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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 577 records · Page 32
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Post-composing ontology terms for efficient phenotyping in plant breeding

Abstract Ontologies are widely used in databases to standardize data, improving data quality, integration, and ease of comparison. Within ontologies tailored to diverse use cases, post-composing user-defined terms reconciles the demands for standardization on the one hand and flexibility on the other. In many instances of Breedbase, a digital ecosystem for plant breeding designed for genomic selection, the goal is to capture phenotypic data using highly curated and rigorous crop ontologies, while adapting to the specific requirements of plant breeders to record data quickly and efficiently. For example, post-composing enables users to tailor ontology terms to suit specific and granular use cases such as repeated measurements on different plant parts and special sample preparation techniques. To achieve this, we have implemented a post-composing tool based on orthogonal ontologies providing users with the ability to introduce additional levels of phenotyping granularity tailored to unique experimental designs. Post-composed terms are designed to be reused by all breeding programs within a Breedbase instance but are not exported to the crop reference ontologies. Breedbase users can post-compose terms across various categories, such as plant anatomy, treatments, temporal events, and breeding cycles, and, as a result, generate highly specific terms for more accurate phenotyping.

Mathematical & Computational Biology↗
DOE OSTI2020

UMLS users and uses: a current overview

Abstract The US National Library of Medicine regularly collects summary data on direct use of Unified Medical Language System (UMLS) resources. The summary data sources include UMLS user registration data, required annual reports submitted by registered users, and statistics on downloads and application programming interface calls. In 2019, the National Library of Medicine analyzed the summary data on 2018 UMLS use. The library also conducted a scoping review of the literature to provide additional intelligence about the research uses of UMLS as input to a planned 2020 review of UMLS production methods and priorities. 5043 direct users of UMLS data and tools downloaded 4402 copies of the UMLS resources and issued 66 130 951 UMLS application programming interface requests in 2018. The annual reports and the scoping review results agree that the primary UMLS uses are to process and interpret text and facilitate mapping or linking between terminologies. These uses align with the original stated purpose of the UMLS.

Amos, Liz↗
DOE OSTI2020

Potential pathogenicity determinants identified from structural proteomics of SARS-CoV and SARS-CoV-2

Despite SARS-CoV and SARS-CoV-2 being equipped with highly similar protein arsenals, the corresponding zoonoses have spread among humans at extremely different rates. The specific characteristics of these viruses that led to such distinct outcomes remain unclear. Here, we apply proteome-wide comparative structural analysis aiming to identify the unique molecular elements in the SARS-CoV-2 proteome that may explain the differing consequences. By combining protein modeling and molecular dynamics simulations, we suggest non-conservative substitutions in functional regions of the spike glycoprotein (S), nsp1, and nsp3 that are contributing to differences in virulence. Particularly, we explain why the substitutions at the receptor-binding domain of S affect the structure-dynamics behavior in complexes with putative host receptors. Conservation of functional protein regions within the two taxa is also noteworthy. We suggest that the highly conserved main protease, nsp5, of SARS-CoV and SARS-CoV-2 is part of their mechanism of circumventing the host interferon antiviral response. Overall, most substitutions occur on the protein surfaces and may be modulating their antigenic properties and interactions with other macromolecules. Our results imply that the striking difference in the pervasiveness of SARS-CoV-2 and SARS-CoV among humans seems to significantly derive from molecular features that modulate the efficiency of viral particles in entering the host cells and blocking the host immune response.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Rare ribosomal RNA sequences from archaea stabilize the bacterial ribosome

The ribosome serves as the universally conserved translator of the genetic code into proteins and supports life across diverse temperatures ranging from below freezing to above 120°C. Ribosomes are capable of functioning across this wide range of temperatures even though the catalytic site for peptide bond formation, the peptidyl transferase center, is nearly universally conserved. Here we find that Thermoproteota, a phylum of thermophilic Archaea, substitute cytidine for uridine at large subunit rRNA positions 2554 and 2555 (Escherichia coli numbering) in the A loop, immediately adjacent to the binding site for the 3'-end of A-site tRNA. We show by cryo-EM that E. coli ribosomes with uridine to cytidine mutations at these positions retain the proper fold and post-transcriptional modification of the A loop. Additionally, these mutations do not affect cellular growth, protect the large ribosomal subunit from thermal denaturation, and increase the mutational robustness of nucleotides in the peptidyl transferase center. This work identifies sequence variation across archaeal ribosomes in the peptidyl transferase center that likely confers stabilization of the ribosome at high temperatures and develops a stable mutant bacterial ribosome that can act as a scaffold for future ribosome engineering efforts.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Search for electroweak-scale dijet resonances using trigger-level analysis with the ATLAS detector in 132 fb −1 of 𝑝⁢𝑝 collisions at $\sqrt{𝑠}$ = 13 TeV

This article reports on a search for dijet resonances using 132 fb −1 of 𝑝⁢𝑝 collision data recorded at $\sqrt{𝑠}$ = 13 TeV by the ATLAS detector at the Large Hadron Collider. The search is performed solely on jets reconstructed within the ATLAS trigger to overcome bandwidth limitations imposed on conventional single-jet triggers, which would otherwise reject data from decays of sub-TeV dijet resonances. Collision events with two jets satisfying transverse momentum thresholds of 𝑝 T ≥ 85 GeV and jet rapidity separation of |𝑦*| <0.6 are analysed for dijet resonances with invariant masses from 375 to 1800 GeV. A data-driven background estimate is used to model the dijet mass distribution from multijet processes. No significant excess above the expected background is observed. Upper limits are set at 95% confidence level on coupling values for a benchmark leptophobic axial-vector 𝑍′ model and on the production cross section for a new resonance contributing a Gaussian-distributed line-shape to the dijet mass distribution.

hadron colliders↗
DOE OSTI2025

Observation of the decays 𝐵 + → Σ 𝑐 ⁢(2455) ++ $\bar{Ξ}^-_c$ and 𝐵 0 → Σ 𝑐 ⁢(2455) 0⁢ $\bar{Ξ}^0_𝑐$

We report the first observation of the two-body baryonic decays 𝐵 + → Σ 𝑐 ⁢(2455) ++ $\bar{Ξ}^-_c$ and 𝐵 0 → Σ 𝑐 ⁢(2455) 0⁢ $\bar{Ξ}^0_𝑐$ with significances of 7.3⁢𝜎 and 6.2⁢𝜎, respectively, including statistical and systematic uncertainties. The branching fractions are measured to be ℬ⁡(𝐵 + → Σ 𝑐 ⁢(2455) ++ $\bar{Ξ}^-_c$) = (5.74 ± 1.11 ± 0.4⁢2$^{+2.47}_{−1.53}$) ×10 −4 and ℬ⁡(𝐵 0 → Σ 𝑐 ⁢(2455) 0⁢ $\bar{Ξ}^0_𝑐$) = (4.83 ± 1.12 ± 0.3⁢7$^{+0.72}_{−0.60}$) ×10 −4 . The first and second uncertainties are statistical and systematic, respectively, while the third ones arise from the absolute branching fractions of $\bar{Ξ}^-_c$ or $\bar{Ξ}^0_𝑐$ decays. The data samples used for this analysis have integrated luminosities of 711 fb −1 and 365 fb −1 , and were collected at the ϒ⁡(4⁢𝑆) resonance by the Belle and Belle II detectors operating at the KEKB and SuperKEKB asymmetric-energy 𝑒 + ⁢𝑒 − colliders, respectively.

branching fraction↗
DOE OSTI2025

Weakly supervised anomaly detection for resonant new physics in the dijet final state using proton-proton collisions at $\sqrt{s}$ = 13 TeV with the ATLAS detector

An anomaly detection search for narrow-width resonances beyond the Standard Model that decay into a pair of jets is presented. The search is based on 139 fb −1 of proton-proton collisions at $\sqrt{s}$ = 13 TeV recorded during 2015–2018 with the ATLAS detector at the Large Hadron Collider. The analysis is optimized without a particular signal model and aims to be sensitive to a broad range of new physics. It uses two different machine learning strategies to estimate the background in different signal regions. In each region, a weakly supervised classifier is trained to distinguish this background model from data. The analysis focuses on events with high transverse momentum jets reconstructed as large-radius jets. The mass and substructure of these jets are used as inputs to the classifiers. After a classifier-based selection, the distribution of the invariant mass of the two jets is used to search for potential local excesses. The model-independent results of both the anomaly detection methods show no signs of significant local excesses. In addition to model-independent results, a representative set of signal models is injected into the data, and the sensitivity of the methods to these scenarios is reported.

Aad, G. [Aix-Marseille Université] (ORCID:00000002↗
DOE OSTI2025

Search for a Dark Higgs Boson Produced in Association with Inelastic Dark Matter at the Belle II Experiment

Inelastic dark matter models that have two dark matter particles and a massive dark photon can reproduce the observed relic dark matter density without violating cosmological limits. The mass splitting between the two dark matter particles 𝜒 1 and 𝜒 2 , with 𝑚⁡(𝜒 2 ) >𝑚⁡(𝜒 1 ), is induced by a dark Higgs field and a corresponding dark Higgs boson ℎ′. We present a search for dark matter in events with two vertices, at least one of which must be displaced from the interaction region, and missing energy. Using a 365 fb −1 data sample collected at Belle II, which operates at the SuperKEKB 𝑒 + ⁢𝑒 − collider, we observe no evidence for a signal. We set upper limits on the product of the production cross section 𝜎⁡(𝑒 + ⁢𝑒 − → ℎ′⁡𝜒 1 ⁢𝜒 2 ), and the product of branching fractions ℬ⁡(𝜒 2 → 𝜒 1⁢ 𝑒 + ⁢𝑒 − ) ×ℬ⁡(ℎ′ → 𝑥 + ⁢𝑥 − ), where 𝑥 + ⁢𝑥 − indicates 𝜇 + ⁢𝜇 − , 𝜋 + ⁢𝜋 − , or 𝐾 + ⁢𝐾 − , as functions of ℎ′ mass and lifetime at the level of 10 −1 fb. We set model-dependent upper limits on the dark Higgs mixing angle at the level of 10 −5 and on the dark photon kinetic mixing parameter at the level of 10 −3 . This is the first search for dark Higgs bosons in association with inelastic dark matter.

dark matter↗
DOE OSTI2025

Measurement of the 𝐶⁢𝑃 asymmetry in 𝐷 + → 𝜋 + ⁢𝜋 0 decays at Belle II

We measure the 𝐶⁢𝑃 asymmetry in 𝐷 + → 𝜋 + ⁢𝜋 0 decays reconstructed in 𝑒 + ⁢𝑒 − collisions at the Belle II experiment using a dataset corresponding to an integrated luminosity of 428 fb −1 . A control sample of 𝐷 + → 𝜋 + ⁢𝐾$^0_𝑆$ decays is used to correct for detection and production asymmetries. The result 𝐴 𝐶⁢𝑃 ⁡(𝐷 + → 𝜋 + ⁢𝜋 0 ) = (−1.8 ± 0.9 ± 0.1)%, where the first uncertainty is statistical and the second systematic, is the most precise determination to date. It agrees with the prediction of 𝐶⁢𝑃 symmetry from the standard model and with results of previous measurements.

CP violation↗
DOE OSTI2025

Search for new physics in final states with semivisible jets or anomalous signatures using the ATLAS detector

A search is presented for hadronic signatures of beyond the Standard Model (BSM) physics, with an emphasis on signatures of a strongly coupled hidden dark sector accessed via resonant production of a 𝑍′ mediator. The ATLAS experiment dataset collected at the Large Hadron Collider from 2015 to 2018 is used, consisting of proton-proton collisions at $\sqrt{𝑠}$ = 13 TeV and corresponding to an integrated luminosity of 140 fb −1 . The 𝑍′ mediator is considered to decay to two dark quarks, which each hadronize and decay to showers containing both dark and Standard Model particles, producing a topology of interacting and noninteracting particles within a jet known as “semivisible.” Machine learning methods are used to select these dark showers and reject the dominant background of mismeasured multijet events, including an anomaly detection approach to preserve broad sensitivity to a variety of BSM topologies. A resonance search is performed by fitting the transverse mass spectrum based on a functional form background estimation. No significant excess over the expected background is observed. Results are presented as limits on the production cross section of semivisible jet signals, parametrized by the fraction of invisible particles in the decay and the 𝑍′ mass, and by quantifying the significance of any generic Gaussian-shaped mass peak in the anomaly region.

particle dark matter↗
DOE OSTI2025

Search for cascade decays of charged sleptons and sneutrinos in final states with three leptons and missing transverse momentum in 𝑝⁢𝑝 collisions at $\sqrt{𝑠} = 13$ TeV with the ATLAS detector

A search for cascade decays of charged sleptons and sneutrinos using final states characterized by three leptons (electrons or muons) and missing transverse momentum is presented. The analysis is based on a dataset with 140 fb −1 of proton-proton (pp) collisions at a center-of-mass energy of $\sqrt{𝑠} = 13$ TeV recorded by the ATLAS detector at the Large Hadron Collider. This paper focuses on a supersymmetric scenario that is motivated by the muon anomalous magnetic moment observation, dark-mattter relic density abundance, and electroweak naturalness. A mass spectrum involving light Higgsinos and heavier sleptons with a bino at intermediate mass is targeted. No significant deviation from the Standard Model expectation is observed. This search enables us to place stringent constraints on this model, excluding at the 95% confidence level charged slepton and sneutrino masses up to 450 GeV when assuming a lightest neutralino mass of 100 GeV and mass-degenerate selectrons, smuons and sneutrinos.

extensions of Higgs sector↗
DOE OSTI2025

Charged-hadron and identified-hadron (𝐾$^{0}_{𝑆}$, Λ, $Ξ$ − ) yield measurements in photonuclear Pb + Pb and 𝑝 + Pb collisions at $\sqrt{s_{NN}}$ = 5.02 TeV with ATLAS

This paper presents the measurement of charged-hadron and identified-hadron (𝐾$^{0}_{𝑆}$, Λ, $Ξ$ − ) yields in photonuclear collisions using 1.7nb −1 of $\sqrt{s_{NN}}$ = 5.02 TeV Pb + Pb data collected in 2018 with the ATLAS detector at the Large Hadron Collider. Candidate photonuclear events are selected using a combination of tracking and calorimeter information, including the zero-degree calorimeter. The yields as a function of transverse momentum and rapidity are measured in these photonuclear collisions as a function of charged-particle multiplicity. These photonuclear results are compared with 0.1 nb −1 of $\sqrt{s_{NN}}$ = 5.02 TeV p + Pb data collected in 2016 by ATLAS using similar charged-particle multiplicity selections. These photonuclear measurements shed light on potential quark-gluon plasma formation in photonuclear collisions via observables sensitive to radial flow, enhanced baryon-to-meson ratios, and strangeness enhancement. The results are also compared with the Monte Carlo generator and hydrodynamic calculations to test whether such photonuclear collisions may produce small droplets of quark-gluon plasma that flow collectively.

H & He induced nuclear reactions↗
DOE OSTI2025

Measurement of the time-integrated 𝐶⁢𝑃 asymmetry in 𝐷 0 → 𝐾$^{0}_{S}$𝐾$^{0}_{S}$ decays using opposite-side flavor tagging at Belle and Belle II

We measure the time-integrated 𝐶⁢𝑃 asymmetry in 𝐷 0 → 𝐾$^{0}_{S}$𝐾$^{0}_{S}$ decays reconstructed in 𝑒 + ⁢𝑒 − → $c\bar{c}$ events collected by the Belle and Belle II experiments. The corresponding data samples have integrated luminosities of 980 and 428 fb −1 , respectively. To infer the flavor of the 𝐷 0 meson, we exploit the correlation between the flavor of the reconstructed decay and the electric charges of particles reconstructed in the rest of the 𝑒 + ⁢𝑒 − → $c\bar{c}$ event. This results in a sample which is independent from any other previously used at Belle or Belle II. The result, 𝐴 𝐶⁢𝑃 ⁡(𝐷 0 → 𝐾$^{0}_{S}$𝐾$^{0}_{S}$)=(1.3±2.0±0.2)%, where the first uncertainty is statistical and the second systematic, is consistent with previous determinations and with 𝐶⁢𝑃 symmetry.

CP violation↗
DOE OSTI2025

Evidence for Longitudinally Polarized 𝑊 Bosons in the Electroweak Production of Same-Sign 𝑊 Boson Pairs in Association with Two Jets in 𝑝⁢𝑝 Collisions at $\sqrt{𝑠}$ = 13 TeV with the ATLAS Detector

This Letter reports the first evidence of electroweak production of same-sign 𝑊 boson pairs where at least one of the 𝑊 bosons is longitudinally polarized and the most stringent constraint to date for the production of two longitudinally polarized same-sign 𝑊 bosons. The dataset used corresponds to an integrated luminosity of 140 fb −1 of proton-proton collisions at a center-of-mass energy of 13 TeV, collected with the ATLAS detector during run 2 of the Large Hadron Collider. The study is performed in final states including two same-sign leptons (electrons or muons), missing transverse momentum, and at least two jets with a large invariant mass and a large rapidity difference. Two independent fits are performed targeting the production of same-sign 𝑊 bosons with at least one, or two longitudinally polarized 𝑊 bosons. The observed (expected) significance of the production with at least one longitudinally polarized 𝑊 boson is 3.3 (4.0) standard deviations. An observed (expected) 95% confidence level upper limit of 0.45 (0.70) fb is reported on the fiducial production cross section of two longitudinally polarized same-sign 𝑊 bosons.

W & Z bosons↗
DOE OSTI2025

Search for events with one displaced vertex from long-lived neutral particles decaying into hadronic jets in the ATLAS muon spectrometer in 𝑝⁢𝑝 collisions at $\sqrt{𝑠}$ = 13 TeV

A search for events with one displaced vertex from long-lived particles using data collected by the ATLAS detector at the Large Hadron Collider is presented, using 140 fb −1 of proton-proton collision data at $\sqrt{𝑠}$ =13 TeV recorded in 2015–2018. The search employs techniques for reconstructing vertices of long-lived particles decaying into hadronic jets in the muon spectrometer displaced between 3 m and 14 m from the primary interaction vertex. The observed number of events is consistent with the expected background and limits for several benchmark signals are determined. A scalar-portal model and a Higgs-boson-portal baryogenesis model are considered. A dedicated analysis channel is employed to target Z-boson associated long-lived particle production, including an axionlike particle and a dark photon model. For the Higgs boson model, branching fractions above 1% are excluded at 95% confidence level for long-lived particle proper decay lengths ranging from 5 cm to 40 m. For the photophobic axionlike particle model considered, this search produces the strongest limits to date for proper decay lengths greater than 𝒪⁡(10) cm.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2025

Azimuthal anisotropies of charged particles with high transverse momentum in Pb + Pb collisions at $\sqrt{s_{\textrm{NN}}}$ = 5.02 TeV with the ATLAS detector

A measurement is presented of elliptic (𝑣 2 ) and triangular (𝑣 3 ) azimuthal anisotropy coefficients for charged particles produced in Pb + Pb collisions at $\sqrt{s_{\textrm{NN}}}$ = 5.02 TeV using a dataset corresponding to an integrated luminosity of 0.44nb −1 collected with the ATLAS detector at the LHC in 2018. The values of 𝑣 2 and 𝑣 3 are measured for charged particles over a wide range of transverse momentum (𝑝 T ), 1–400 GeV, and Pb + Pb collision centrality, 0–60%, using the scalar-product and multiparticle cumulant methods. These methods are sensitive to event-by-event fluctuations and nonflow effects in the measurements of azimuthal anisotropies. Positive values of 𝑣 2 are observed up to a 𝑝 T of approximately 100 GeV from both methods across all centrality intervals. Positive values of 𝑣 3 are observed up to approximately 25 GeV using both methods, though the application of the three-subevent technique to the multiparticle cumulant method leads to significant changes at the highest 𝑝 T . At high 𝑝 T (𝑝 T ⪆ 10 GeV), charged particles are dominantly from jet fragmentation. These jets, and hence the measurements presented here, are sensitive to the path-length dependence of parton energy loss in the quark-gluon plasma produced in Pb + Pb collisions.

Collective flow↗
DOE OSTI2025

Test of lepton flavor universality with measurements of 𝑅⁡(𝐷 + ) and 𝑅⁡(𝐷* + ) using semileptonic 𝐵 tagging at the Belle II experiment

We report measurements of the ratios of branching fractions ℛ⁡(𝐷 (*)+ ) = ℬ⁡($\bar{𝐵}$ 0 → 𝐷 (*)+ ⁢𝜏 −⁢ $\bar{𝜈}$ 𝜏 )/ℬ⁡($\bar{𝐵}$ 0 → 𝐷 (*)+ ⁢ℓ − $\bar{𝜈}$ ℓ ), where ℓ denotes either an electron or a muon. These ratios test the universality of the charged-current weak interaction. The results are based on a 365 fb −1 data sample collected with the Belle II detector at the SuperKEKB 𝑒 + ⁢𝑒 − collider, which operates at a center-of-mass energy corresponding to the ϒ⁡(4⁢𝑆) resonance, just above the threshold for $𝐵\bar{𝐵}$ production. Signal candidates are reconstructed by selecting events in which the companion 𝐵 meson from the ϒ⁡(4⁢𝑆) → $𝐵\bar{𝐵}$ decay is identified in semileptonic modes. The 𝜏 lepton is reconstructed via its leptonic decays. We obtain ℛ⁡(𝐷 + ) = 0.418$^{+0.075}_{−0.073}$⁢(stat)$^{+0.049}_{−0.056}$⁢(syst) and ℛ⁡(𝐷 *+ ) = 0.306$^{+0.035}_{−0.033}$⁢(stat)$^{+0.016}_{−0.018⁢}$(syst), which are consistent with world average values. Accounting for the correlation between them, these values differ from the Standard Model expectation by a collective significance of 1.7 standard deviations.

bottom quark↗
DOE OSTI2025

Evidence for the Dimuon Decay of the Higgs Boson in 𝑝⁢𝑝 Collisions with the ATLAS Detector

A search for the dimuon decay of the Higgs boson is presented based on 𝑝⁢𝑝 collision data recorded by ATLAS during Run 3 of the Large Hadron Collider, corresponding to an integrated luminosity of 165 fb −1 at $\sqrt{s}$ = 13.6 TeV. To enhance the sensitivity, the results are combined with those from Run 2. An excess of events over the background is observed with a significance of 3.4⁢𝜎 (2.5⁢𝜎 expected). The best-fit signal strength is 𝜇 = 1.4 ± 0.4. This result provides evidence for the 𝐻 → 𝜇⁢𝜇 decay with ATLAS data and offers a direct probe of the Higgs-boson Yukawa coupling to second-generation fermions.

Hadron colliders↗