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NASA NTRS1984

Parallel, iterative solution of sparse linear systems: Models and architectures

A model of a general class of asynchronous, iterative solution methods for linear systems is developed. In the model, the system is solved by creating several cooperating tasks that each compute a portion of the solution vector. A data transfer model predicting both the probability that data must be transferred between two tasks and the amount of data to be transferred is presented. This model is used to derive an execution time model for predicting parallel execution time and an optimal number of tasks given the dimension and sparsity of the coefficient matrix and the costs of computation, synchronization, and communication. The suitability of different parallel architectures for solving randomly sparse linear systems is discussed. Based on the complexity of task scheduling, one parallel architecture, based on a broadcast bus, is presented and analyzed.

Reed, D. A.↗

NASA NTRS1985

Parallel, iterative solution of sparse linear systems - Models and architectures

Solving large, sparse, linear systems of equations is a fundamental problem in large scale scientific and engineering computation. A model of a general class of asynchronous, iterative solution methods for linear systems is developed. In the model, the system is solved by creating several cooperating tasks that each compute a portion of the solution vector. A data transfer model predicting both the probability that data must be transferred between two tasks and the amount of data to be transferred is presented. This model is used to derive an execution time model for predicting parallel execution time and an optimal number of tasks given the dimension and sparsity of the coefficient matrix and the costs of computation, synchronization, and communication. The suitability of different parallel architectures for solving randomly sparse linear systems is discussed. Based on the complexity of task scheduling, one parallel architecture, based on a broadcast bus, is presented and analyzed.

Reed, D. A.↗

NASA NTRS1987

Relaxation algorithms for the Euler equations

The alternating direction implicit central-difference scheme algorithms may be replaced by successive-line-relaxation (SLR) procedures that are stable in three dimensions. Several Beamand Warming-type codes are presently modified on the basis of SLR solution procedures in order to compute the flows over a cylinder, a NACA-0012 airfoil, and a shock wave reflecting off a plate. Since the codes are written in a 'delta form', the implementation of relaxation procedures that rely only on the corrections is relatively easy; the steady state residual computation and any artificial viscosity terms may be left unchanged.

Wornom, S. F.↗

NASA NTRS1998

The Effect of Solution Conditions on the Nucleation Kinetics of Tetragonal Lysozyme Crystals

An understanding of protein crystal nucleation rates and the effect of solution conditions upon them, is fundamental to the preparation of protein crystals of the desired size and shape for X-ray diffraction analysis. The ability to predict the effect of supersaturation, temperature, pH and precipitant concentration on the number and size of crystals formed is of great benefit in the pursuit of protein structure analysis. In this study we experimentally examine the effect of supersaturation, temperature, pH and sodium chloride concentration on the nucleation rate of tetragonal chicken egg white lysozyme crystals. In order to do this batch crystallization plates were prepared at given solution concentrations and incubated at three different temperatures over the period of one week. The number of crystals per well with their size and dimensions were recorded and correlated against solution conditions. Duplicate experiments indicate the reproducibility of the technique. Although it is well known that crystal numbers increase with increasing supersaturation, large changes in crystal number were also correlated against solution conditions of temperature, pH and salt concentration over the same supersaturation ranges. Analysis of these results enhance our understanding of the effect of solution conditions such as the dramatic effect that small changes in charge and ionic strength can have on the number of tetragonal lysozyme crystals that form and grow in solution.

Judge, Russell A.↗

NASA NTRS2000

Predictors of Behavior and Performance in Extreme Environments: The Antarctic Space Analogue Program

To determine which, if any, characteristics should be incorporated into a select-in approach to screening personnel for long-duration spaceflight, we examined the influence of crewmember social/ demographic characteristics, personality traits, interpersonal needs, and characteristics of station physical environments on performance measures in 657 American men who spent an austral winter in Antarctica between 1963 and 1974. During screening, subjects completed a Personal History Questionnaire which obtained information on social and demographic characteristics, the Deep Freeze Opinion Survey which assessed 5 different personality traits, and the Fundamental Interpersonal Relations Orientation-Behavior (FIRO-B) Scale which measured 6 dimensions of interpersonal needs. Station environment included measures of crew size and severity of physical environment. Performance was assessed on the basis of combined peer-supervisor evaluations of overall performance, peer nominations of fellow crewmembers who made ideal winter-over candidates, and self-reported depressive symptoms. Social/demographic characteristics, personality traits, interpersonal needs, and characteristics of station environments collectively accounted for 9-17% of the variance in performance measures. The following characteristics were significant independent predictors of more than one performance measure: military service, low levels of neuroticism, extraversion and conscientiousness, and a low desire for affection from others. These results represent an important first step in the development of select-in criteria for personnel on long-duration missions in space and other extreme environments. These criteria must take into consideration the characteristics of the environment and the limitations they place on meeting needs for interpersonal relations and task performance, as well as the characteristics of the individuals and groups who live and work in these environments.

Palinkas, Lawrence A.↗

NASA NTRS2000

Mars Immunoassay Life Detection Instrument (MILDI)

The direct detection of organic biomarkers for living or fossil microbes on Mars by an in situ instrument is a worthy goal for future lander missions. We have proposed an instrument based on immunological reactions to specific antibodies to cause activation of fluorescent stains. Antibodies are raised or acquired to a variety of general and specific substances that might be in Mars soil. These antibodies are then combined with various fluorescent stains and applied to small numbered spots on a small (two to three centimeters) test plate where they become firmly attached after drying. On Mars, a sample of soil from a trench or drill core is extracted with water and/or an organic solvent that is then applied to the test plate. Any substance, which has an antibody on the test plate, will react with its antibody and activate its fluorescent stain. A small ultraviolet light source will illuminate the test plate, which is observed with a small CCD camera. The numbered spots that fluoresce indicate the presence of the tested-for substance, and the intensity indicates relative amounts. The entire instrument can be quite small and light, on the order of ten cm in each dimension. A possible choice for light source may be small UV lasers at several wavelengths. Up to 1000 different sample spots can be placed on a plate 3 cm on a side, but a more practical number might be 100. Each antibody can have a redundant position for independent verification of reaction. Some of the wells or spots can contain simply standard fluorescent stains used to detect live cells, dead cells, DNA, etc. These the stains in these spots may be directly activated; no antibodies are necessary.

McKay, David↗

NASA NTRS1994

An Approximate Kalman Filter for Ocean Data Assimilation; An Example with an Idealized Gulf Stream Model

A practical method of data assimilation for use with large, nonlinear, ocean general circulation models is explored. A Kalman filter based on approximations of the state error covariance matrix is presented, employing a reduction of the effective model dimension, the error's asymptotic steady-state limit, and a time-invariant linearization of the dynamic model for the error integration. The approximations lead to dramatic computational savings in applying estimation theory to large complex systems. We examine the utility of the approximate filter in assimilating different measurement types using a twin experiment of an idealized Gulf Stream. A nonlinear primitive equation model of an unstable east-west jet is studied with a state dimension exceeding 170,000 elements. Assimilation of various pseudo measurements is examined, including velocity, density, and volume transport at localized arrays, and realistic distributions of satellite altimetry and acoustic tomography observations. Results are compared in terms of their effects on the accuracies of the estimation. The approximate filter is shown to outperform a previous study that used an empirical nudging scheme. The examples demonstrate that useful approximate estimation errors can be computed in a practical manner for general circulation models.

['Kalman↗

DOE OSTI2022

Topological Gauge Actions on the Lattice as Overlap Fermion Determinants

Overlap fermion on the lattice has been shown to properly reproduce topological aspects of gauge fields. In this paper, we review the derivation of Overlap fermion formalism in a torus of three space-time dimensions. Using the formalism, we show how to use the Overlap fermion determinants in the massless and infinite mass limits to construct different continuum topological gauge actions, such as the level-k Chern–Simons action, “half-CS” term and the mixed Chern–Simons (BF) coupling, in a gauge-invariant lattice UV regulated manner. Taking special Abelian and non-Abelian background fields, we demonstrate numerically how the lattice formalism beautifully reproduces the continuum expectations, such as the flow of action under large gauge transformations.

2 + 1 dimensions↗

NASA NTRS1984

Effects of the pressure perturbation field in numerical models of unidirectionally sheared thunderstorm convection - Two versus three dimensions

The physical roles of 'buoyant' and 'dynamic' pressure components, and the distinction between buoyant and hydrostatic pressure perturbations, are aspects of the pressure perturbation field in strongly sheared convective storms studied by means of two- and three-dimensional anelastic numerical modeling experiments with common environmental profiles. The pressure analysis clarifies the differences between two- and three-dimensional storms. In the main updraft, strong midlevel thermal buoyancy is partly opposed by a downward-perturbed vertical pressure gradient force. This, however, occurs to a much greater extent in two dimensions than in three, contributing to smaller net upward accelerations. While the buoyant and hydrostatic fields are intimately related to the total buoyancy distribution, the buoyant pressure perturbation is smoother and of lower amplitude than its hydrostatic counterpart. For the model experiments, this distinction is far greater in three dimensions than in two, in association with the smaller scale of the active convection in three dimensions.

Schlesinger, R. E.↗

DOE OSTI2022

Finite-Difference Simulation for Infrasound Generated by Finite-Extent Ground Motions

Underground explosions can produce infrasound in the atmosphere, and the wavefield characteristics are often governed by the ground surface motions. Finite-difference methods are popular for infrasound simulation as their generality and robustness allow for complex atmospheric structures and surface topography. A simple point-source approximation is often used because infrasound wavelengths tend to be large relative to the source dimensions. However, this assumption may not be able to capture the complexity of explosion-induced ground motions if the surface area is not compact, and appropriate source models must be incorporated into the finite-difference simulations for accurate infrasound prediction. In this study, we develop a point source representation of the complex ground motions for infrasound sources. Instead of a single point source, we use a series of point sources distributed over the source area. These distributed point sources can be equivalent to air volume changes produced by the ground motions in the atmosphere. Further, we apply the distributed point-source method to a series of buried chemical explosions conducted during the Source Physics Experiment Phase I. Epicentral ground-motion measurements during the experiments provide a way to calculate accurate distributed point sources. We validate and evaluate the accuracy of distributed point source approach for infrasound simulations by direct comparison with acoustic observations in the field experiment.

58 GEOSCIENCES↗

NASA NTRS1983

A rotationally biased upwind difference scheme for the Euler equations

The upwind difference schemes of Godunov, Osher, Roe and van Leer are able to resolve one dimensional steady shocks for the Euler equations within one or two mesh intervals. Unfortunately, this resolution is lost in two dimensions when the shock crosses the computing grid at an oblique angle. To correct this problem, a numerical scheme was developed which automatically locates the angle at which a shock might be expected to cross the computing grid and then constructs separate finite difference formulas for the flux components normal and tangential to this direction. Numerical results which illustrate the ability of this method to resolve steady oblique shocks are presented.

Davis, S. F.↗

NASA NTRS1984

A rotationally biased upwind difference scheme for the Euler equations

Davis, S. F.↗

DOE OSTI2023

Bio-Templated Chiral Zeolitic Imidazolate Framework for Enantioselective Chemoresistive Sensing

Chiral metal–organic frameworks (MOFs) have gained rising attention as ordered nanoporous materials for enantiomer separations, chiral catalysis, and sensing. Among those, chiral MOFs are generally obtained through complex synthetic routes by using a limited choice of reactive chiral organic precursors as the primary linkers or auxiliary ligands. Here, we report a template-controlled synthesis of chiral MOFs from achiral precursors grown on chiral nematic cellulose-derived nanostructured bio-templates. We demonstrate that chiral MOFs, specifically, zeolitic imidazolate framework (ZIF), unc-[Zn(2-MeIm) 2 , 2-MeIm=2-methylimidazole], can be grown from regular precursors within nanoporous organized chiral nematic nanocelluloses via directed assembly on twisted bundles of cellulose nanocrystals. The template-grown chiral ZIF possesses tetragonal crystal structure with chiral space group of P4 1 , which is different from traditional cubic crystal structure of I-43 m for freely grown conventional ZIF-8. The uniaxially compressed dimensions of the unit cell of templated ZIF and crystalline dimensions are signatures of this structure. We observe that the templated chiral ZIF can facilitate the enantiotropic sensing. It shows enantioselective recognition and chiral sensing abilities with a low limit of detection of 39 μM and the corresponding limit of chiral detection of 300 μM for representative chiral amino acid, D- and L- alanine.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2022

Evaluating efficacy of indoor non-pharmaceutical interventions against COVID-19 outbreaks with a coupled spatial-SIR agent-based simulation framework

Contagious respiratory diseases, such as COVID-19, depend on sufficiently prolonged exposures for the successful transmission of the underlying pathogen. It is important that organizations evaluate the efficacy of non-pharmaceutical interventions aimed at mitigating viral transmission among their personnel. We have developed a operational risk assessment simulation framework that couples a spatial agent-based model of movement with an agent-based SIR model to assess the relative risks of different intervention strategies. By applying our model on MIT’s Stata center, we assess the impacts of three possible dimensions of intervention: one-way vs unrestricted movement, population size allowed onsite, and frequency of leaving designated work location for breaks. We find that there is no significant impact made by one-way movement restrictions over unrestricted movement. Instead, we find that reducing the frequency at which individuals leave their workstations combined with lowering the number of individuals admitted below the current recommendations lowers the likelihood of highly connected individuals within the contact networks that emerge, which in turn lowers the overall risk of infection. We discover three classes of possible interventions based on their epidemiological effects. By assuming a direct relationship between data on secondary attack rates and transmissibility in the agent-based SIR model, we compare relative infection risk of four respiratory illnesses, MERS, SARS, COVID-19, and Measles, within the simulated area, and recommend appropriate intervention guidelines.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2025

Direct detection of dark baryons naturally suppressed by ℋ-parity

We identify symmetries in a broad class of vectorlike confining dark sectors that forbid the leading electromagnetic moments that would ordinarily mediate dark baryon scattering with the Standard Model. The absence of these operators implies dark baryon dark matter has much smaller cross sections for elastic scattering off nuclei, leading to suppressed direct detection signals. In the confined description, we identify an “ℋ-parity” symmetry that exists in any dark sector with dark quarks transforming under a vectorlike representation of a new confining SU(𝑁 𝑐 ) gauge theory as well as a vectorlike representation of the electroweak group SU⁡(2) 𝐿 . The parity is independent of 𝑁 𝑐 and 𝑁 𝑓 , though it is essential that the dark quarks are neutral under hypercharge. This parity forbids dark hadron electric and magnetic dipole moments, charge radius, and anapole moment, while permitting dimension-7 operators that include polarizability, electroweak loop-induced interactions, and lower-dimensional electromagnetic transition moments between different neutral dark baryon states. We work out an explicit example, 𝑁 𝑐 = 𝑁 𝑓 = 3, that is the most minimal theory with fermionic dark baryons. In this specific model, we use the nonrelativistic quark model to show the magnetic dipole moment and charge radius vanish, while the transition moments are nonzero, consistent with ℋ-parity. We discuss the implications of a suppressed direct detection signal, emphasizing that this broad class of models provide a well-motivated target for future colliders.

composite models↗

DOE OSTI2020

Beyond the Standard Model Explanations of GW190521

The LIGO-Virgo Collaboration has recently announced the detection of a heavy binary black hole merger, with component masses that are difficult to account for in standard stellar structure theory. In this Letter, we propose several explanations based on models of new physics, including new light particle losses, modified gravity, large extra dimensions, and a small magnetic moment of the neutrino. Each of these affect the physics of the pair instability differently, leading to novel mechanisms for forming black holes inside the mass gap.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

NASA NTRS1972

Quadrupole ion pump performance characteristics.

A new nonmagnetic ion pump is described that resembles a quadrupole ionization gauge. The dimensions are larger, and hyperbolically shaped electrodes replace the four rods. Pumping speeds (4-100 liters per sec) for different gases at various peak voltages (1000-3000 V) at corresponding frequencies (57-100 MHz) and at different pressures (10 microtorr to 1 nanotorr) are reported.

Schwarz, H.↗

NASA NTRS1980

Spacecraft measurements of the elemental and isotopic composition of solar energetic particles

Within the past few years, instruments flown on satellites and space probes have made significant progress in measuring the elemental and isotopic composition of energetic heavy nuclei accelerated in solar flares. These new observations are discussed, focusing on: (1) the energy dependence of the elemental composition at energies not greater than 1 MeV/nucleon; (2) flare to flare variations in the composition; and (3) comparisons of the average solar particle abundances (Z not less than 2 and not greater than 28) with other measures of the solar composition, including photospheric, coronal, and solar wind observations. These comparisons have led to the suggestion that solar flares sample the composition of the corona. Isotopic measurements of heavy solar flare nuclei have recently added a new dimension to these studies. In particular, the isotopic composition of solar flare neon has been found to be significantly different from that measured in the solar wind, but consistent with the meteoritic component neon-A.

Mewaldt, R. A.↗