of the VSM-MT technique when it is applied to field datasets. Understanding the trade-offs between these different methods highlighted the potential benefits of improved quantification of uncertainties on stress field estimations.

58 GEOSCIENCES↗

Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

A catalog of transcription factor (TF) binding sites in the genome is critical for deciphering regulatory relationships. Here, we present the culmination of the efforts of the modENCODE (model organism Encyclopedia of DNA Elements) and modERN (model organism Encyclopedia of Regulatory Networks) consortia to systematically assay TF binding events in vivo in two major model organisms,Drosophila melanogaster(fly) andCaenorhabditis elegans(worm). These data sets comprise 605 TFs identifying 3.6 M sites in the fly and 356 TFs identifying 0.9 M sites in the worm, and represent the majority of the regulatory space in each genome. We demonstrate that TFs associate with chromatin in clusters termed “metapeaks,” that larger metapeaks have characteristics of high-occupancy target (HOT) regions, and that the importance of consensus sequence motifs bound by TFs depends on metapeak size and complexity. Combining ChIP-seq data with single-cell RNA-seq data in a machine-learning model identifies TFs with a prominent role in promoting target gene expression in specific cell types, even differentiating between parent–daughter cells during embryogenesis. These data are a rich resource for the community that should fuel and guide future investigations into TF function. To facilitate data accessibility and utility, all strains expressing green fluorescent protein (GFP)-tagged TFs are available at the stock centers for each organism. The chromatin immunoprecipitation sequencing data are available through the ENCODE Data Coordinating Center, GEO, and through a direct interface that provides rapid access to processed data sets and summary analyses, as well as widgets to probe the cell-type-specific TF–target relationships.

Biochemistry & Molecular Biology↗

A Multiwavelength Search for Intrinsic Linear Polarization in Wolf–Rayet Winds

Wolf–Rayet stars have strong, hot winds, with mass-loss rates at least a factor of 10 greater than their O-star progenitors, although their terminal wind speeds are similar. In this paper, we use the technique of multiband linear polarimetry to extract information on the global asymmetry of the wind in a sample of 47 bright Galactic WR stars. Our observations also include time-dependent observations of 17 stars in the sample. The path to our goal includes removing the dominating component of wavelength-dependent interstellar polarization (ISP), which normally follows the well-known Serkowski law. We include a wavelength-dependent ISP position angle parameter in our ISP law and find that 15 stars show significant results for this parameter. We detect a significant component of wavelength-independent polarization due to electron scattering in the wind for 10 cases, with most WR stars showing none at the ∼0.05% level precision of our data. The intrinsically polarized stars can be explained with binary interaction, large-scale wind structure, and clumping. We also found that 5 stars out of 19 observed with the Strömgren b filter (probing the complex λ4600–4700 emission-line region) have significant residuals from the ISP law and propose that this is due to wind asymmetries. We provide a useful catalog of ISP for 47 bright Galactic WR stars and upper limits on the possible level of intrinsic polarization.

79 ASTRONOMY AND ASTROPHYSICS↗