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At least 559 records · Page 31

Cross-correlation analysis of X-ray photon correlation spectroscopy to extract rotational diffusion coefficients

Coefficients for translational and rotational diffusion characterize the Brownian motion of particles. Emerging X-ray photon correlation spectroscopy (XPCS) experiments probe a broad range of length scales and time scales and are well-suited for investigation of Brownian motion. While methods for estimating the translational diffusion coefficients from XPCS are well-developed, there are no algorithms for measuring the rotational diffusion coefficients based on XPCS, even though the required raw data are accessible from such experiments. In this paper, we propose angular-temporal cross-correlation analysis of XPCS data and show that this information can be used to design a numerical algorithm (Multi-Tiered Estimation for Correlation Spectroscopy [MTECS]) for predicting the rotational diffusion coefficient utilizing the cross-correlation: This approach is applicable to other wavelengths beyond this regime. We verify the accuracy of this algorithmic approach across a range of simulated data.

97 MATHEMATICS AND COMPUTING↗

A methodology for generating reduced-order models for large-scale buildings using the Krylov subspace method

Developing a computationally efficient but accurate building energy simulation (BES) model is important for many purposes. Model order reduction (MOR) methods are attractive and much more reliable than identification approaches, since it directly extract a lower-dimensional model from a detailed physics-based model without any pre-simulations. However, because of computational and data storage requirements, there are challenges of applying these methods to a large-scale building. To overcome the problem, this work introduces the Krylov subspace method to the building science field. Technical issues of applying the method to building applications are addressed and a suitable algorithm that overcomes those challenges is presented. Furthermore, to demonstrate the reliability of the algorithm, comparisons between the resulted reduced-order model (ROM) and a high-fidelity model from a commercial BES software for a 60-zone case study building are provided. The ROM was a factor of 100 faster than the high fidelity model but with high accuracy.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Femtosecond pulse parameter estimation from photoelectron momenta using machine learning

Abstract Deep learning models have provided huge interpretation power for image-like data. Specifically, convolutional neural networks (CNNs) have demonstrated incredible acuity for tasks such as feature extraction or parameter estimation. Here we test CNNs on strong-field ionization photoelectron spectra, training on theoretical data sets to ‘invert’ experimental data. Pulse characterization is used as a ‘testing ground’, specifically we retrieve the laser intensity, where ‘traditional’ measurements typically lead to 20% uncertainty. We report on crucial data augmentation techniques required to successfully train on theoretical data and return consistent results from experiments, including accounting for detector saturation. The same procedure can be repeated to apply CNNs in a range of scenarios for strong-field ionization. Using a predictive uncertainty estimation, reliable laser intensity uncertainties of a few percent can be extracted, which are consistently lower than those given by traditional techniques. Using interpretability methods can reveal parts of the distribution that are most sensitive to laser intensity, which can be directly associated with holographic interferences. The CNNs employed provide an accurate and convenient ways to extract parameters, and represent a novel interpretational tool for strong-field ionization spectra.

Szołdra, Tomasz (ORCID:0000000228970506)↗

A comparison between ShapeFit compression and Full-Modelling method with PyBird for DESI 2024 and beyond

DESI aims to provide one of the tightest constraints on cosmological parameters by analysing the clustering of more than thirty million galaxies. However, obtaining such constraints requires special care in validating the methodology and efforts to reduce the computational time required through data compression and emulation techniques. In this work, we perform a rigorous validation of the PyBird power spectrum modelling code with both a traditional emulated Full-Modelling approach and the model-independent ShapeFit compression approach. By using cubic box simulations that accurately reproduce the clustering and precision of the DESI survey, we find that the cosmological constraints from ShapeFit and Full-Modelling are consistent with each other at the ∼ 0.5σ level for the ΛCDM model. Both ShapeFit and Full-Modelling are also consistent with the true ΛCDM simulation cosmology down to a scale of k max = 0.20 hMpc -1 even after including the hexadecapole. For extended models such as the wCDM and the oCDM models, we find that including the hexadecapole can significantly improve the constraints and reduce the modelling errors with the same k max . While their discrepancies between the constraints from ShapeFit and Full-Modelling are more significant than ΛCDM, they remain consistent within 0.7σ. Lastly, we also show that the constraints on cosmological parameters with the correlation function evaluated from PyBird down to s min = 30h -1 Mpc are unbiased and consistent with the constraints from the power spectrum.

79 ASTRONOMY AND ASTROPHYSICS↗

Generative machine learning for detector response modeling with a conditional normalizing flow

In this paper, we explore the potential of generative machine learning models as an alternative to the computationally expensive Monte Carlo (MC) simulations commonly used by the Large Hadron Collider (LHC) experiments. Our objective is to develop a generative model capable of efficiently simulating detector responses for specific particle observables, focusing on the correlations between detector responses of different particles in the same event and accommodating asymmetric detector responses. Here, we present a conditional normalizing flow model ($\mathcal{CNF}$) based on a chain of Masked Autoregressive Flows, which effectively incorporates conditional variables and models high-dimensional density distributions. We assess the performance of the $\mathcal{CNF}$ model using a simulated sample of Higgs boson decaying to diphoton events at the LHC. We create reconstruction-level observables using a smearing technique. We show that conditional normalizing flows can accurately model complex detector responses and their correlation. This method can potentially reduce the computational burden associated with generating large numbers of simulated events while ensuring that the generated events meet the requirements for data analyses. We make our code available at https://github.com/allixu/normalizing_flow_for_detector_response

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Evaluation of the response to electrons and pions in the scintillating fiber and lead calorimeter for the future electron-ion collider

The performance of the Baby Barrel Electromagnetic Calorimeter (Baby BCAL) — a small-scale lead-scintillating-fiber (Pb/ScFi) prototype of the GlueX Barrel Electromagnetic Calorimeter (BCAL) — was tested in a dedicated beam campaign at the Fermilab Test Beam Facility (FTBF). This study provides a benchmark for the Pb/ScFi component of the future Barrel Imaging Calorimeter (BIC) in the ePIC detector at the Electron-Ion Collider (EIC). The detector response to electrons and pions was studied at beam energies between 4 and 10 GeV, extending previous GlueX tests to a higher energy regime. The calibrated detector exhibits good linearity within uncertainties, and its electron energy resolution meets EIC requirements. The data further constrain the constant term in the energy resolution to below 1.9%, improving upon previous constraints at lower energies. Simulations reproduce key features of the electron and pion data within the limitations of the collected dataset and the FTBF test environment. Electron-pion separation in the test beam setup was analyzed using multiple methods, incorporating varying degrees of beam-related effects. The inclusion of longitudinal shower profile information enhanced the separation performance, underscoring its relevance for the full-scale BIC in ePIC. These results provide essential benchmarks for the Pb/ScFi section of the future BIC, validating detector simulations and guiding optimization strategies for electron-pion discrimination.

47 OTHER INSTRUMENTATION↗

Exploring Secondary Markets to Improve Circularity: A Comparative Case Study of Photovoltaics and Hard-Disk Drives

Each year renewable energy generation increases notably with solar panel installations, but these panels have a limited lifespan and will produce between 2 and 4 million metric tons of waste by 2040. Similarly, there are currently between 20 to 70 million hard-disk drives (HDDs) reaching end-of-life (EOL) annually. The circular economy (CE) strives to recycle and reuse materials that are rare and expensive to obtain, minimizing waste. However, studying the potential circularity of photovoltaics (PV) and HDDs requires various data, for instance, on the maturity of the secondhand markets. In this context, the objective of the present study is to identify the current state of secondhand PV and HDD markets. After conducting a literature review, an automated data collection process was set up for that purpose. The analysis of the literature and collected data assess the maturity of the secondhand PV modules and HDDs markets and highlight differences between them.

agent-based modelling↗

Machine-learning Kohn–Sham potential from dynamics in time-dependent Kohn–Sham systems

Abstract The construction of a better exchange-correlation potential in time-dependent density functional theory (TDDFT) can improve the accuracy of TDDFT calculations and provide more accurate predictions of the properties of many-electron systems. Here, we propose a machine learning method to develop the energy functional and the Kohn–Sham potential of a time-dependent Kohn–Sham (TDKS) system is proposed. The method is based on the dynamics of the Kohn–Sham system and does not require any data on the exact Kohn–Sham potential for training the model. We demonstrate the results of our method with a 1D harmonic oscillator example and a 1D two-electron example. We show that the machine-learned Kohn–Sham potential matches the exact Kohn–Sham potential in the absence of memory effect. Our method can still capture the dynamics of the Kohn–Sham system in the presence of memory effects. The machine learning method developed in this article provides insight into making better approximations of the energy functional and the Kohn–Sham potential in the TDKS system.

97 MATHEMATICS AND COMPUTING↗

A semblance measure for model comparison

Algorithmic and computational advances have made it possible that geophysical survey and earth model design can be aided by many systematic trial inverse-modelling runs with synthetic data. Such may, for example, come up in machine-learning approaches. Automated image appraisal pertaining to such applications will involve common statistical tests for goodness-of-data fit as a primary evaluation method. However, solution non-uniqueness may render multiple images equivalent in terms of their data fit, requiring secondary categorizers. A logical choice for classifying synthetic-imaging results quantifies the goodness of model fit where a known reference model replaces the observational input. The task of model intercomparison in terms of measuring the resemblance to the reference model poses challenges to common distance-based metrics like root mean square error and mean absolute error. First, distance-based metrics can introduce spurious contributions when smooth models with fuzzy target contours are to be compared against a sharp reference. Second, large differences due to parameter-estimation overshoots can dominate distance metrics. Here, we propose a remedy that is referred to as semblance and is based on the idea of logistic functions, where a binary-dependent variable adds non-zero or zero accumulation terms for the, respectively, passing or failing of preset target thresholds. This classifying approach is amenable to an objective where model feature recognition is primary. Numerical comparisons to distance-based metrics provide evidence for the advantages of the semblance in view of this objective. Geophysical imaging in conjunction with machine-learning is seen as a benefitting upcoming application area.

58 GEOSCIENCES↗

Concordance cosmology?

ABSTRACT We propose a new intuitive metric for evaluating the tension between two experiments, and apply it to several data sets. While our metric is non-optimal, if evidence of tension is detected, this evidence is robust and easy to interpret. Assuming a flat Lambda cold dark matter (ΛCDM) cosmological model, we find that there is a modest 2.2σ tension between the Dark Energy Survey (DES) Year 1 results and the Planck measurements of the cosmic microwave background. This tension is driven by the difference between the amount of structure observed in the late-time Universe and that predicted from fitting the Planck data, and appears to be unrelated to the tension between Planck and local estimates of the Hubble rate. In particular, combining DES, baryon acoustic oscillations, big bang nucleosynthesis, and supernovae measurements recover a Hubble constant and sound horizon consistent with Planck, and in tension with local distance–ladder measurements. If the tension between these various data sets persists, it is likely that reconciling all current data will require breaking the flat ΛCDM model in at least two different ways: one involving new physics in the early Universe, and one involving new late-time Universe physics.

79 ASTRONOMY AND ASTROPHYSICS↗

Influence of Comptonization region over the ambiance of accretion disc in active galactic nucleus

ABSTRACT Understanding the radiative and physical structures of inner region of a few 100 pc of active galactic nucleus (AGNs) is important to constrain the causes of their activities. Although the X-ray emission from the Comptonization region/corona and the accretion disc regulates the broad-line emission regions and torus structures, the exact mutual dependency is not understood well. We performed correlation studies for X-ray, mid-infrared, and different components of Balmer emission lines for the selected sample of AGNs. Almost 10 different parameters and their interdependencies were explored in order to understand the underlying astrophysics. We found that the X-ray luminosity has a linear dependency on the various components of broad Balmer emission lines (e.g. L$_{\text{2-10 keV}}\, \propto$ L$^{0.78}_{\text{H}\beta ^{\text{B}}}$) and found a strong dependency on the optical continuum luminosity (L$_{\text{2-10 keV}}\, \propto$ L$^{0.86}_{5100\, \mathring{\rm A}}$). For a selected sample, we also observed a linear dependency between X-ray and mid-infrared luminosity (L$_{\text{2-10 keV}}\, \propto$ L$^{0.74}_{6\, \mu \text{m}}$). A break point was observed in our correlation studies for X-ray power-law index, Γ, and mass of black hole at ∼ log (M/M⊙) = 8.95. Similarly, the relations between Γ and full width at half-maximum (FWHM) of H α and H β broad components show breaks at FWHMH α = 7642 ± 657 km s−1 and FWHMH β = 7336 ± 650 km s−1. However, more data are required to confine the breaks locations exactly. We noted that Γ and Eddington ratios are negatively correlated to Balmer decrements in our selected sample. We analysed and discussed about the implications of new findings in terms of interaction AGN structures.

79 ASTRONOMY AND ASTROPHYSICS↗

Deeplasmid: deep learning accurately separates plasmids from bacterial chromosomes

Plasmids are mobile genetic elements that play a key role in microbial ecology and evolution by mediating horizontal transfer of important genes, such as antimicrobial resistance genes. Many microbial genomes have been sequenced by short read sequencers and have resulted in a mix of contigs that derive from plasmids or chromosomes. New tools that accurately identify plasmids are needed to elucidate new plasmid-borne genes of high biological importance. We have developed Deeplasmid, a deep learning tool for distinguishing plasmids from bacterial chromosomes based on the DNA sequence and its encoded biological data. It requires as input only assembled sequences generated by any sequencing platform and assembly algorithm and its runtime scales linearly with the number of assembled sequences. Deeplasmid achieves an AUC–ROC of over 89%, and it was more accurate than five other plasmid classification methods. Finally, as a proof of concept, we used Deeplasmid to predict new plasmids in the fish pathogen Yersinia ruckeri ATCC 29473 that has no annotated plasmids. Deeplasmid predicted with high reliability that a long assembled contig is part of a plasmid. Using long read sequencing we indeed validated the existence of a 102 kb long plasmid, demonstrating Deeplasmid's ability to detect novel plasmids.

59 BASIC BIOLOGICAL SCIENCES↗

Improved single-particle phase-space distributions for viscous fluid dynamic models of relativistic heavy ion collisions

Comparison of hydrodynamic calculations with experimental data inevitably requires a model for converting the fluid to particles. For shear viscous fluids, several different conversion models have been proposed, such as the quadratic Grad corrections, the Strickland-Romatschke (SR) ansatz, self-consistent shear corrections from linearized kinetic theory, or corrections from the relaxation time approach. We show, via comparison to nonlinear 2 → 2 kinetic theory evolution, that even for low specific shear viscosities 0.03 ≲ $\textit{η/s}$ ≲ 0.2 , these four models have varying accuracy and still significant errors in reproducing particle phase space densities from hydrodynamic fields. Moreover, we demonstrate that the overall reconstruction error of additive shear viscous $f = f_{eq} + δf$ models dramatically reduces by up to one order of magnitude, if one ensures through exponentiation that $\textit{f}$ is always positive. Further, we also illustrate how even more accurate viscous $\textit{δf}$ models can be constructed by incorporating the first time derivatives of hydrodynamic fields to account for the past evolution of the system. Such time derivatives are readily available in hydrodynamic simulations, though usually not included in the output. Though our comparisons are limited to a one-component massless system undergoing a (0 + 1)-dimensional (0 + 1D) longitudinal boost-invariant expansion, we expect that the improved models will be useful in 2 + 1D and 3 + 1D hydrodynamic studies as well.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Code package for calculating modified cosmic ionization and thermal histories with dark matter and other exotic energy injections

Here we present a new public Python package, DarkHistory, for computing the effects of dark matter annihilation and decay on the temperature and ionization history of the early universe. DarkHistory simultaneously solves for the evolution of the free electron fraction and gas temperature, and for the cooling of annihilation/decay products and the secondary particles produced in the process. Consequently, we can self-consistently include the effects of both astrophysical and exotic sources of heating and ionization, and automatically take into account backreaction, where modifications to the ionization/temperature history in turn modify the energy-loss processes for injected particles. We introduce a number of worked examples, demonstrating how to use the code in a range of different configurations, in particular for arbitrary dark matter masses and annihilation/decay final states. Possible applications of DarkHistory include mapping out the effects of dark matter annihilation/decay on the global 21 cm signal and the epoch of reionization, as well as the effects of exotic energy injections other than dark matter annihilation/decay. The code is available at https://github.com/hongwanliu/DarkHistory with documentation at https://darkhistory.readthedocs.io. Data files required to run the code can be downloaded at https://doi.org/10.7910/DVN/DUOUWA.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Cryo-EM sample preparation for high-resolution structure studies

High-resolution structures of biomolecules can be obtained using single-particle cryo-electron microscopy (SPA cryo-EM), and the rapidly growing number of structures solved by this method is encouraging more researchers to utilize this technique. As with other structural biology methods, sample preparation for an SPA cryo-EM data collection requires some expertise and an understanding of the strengths and limitations of the technique in order to make sensible decisions in the sample-preparation process. Here, in this article, common strategies and pitfalls are described and practical advice is given to increase the chances of success when starting an SPA cryo-EM project.

36 MATERIALS SCIENCE↗

A Multiport DC Transformer to Enable Flexible Scalable DC as a Service

The rapid adoption of new DC loads and sources, including photovoltaic arrays, DC fast charging of electric vehicle, battery energy storage and data centers, requires a large amount of DC power conversion. A majority of new deployments also necessitate the integration of multiple DC loads and sources at one site. The traditional approach to serve these new applications relies on multiple standard power converters, each dedicated to a source or load, and results in highly customized systems, with challenging control coordination, complex protection strategies, and poor scalability. Instead, this paper proposes the concept of a multiport DC transformer (MDCT) as a modular building block for realizing a flexible, scalable DC as a Service system and address this rapidly growing need. The MDCT uses the S4T to achieve very tight control of cycle-by-cycle energy exchange between multiple ports, with high efficiency. A single multiport converter replaces 4-6 distinct converters, integrates all energy flows and manages protection. As a result, a new layered control architecture is introduced to ensure stability and scalability of the MDCT, with multiple S4T power converter building blocks connected in parallel to realize a fully modular system and reach the target power levels.

30 DIRECT ENERGY CONVERSION↗

Investigating Resilience of Loops in HPC Programs: A Semantic Approach with LLMs

Soft errors have become one of the major concerns for the error resilience of the HPC applications as those errors may cause HPC applications to generate serious outcomes such as silent data corruptions (SDCs). Protecting the applications from soft errors is an essential while challenging task. Among different approaches, obtaining a profound understanding of the resilience proneness of an application is very important to devise efficient error detection and recovery strategies. Given the scale of the HPC applications both in the code size and execution time, there are often cases that the error propagation analysis on such applications would produce a massive volume of unstructured data, which requires a significant amount of efforts, to process and to obtain indicating actions towards error protection. In this paper, we present a control-flow based visual analysis framework to help the users conduct error propagation analysis and identify the critical sections of a program that may have a higher likelihood of leading to erroneous outcomes when affected by the control flow related errors. We also design and implement the scalable visualization framework - ResilienceVis that efficiently and effectively visualizes the affected program states under errors and the propagation traces for an application in a user-friendly manner, and eventually, we combine the analysis and visualization to exhibit the error-proneness of the different sections of applications.

Jiang, Hailong↗

Autonomous Wireless Technology Detection in Seamless IoT Applications

The ever-increasing use of Internet of Things (IoT) devices results in the implementation of multiple wireless technologies that would not only cater their data rate requirements but also support various applications. To optimize the energy efficiency and security of the wireless transmission, it is imperative to identify the wireless technologies in various IoT implementations. Many of the existing approaches are based on measuring only the receiving signal strength indicator (RSSI). However, such approaches may not work well because of transmit power control and complex channel variations among different wireless technologies. In this article, we propose an autonomous wireless detection scheme that considers multiple distinguishable physical (PHY)-layer settings for real-time identification of wireless technologies for real-time applications. Specifically, the proposed scheme relies on the PHY-layer measurements of the targeted spectrum. Transmission settings, such as bandwidth, carrier frequency, and RSSI are estimated from the raw in-phase and quadrature-phase (I/Q) measurements. In addition, a symbol-level extraction scheme is implemented to extract unique features of modulation settings. These aforementioned features are applied to a machine learning process to identify the received wireless technologies. Compared with raw I/Q measurements, the extracted features are much simplified and, thus, the machine learning classifier can be designed with a simple structure for fast processing on IoT nodes. Finally, the proposed schemes are primarily evaluated theoretically, followed by implementing them on a USRP software-defined radio (SDR)-based hardware testbed. The evaluation results demonstrate high accuracy in the real-time detection of different wireless technologies for seamless IoT applications.

42 ENGINEERING↗