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At least 559 records · Page 31

Evaluation of the Lawrence Livermore Microbal Detection Array at the Statens Serum Institut CRADA No. TC02189

This was a collaborative effort between Lawrence Livermore National Security, LLC as manager and operator of Lawrence Livermore National Laboratory (LLNL) and Statens Serum Institut to evaluate and transition the Lawrence Livermore Microarray Detection Array (LLMDA) analysis software package, the Composite Likelihood Maximization method (CLiMax) to the SSI. The SSI is a public enterprise under the Danish Ministry of Health that operates a microbiology reference laboratory for the Danish population and analyzes tens to thousands of human clinical samples annually. SSI has been collaborating with the LLNL team for several years to use the LLMDA to analyze viral and bacterial infections from human clinical samples. The collaboration has resulted in two joint publications thus far, describing improvements to LLMDA sample preparation, and the utility of the LLMDA for detecting emerging viruses in clinical samples. Under our previous collaboration, SSI has performed LLMDA experiments at their facility and then transferred the raw LLMDA data to LLNL for analysis. SSI had purchased LLMDA microarrays directly from the manufacturer, Roche NimbleGen. The main purpose of the current collaboration was to adapt the CLiMax analysis software so that it could run on a computer located at SSI. Additional effort was budgeted for LLNL staff to assist SSI with the transition and the operation of the software. The primary deliverable is the CLiMax software, installed on a computer at SSI.

59 BASIC BIOLOGICAL SCIENCES↗

Evaluation of the Lawrence Livermore Microbal Detection Array at the Statens Serum Institut

This was a collaborative effort between Lawrence Livermore National Security, LLC as manager and operator of Lawrence Livermore National Laboratory (LLNL) and Statens Serum Institut to evaluate and transition the Lawrence Livermore Microarray Detection Array (LLMDA) analysis software package, the Composite Likelihood Maximization method (CLiMax) to the SSI. The SSI is a public enterprise under the Danish Ministry of Health that operates a microbiology reference laboratory for the Danish population and analyzes tens to thousands of human clinical samples annually. SSI has been collaborating with the LLNL team for several years to use the LLMDA to analyze viral and bacterial infections from human clinical samples. The collaboration has resulted in two joint publications thus far, describing improvements to LLMDA sample preparation, and the utility of the LLMDA for detecting emerging viruses in clinical samples.

59 BASIC BIOLOGICAL SCIENCES↗

IER 500: AWE-LLNL Measurement Campaign at DAF [Slides]

Presentation Hosted at Device Assembly Facility (DAF). Joint collaboration by Atomic Weapons Establishment (AWE) and Lawrence Livermore National Laboratory (LLNL). Multiple measurements were recorded through a two-week period with 12 unique objects measured. LLNL deployed Machine learning software program for diagnostic assessments. Current status notes the dedicated DAF team LLNL maintains. Additionally, LLNL is compiling a report on the AWE-LLNL measurements and designing security benchmark experiments. The presentation concludes with future work envisioned.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Hardware-Based Randomized Encoding for Sensor Authentication in Power Grid SCADA Systems

Supervisory Control and Data Acquisition (SCADA) systems are utilized extensively in critical power grid infrastructures. Modern SCADA systems have been proven to be susceptible to cyber-security attacks and require improved security primitives in order to prevent unwanted influence from an adversarial party. One section of weakness in the SCADA system is the integrity of field level sensors providing essential data for control decisions at a master station. In this paper we propose a lightweight hardware scheme providing inferred authentication for SCADA sensors by combining an analog to digital converter and a permutation generator as a single integrated circuit. Through this method we encode critical sensor data at the time of sensing, so that unencoded data is never stored in memory, increasing the difficulty of software attacks. We show through experimentation how our design stops both software and hardware false data injection attacks occurring at the field level of SCADA systems.

42 ENGINEERING↗

Is the Supporting Information the Venue for Reproducibility and Transparency?

Making research data, software, and data processing tools readily available to the public could significantly enhance the impact of scientific publications. Openness and transparency could address reproducibility concerns and accelerate scientific progress.(1, 2) While archives and repositories would be preferable for securing data in the long term, the Supporting Information (SI) already allocates significant space to provide auxiliary files, links, and essential information needed to make scientific findings immediately reproducible as well as data processing protocols and numerical procedures executable. Furthermore, the SI document could ensure that data that might not fit in the tight confines of a journal article lives online even when laboratories move on to other projects, close, and lose track of their data. The change for openness and transparency might be difficult to embrace, depending on the specific nature of the project. Nevertheless, the trend to make raw research data and open-source software packages available to the public has been building steady momentum. Openness in research data and software sharing is already making transformative contributions to the communication of research findings, critical for ensuring reproducibility as well as training of the next generation of scientists.

Rudshteyn, Benjamin↗

Is the Supporting Information the Venue for Reproducibility and Transparency?

Making research data, software, and data processing tools readily available to the public could significantly enhance the impact of scientific publications. Openness and transparency could address reproducibility concerns and accelerate scientific progress.(1, 2) While archives and repositories would be preferable for securing data in the long term, the Supporting Information (SI) already allocates significant space to provide auxiliary files, links, and essential information needed to make scientific findings immediately reproducible as well as data processing protocols and numerical procedures executable. Furthermore, the SI document could ensure that data that might not fit in the tight confines of a journal article lives online even when laboratories move on to other projects, close, and lose track of their data. The change for openness and transparency might be difficult to embrace, depending on the specific nature of the project. Nevertheless, the trend to make raw research data and open-source software packages available to the public has been building steady momentum. Openness in research data and software sharing is already making transformative contributions to the communication of research findings, critical for ensuring reproducibility as well as training of the next generation of scientists.

Rudshteyn, Benjamin↗

Next generation experimental data access at NSLS-II

The NSLS-II network and computing infrastructure has been significantly updated recently. The re-IP process in 2020-2021 enabled the NSLS-II network to be routable to the rest of the BNL campus. Then, standardization of the operating systems and deployment procedures helped to deliver a consistent environment to workstations and servers used by all NSLS-II beamlines. In particular, the RedHat Enterprise Linux 8 was deployed to 700+ machines using the RedHat Satellite infrastructure management product, and all critical services (IOCs, databases, etc.) were migrated to the new OS. NFS users’ home directories are consistent across all of the machines, which eliminates the need for the individual configuration of the user environment on each host. The standard suite of software packages is available to the beamline staff and users, which includes the system packages (deployed via RPM) as well as the conda environments for data acquisition and analysis. Security measures were implemented to comply with the industry standards, which include multi-factor authentication (using Duo), secure screen lock for the beamline machines, and advanced access control to the experimental data that is stored in shared central storage available on all hosts. These major enhancements facilitated sharing the experimental data (currently for a number of selected beamlines, with a plan to extend it to the whole facility in the nearest future) with the users via an externally facing JupyterHub instance. The beamlines keep using the Bluesky data acquisition framework to orchestrate their experiments, and the new infrastructure enabled them to use a next-generation data access library called tiled.

36 MATERIALS SCIENCE↗

Oak Ridge Spoofing and Interference Test Battery (OAKBAT) - Pure Tones

This dataset contains the pure 1.57542 GHz (L1) pure tone recordings provided to allow characterization of the recording equipment used to digitize the OAKBAT scenarios. The equipment includes the cable, two LNAs, and the software-defined radio. The files are binary data in the format described in the paper: Albright, A., Powers, S. Bonior, J., and Combs, F., A Tool for Furthering GNSS Security Research: The Oak Ridge Spoofing and Interference Test Battery (OAKBAT), in Proceedings of ION GNSS+ 2020, 2020. The metadata, equipment documentation and configuration files, collection procedures and more materials that allow the independent reproduction of the OAKBAT data are https://github.com/oakbat/. Additionally, this site includes a complete listing of all the RF data files, not just this series, available as part of OAKBAT.

42 ENGINEERING↗

2018 FEARCE Development: A Robust and Accurate Engine Modeling Software

Research and development of Fast, Easy, Accurate and Robust Continuum Engineering (FEARCE, formerly KIVA-hpFE) for turbulent reactive and multiphase flow, particularly as related to engine modeling, is relevant to the DOE Vehicle Technologies Office efforts at addressing national energy security. Less dependence on petroleum products leads to greater energy security. By Environmental Protection Agency standards, some vehicles are now reaching 42–50 mpg mark. These are conventional gasoline engines. With continued investment and research into new technical innovations, the potential exists to save more than 4 million barrels of oil per day or approximately 200 to 400 dollars million per day. This would be a significant decrease in emissions and use of petroleum and a very large stimulus to the U.S. economy.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Process Optimization and Modeling for Minerals Sustainability (PrOMMiS) v1.0.0

The U.S. Department of Energy's ("DOE") Process Optimization and Modeling for Minerals Sustainability project ("PrOMMiS Project") was initiated in 2023 to transform the national Critical Minerals and Rare Earth Elements (CM & REE) landscape, thereby supporting DOE's three enduring strategic objectives: security, economic competitiveness, and environmental responsibility. To address this initiative, the PrOMMiS Project will develop, demonstrate, and deploy an open-source, advanced system modeling, optimization, and analysis application ("PrOMMiS Software Application") that will support industry decision-makers by accelerating the scale-up of novel CM & REE technologies by de-risking the development and deployment of commercial scale processes and maximizing learning throughout the development cycle.

Beattie, KeithS [Lawrence Berkeley National Labora↗

Nuclear Computational Resource Center Progress and Status Report

The Nuclear Computational Resource Center (NCRC) at Idaho National Laboratory (INL), supported by the United States Department of Energy Office of Nuclear Energy (DOE-NE), provides access to supercomputer systems and protected software in support of nuclear energy research and development. The NCRC vision recognizes the central role modeling and simulation plays in nuclear energy innovation as well as ensuring the safe, secure, and efficient operations of existing nuclear energy systems. To accomplish this vision, the NCRC supports processes and systems which provide access to computational tools, supercomputing systems, and training in support of nuclear energy innovation.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

A Space Based Internet Protocol System for Sub-Orbital Tracking and Control

Personnel from the Goddard Space Flight Center Wallops Flight Facility (GSFC/WFF) in Virginia are responsible for the overall management of the NASA Sounding Rocket Program. Payloads are generally in support of NASA's Space Science Enterprise's missions and return a variety of scientific data as well as providing a reasonably economical means of conducting engineering tests for instruments and devices used on satellites and other spacecraft. The fifteen types of sounding rockets used by NASA can carry payloads of various weights to altitudes from 50 km to more than 1,300 km. Launch activities are conducted not only from established missile ranges, but also from remote locations worldwide requiring mobile tracking and command equipment to be transported and set up at considerable expense. The advent of low earth orbit (LEO) commercial communications satellites provides an opportunity to dramatically reduce tracking and control costs of launch vehicles and Unpiloted Aerial Vehicles (UAVs) by reducing or eliminating this ground infrastructure. Additionally, since data transmission is by packetized Internet Protocol (IP), data can be received and commands initiated from practically any location. A low cost Commercial Off The Shelf (COTS) system is currently under development for sounding rockets which also has application to UAVs and scientific balloons. Due to relatively low data rate (9600 baud) currently available, the system will first be used to provide GPS data for tracking and vehicle recovery. Range safety requirements for launch vehicles usually stipulate at least two independent tracking sources. Most sounding rockets flown by NASA now carry GPS receivers that output position data via the payload telemetry system to the ground station. The Flight Modem can be configured as a completely separate link thereby eliminating requirement for tracking radar. The system architecture which integrates antennas, GPS receiver, commercial satellite packet data modem, and a single board computer with custom software is described along with the technical challenges and the plan for their resolution. These include antenna development, high Doppler rates, reliability, environmental ruggedness, hand over between satellites and data security. An aggressive test plan is included which in addition to environmental testing measures bit error rate, latency and antenna patterns. Actual flight tests are planned for the near future on aircraft, long duration balloons and sounding rockets and these results as well as the current status of the project are reported.

Bull, Barton↗

A Space Based Internet Protocol System for Launch Vehicle Tracking and Control

Personnel from the Goddard Space Flight Center Wallops Flight Facility (GSFC/WFF) in Virginia are responsible for the overall management of the NASA Sounding Rocket and Scientific Balloon Programs. Payloads are generally in support of NASA's Space Science Enterprise's missions and return a variety of scientific data as well as providing a reasonably economical means of conducting engineering tests for instruments and devices used on satellites and other spacecraft. Sounding rockets used by NASA can carry payloads of various weights to altitudes from 50 km to more than 1,300 km. Scientific balloons can carry a payload weighing as much as 3,630 Kg to an altitude of 42 km. Launch activities for both are conducted not only from established ranges, but also from remote locations worldwide requiring mobile tracking and command equipment to be transported and set up at considerable expense. The advent of low earth orbit (LEO) commercial communications satellites provides an opportunity to dramatically reduce tracking and control costs of these launch vehicles and Unpiloted Aerial Vehicles (UAVs) by reducing or eliminating this ground infrastructure. Additionally, since data transmission is by packetized Internet Protocol (IP), data can be received and commands initiated from practically any location. A low cost Commercial Off The Shelf (COTS) system is currently under development for sounding rockets that also has application to UAVs and scientific balloons. Due to relatively low data rate (9600 baud) currently available, the system will first be used to provide GPS data for tracking and vehicle recovery. Range safety requirements for launch vehicles usually stipulate at least two independent tracking sources. Most sounding rockets flown by NASA now carry GP~ receivers that output position data via the payload telemetry system to the ground station. The Flight Modem can be configured as a completely separate link thereby eliminating the requirement for tracking radar. The system architecture that integrates antennas, GPS receiver, commercial satellite packet data modem, and a single board computer with custom software is described along with the technical challenges and the plan for their resolution. These include antenna development, high Doppler rates, reliability, environmental ruggedness, hand over between satellites, and data security. An aggressive test plan is included which, in addition to environmental testing, measures bit error rate, latency and antenna patterns. Actual launches on a sounding rocket and various aircraft flights have taken place. Flight tests are planned for the near future on aircraft, long duration balloons and sounding rockets. These results, as well as the current status of the project, are reported.

Bull, Barton↗

Controlling Infrastructure Costs: Right-Sizing the Mission Control Facility

Johnson Space Center's Mission Control Center is a space vehicle, space program agnostic facility. The current operational design is essentially identical to the original facility architecture that was developed and deployed in the mid-90's. In an effort to streamline the support costs of the mission critical facility, the Mission Operations Division (MOD) of Johnson Space Center (JSC) has sponsored an exploratory project to evaluate and inject current state-of-the-practice Information Technology (IT) tools, processes and technology into legacy operations. The general push in the IT industry has been trending towards a data-centric computer infrastructure for the past several years. Organizations facing challenges with facility operations costs are turning to creative solutions combining hardware consolidation, virtualization and remote access to meet and exceed performance, security, and availability requirements. The Operations Technology Facility (OTF) organization at the Johnson Space Center has been chartered to build and evaluate a parallel Mission Control infrastructure, replacing the existing, thick-client distributed computing model and network architecture with a data center model utilizing virtualization to provide the MCC Infrastructure as a Service. The OTF will design a replacement architecture for the Mission Control Facility, leveraging hardware consolidation through the use of blade servers, increasing utilization rates for compute platforms through virtualization while expanding connectivity options through the deployment of secure remote access. The architecture demonstrates the maturity of the technologies generally available in industry today and the ability to successfully abstract the tightly coupled relationship between thick-client software and legacy hardware into a hardware agnostic "Infrastructure as a Service" capability that can scale to meet future requirements of new space programs and spacecraft. This paper discusses the benefits and difficulties that a migration to cloud-based computing philosophies has uncovered when compared to the legacy Mission Control Center architecture. The team consists of system and software engineers with extensive experience with the MCC infrastructure and software currently used to support the International Space Station (ISS) and Space Shuttle program (SSP).

Martin, Keith↗

Understanding and Verifying Neural Networks

Deep Neural Networks (DNNs) have gained immense popularity in recent times and have widespread use in applications such as image classification, sentiment analysis, speech recognition and also in safety-critical applications such as autonomous driving. However, they suffer limitations such as lack of explainability and robustness which raise safety and security concerns in their usage. Further, the complex structure and large input spaces of DNNs act as an impediment to thorough verification and testing. The SafeDNN project at the Robust Software Engineering (RSE) group at NASA aims at exploring techniques to ensure that systems that use deep neural networks are safe, robust and interpretable. In this talk, I will be presenting our technique Prophecy that automatically infers formal properties of deep neural network models. The tool extracts patterns based on neuron activations as preconditions that imply certain desirable output properties of the model. I would be highlighting case studies that use Prophecy in obtaining explanations for network decisions, understanding correct and incorrect behavior, providing formal guarantees wrt safety and robustness, and debugging neural network models. We have applied the tool on image classification networks, neural network controllers providing turn advisories in unmanned aircrafts, regression models used for autonomous center-line tracking in aircrafts and neural network object detectors

Deep Neural Networks↗

A Central Asia Hydrologic Monitoring Dataset for Food and Water Security Applications in Afghanistan

From the Hindu Kush mountains to the Registan Desert, Afghanistan is a diverse landscape where droughts, floods, conflict, and economic market accessibility pose challenges for agricultural livelihoods and food security. The ability to remotely monitor environmental conditions is critical to support decision making for humanitarian assistance. The Famine Early Warning Systems Network (FEWS NET) Land Data Assimilation System (FLDAS) global and Central Asia data streams provide information on hydrologic states for routine integrated food security analysis. While developed for a specific project, these data are publicly available and useful for other applications that require hydrologic estimates of the water and energy balance. These two data streams are unique because of their suitability for routine monitoring, as well as for being a historical record for computing relative indicators of water availability. The global stream is available at ∼ 1-month latency, and monthly average outputs are on a 10 km grid from 1982–present. The second data stream, Central Asia (21–56°N, 30–100°E), at ∼ 1 d latency, provides daily average outputs on a 1 km grid from 2000–present. This paper describes the configuration of the two FLDAS data streams, background on the software modeling framework, selected meteorological inputs and parameters, and results from previous evaluation studies. We also provide additional analysis of precipitation and snow cover over Afghanistan. We conclude with an example of how these data are used in integrated food security analysis. For use in new and innovative studies that will improve understanding of this region, these data are hosted by U.S. Geological Survey data portals and the National Aeronautics and Space Administration (NASA). The Central Asia data described in this paper can be accessed via the NASA repository at https://doi.org/10.5067/VQ4CD3Y9YC0R (Jacob and Slinski, 2021), and the global data described in this paper can be accessed via the NASA repository at https://doi.org/10.5067/5NHC22T9375G (McNally, 2018).

Amy McNally↗

Porting a fast-running wildfire plume model for use in national security and climate applications

In this project, the code for the fast-running Freitas wildfire plume model was successfully ported into the NARAC system, creating an operations-ready capability for predicting the transport of hazardous smoke from large wildfires. “Porting” refers to copying a section of code from one software package to another while accounting for unique dependencies in each software package. In this case, the code was ported from the Weather Research and Forecasting (WRF) Model, which is used extensively by the project team. To verify correct implementation, model results from the updated NARAC system were compared to those from WRF and the High-Resolution Rapid Refresh (HRRR) forecast model, which also employs the Freitas scheme. The NARAC User Interface (UI) and code documentation were also updated to include the new wildfire plume option, and a wildfire case was added to the NARAC test suite. The code was used in a real-time, semi-operational setup to predict smoke transport during the Cerro Pelado fire near Los Alamos National Laboratory in May 2022. The Freitas plume model was also tested for LLNL climate applications. Although the code was not ported into the Energy Exascale Earth System Model (E3SM), it was tested offline using E3SM atmospheric inputs, and results were compared to existing high-resolution plume predictions from large-eddy simulations in WRF. The code implementation and testing completed during this project will enable future work predicting smoke transport from large wildfires in LLNL national security and climate mission spaces.

54 ENVIRONMENTAL SCIENCES↗