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At least 559 records · Page 31

Three Delayed Critical 15-Inch-Diameter Interacting Enriched (93.14) Uranium Metal Cylinders Without Moderator and Reflector

This report documents very accurately the configuration and the materials for experiments with three unmoderated, unreflected, interacting, coaxial, highly enriched, 15-in.-diameter, uranium metal cylinders performed at the Oak Ridge Critical Experiments Facility (ORCEF) in August and September 1963 and described in logbook E 20 associated with experiments in the East cell of ORCEF. The information is sufficiently accurate that it can be used as the basis for preparation of benchmarks for International Criticality Safety Benchmark Program (ICSBEP) at Idaho National laboratory. The thickness of the cylinders was varied and the spacing between them was adjusted to achieve a delayed critical configuration. The average enrichment of the uranium metal was 94.14 wt. % 235U. The heights of the 15-in.-diameter, equal-height cylinders varied from 1-1/8to 2.00 inches. All interacting cylinders were assembled coaxially with their flat faces parallel and their combined masses varied between 182 and 325 kilograms of HEU metal. The data from these six experiments described are judged to be acceptable for use as criticality safety benchmark experiments for the ICSBEP and EURATOM’s Nuclear Energy Agency nuclear criticality safety benchmark program, once the uncertainty analysis is completed. Based on previous ICSBEP benchmarks with this enriched uranium metal at ORCEF, it is expected that the uncertainties in measured keff could be as low as ± 0.0002.

36 MATERIALS SCIENCE↗

Lyman Alpha Blobs in a Filament at z=2.38

Bright, extended Lyman-alpha nebulae (known as blobs) appear to be common in the densest environments at high redshift, and may be an important stage in galaxy evolution. Up to now, Chandra data have not distinguished between the possible excitation mechanisms, but suggest that we are seeing dense excitation mechanisms, but suggest that we are seeing dense intracluster gas either falling into forming galaxies (cooling flows) or being expelled into the intracluster medium, enriching it. Optical and X-ray evidence also suggests that some blobs harbor AGN. We took a 20 ksec exposure with Chandra of four Lyman-alpha blobs in a large filament at $z=2.38$, which completed the X-ray observations of all currently known blobs. We will present flux constraints for the blobs from the Chandra data and optical spectra of the field taken with the AAT+2dF (see accompanying poster by Woodgate et al.). Possible mechanisms for the extended emission of the Lyman-alpha blobs will be discussed.

Williger, G.↗

A Thorium-rich Mare Basalt Rock Fragment from the Apollo 12 Regolith: A Sample from a Young Procellarum Flow?

In this abstract, we report on the composition, mineralogy and petrography of a basaltic rock fragment, 12032,366-18, found in the Apollo 12 regolith. Age data, collected as part of an investigation by Barra et al., will be presented in detail in. Here, only the age dating result is summarized. This rock fragment garnered our attention because it is significantly enriched in incompatible elements, e.g., 7 ppm thorium, compared to other known lunar basalts. Its mineral- and trace-element chemistry set it apart from other Apollo 12 basalts and indeed from all Apollo and Luna basalts. What makes it potentially very significant is the possibility that it is a sample of a relatively young, thorium-rich basalt flow similar to those inferred to occur in the Procellarum region, especially northwestern Procellarum, on the basis of Lunar Prospector orbital data. Exploiting the lunar regolith for the diversity of rock types that have been delivered to a landing site by impact processes and correlating them to their likely site of origin using remote sensing will be an important part of future missions to the Moon. One such mission is Moonrise, which would collect regolith samples from the South Pole-Aitken Basin, concentrating thousands of rock fragments of 3-20 mm size from the regolith, and returning the samples to Earth.

Jolliff, B. L.↗

Leafweb: Leaf Gas Exchange and Pulse-Amplitude Modulated Fluorometry for C4 Species, June 2026 Release

This dataset contains leaf gas exchange and Pulse-Amplitude Modulated (PAM) fluorometry for 98 C4 species. The C4 photosynthetic pathway employs specialized CO2 concentration mechanisms and Kranz anatomy to enrich CO2 concentration around Rubisco, the enzyme that catalyzes carbon fixation in the Calvin-Benson cycle to suppress photorespiration and increase the use efficiencies of light, nitrogen, and water as compared to the C3 photosynthetic pathways. Large-scale C4 photosynthetic datasets are relatively scarce, which has affected C4 photosynthesis research. To improve C4 photosynthetic data availability, Leafweb organized an effort to systematically collect, compile, standardize, and organize measurements of leaf gas exchange and/or Pulse-Amplitude Modulated (PAM) fluorometry of C4 species. This derived a C4 photosynthetic dataset containing measurements made by independent researchers in multiple countries in various environments (field, garden, or greenhouse). It covers three biochemical subtypes – the nicotinamide adenine dinucleotide phosphate-malic enzyme (NADP-ME), nicotinamide adenine dinucleotide-malic enzyme (NAD-ME), and phosphoenolpyruvate carboxykinase (PEP-CK) subtypes. This dataset is useful for using Artificial Intelligence / Machine Learning and mechanistic models to study C4 photosynthesis and compare across different biochemical subtypes. This dataset contains 3 compressed (*.zip) folders containing 1,892 data files in comma-separate values (*.csv) format. Additional metadata are provided: one data dictionary and a file-level metadata file in comma-separate values (*.csv) format and a user guide in PDF (*.pdf) format.

Zhou, Haoran [Tianjin University, China]↗

Nuclear Science for the Manhattan Project and Comparison to Today’s ENDF Data

Nuclear physics advances in the United States and Britain from 1939 to 1945 are described. The Manhattan Project’s work led to an explosion in our knowledge of nuclear science. A conference in April 1943 at Los Alamos provided a simple formula used to compute critical masses and laid out the research program needed to determine the key nuclear constants. In short order, four university accelerators were disassembled and reassembled at Los Alamos, and methods were established to make measurements on extremely small samples owing to the initial lack of availability of enriched 235U and plutonium. I trace the program that measured fission cross sections, fission-emitted neutron multiplicities and their energy spectra, and transport cross sections, comparing the measurements with our best understanding today as embodied in the Evaluated Nuclear Data File ENDF/B-VIII.0. The large nuclear data uncertainties at the beginning of the project, which often exceeded 25% to 50%, were reduced by 1945 often to less than 5% to 10%. Uranium-235 and plutonium-239 fission cross-section assessments in the fast mega-electron-volt range were reduced following more accurate measurements, and the neutron multiplicity $\overline{v}$ increased. By a lucky coincidence of canceling errors, the initial critical mass estimates were close to the final estimated masses. Some images from historical documents from our Los Alamos archives are shown. Many of the original measurements from these early years have not previously been widely available. Through this work, these data have now been archived in the international experimental nuclear reaction data library (EXFOR) in a collaboration with the International Atomic Energy Agency and Brookhaven National Laboratory.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Satellite Metallicity Enhancement I: Suppressed Star Formation, Stellar Mass Loss, and Enriched Inflow of DESI and EAGLE Galaxies around Massive Clusters

Environmental effects are a primary driver of elevated gas-phase metallicities in galaxies around massive clusters, but the underlying physical mechanisms for this satellite metallicity enhancement (SME) are still unclear. Using the Dark Energy Spectroscopic Instrument (DESI) Data Release 1, we present the first measurement of the average SME as a function of projected cluster-centric distance. The resulting profile reveals three distinct regimes: a steep decline from the cluster center, a plateau near the cluster boundary, and an extended downturn across several cluster radii. Remarkably, the complex shape and amplitude of this observed SME profile are successfully reproduced in the EAGLE cosmological simulation. Drawing insights from EAGLE, we develop a novel satellite chemical evolution model to decompose the observed SME into physical contributions from suppressed star formation, stellar mass loss, and enriched gas inflow. Our analysis shows that continuous accretion of enriched intracluster medium dominates the SME plateau within the cluster virial radius, while mass loss and quenching jointly drive the rapid metallicity decline in the cluster core. Our method disentangles the impacts of three environmental processes on galactic chemical enrichment in the cosmic web, providing a powerful framework for understanding cluster galaxy evolution with current and future spectroscopic surveys.

Lin, Yuanye [Shanghai Jiao Tong U.; Shanghai Jiaot↗

Leveraging BERT and Network-Based Attention Analysis for Identifying Treatment Milestones in EHRs

This study introduces a sophisticated data-driven framework for analyzing Electronic Health Records (EHRs) using transformer-based models to identify and disentangle overlapping treatment contexts. The framework leverages a preprocessing pipeline that transforms structured procedural codes into semantically enriched descriptive text, enabling the use of attention mechanisms to cluster medical events into treatment milestones—cohesive and distinct components of care processes. The methodology is rigorously validated using synthetic datasets derived from the MIMIC-III database, designed to simulate the heterogeneity and overlapping procedural contexts characteristic of real-world EHR scenarios. Quantitative evaluation highlights the framework’s robustness in disentangling concurrent care pathways, with attention metrics and unsupervised clustering approaches demonstrating the ability to preserve intra-context relationships while distinguishing inter-context dependencies. By addressing challenges inherent in data heterogeneity, this approach provides a foundation for uncovering complex treatment patterns, advancing clinical decision-making, and optimizing resource allocation in diverse healthcare environments.

Kim, Minsu [ORNL] (ORCID:0000000224185535)↗

Wetter Summers Mitigated Temperature Stress on Rocky Mountain Forests During the Last Interglacial Warm Period

Recent droughts have highlighted concerns of how rising summer temperatures will increase tree mortality rates across the western United States. We analyzed subfossil wood samples from Colorado dating to the last interglacial to assess the response of two common conifers to a previous warm period. The trees experienced comparable growth rates and water use efficiency during the interglacial relative to modern despite evidence from model simulations of a ~30% increase in evaporative demand during the peak of the growing season. High-resolution isotopic analysis of the wood samples show an enrichment in the late season cellulosic δ 18 O relative to modern samples, which we find was associated with increased reliance on summer rain. The data are consistent with model simulations showing the interglacial was associated with wetter summers across the western US. Here, we propose enhanced summer rain during this period compensated for drought stress imposed by higher evaporative demand.

58 GEOSCIENCES↗

Evidence for sub-Chandrasekhar Type Ia supernovae from the last major merger

ABSTRACT We investigate the contribution of sub-Chandrasekhar mass Type Ia supernovae to the chemical enrichment of the Gaia Sausage galaxy, the progenitor of a significant merger event in the early life of the Milky Way. Using a combination of data from Nissen & Schuster, the GALactic Archaeology with HERMES (GALAH) Data Release 3 [with 1D non-local thermal equilibrium (NLTE) abundance corrections], and the Apache Point Observatory Galactic Evolution Experiment (APOGEE) Data Release 16, we fit analytic chemical evolution models to a nine-dimensional chemical abundance space (Fe, Mg, Si, Ca, Cr, Mn, Ni, Cu, and Zn) in particular focusing on the iron-peak elements, Mn and Ni. We find that low [Mn/Fe] $\sim -0.15\, \mathrm{dex}$ and low [Ni/Fe] $\sim -0.3\, \mathrm{dex}$ Type Ia yields are required to explain the observed trends beyond the [α/Fe] knee of the Gaia Sausage (approximately at [Fe/H] $=-1.4\, \mathrm{dex}$). Comparison to theoretical yield calculations indicates a significant contribution from sub-Chandrasekhar mass Type Ia supernovae in this system (from ${\sim} 60\, \mathrm{per\, cent}$ to $100\, \mathrm{per\, cent}$ depending on the theoretical model with an additional ${\pm} 10\, \mathrm{per\, cent}$ systematic from NLTE corrections). We compare to results from other Local Group environments including dwarf spheroidal galaxies, the Magellanic Clouds, and the Milky Way’s bulge, finding the Type Ia [Mn/Fe] yield must be metallicity dependent. Our results suggest that sub-Chandrasekhar mass channels are a significant, perhaps even dominant, contribution to Type Ia supernovae in metal-poor systems, whilst more metal-rich systems could be explained by metallicity-dependent sub-Chandrasekhar mass yields, possibly with additional progenitor mass variation related to star formation history, or an increased contribution from Chandrasekhar mass channels at higher metallicity.

Sanders, Jason L.↗

The landscape of Chlamydomonas histone H3 lysine 4 methylation reveals both constant features and dynamic changes during the diurnal cycle

Chromatin modifications are epigenetic regulatory features with major roles in various cellular events, yet they remain understudied in algae. Here, we interrogated the genome-wide distribution pattern of mono- and trimethylated histone H3 lysine 4 (H3K4) using chromatin-immunoprecipitation followed by deep-sequencing (ChIP-seq) during key phases of the Chlamydomonas cell cycle: early G 1 phase, Zeitgeber Time 1 (ZT1), when cells initiate biomass accumulation, S/M phase (ZT13) when cells are replicating DNA and undergoing mitosis, and late G 0 phase (ZT23) when they are quiescent. Tri-methylated H3K4 was predominantly enriched at transcription start sites of the majority of protein coding genes (85%). The likelihood of a gene being marked by H3K4me3 correlated with it being transcribed at some point during the life cycle but not necessarily by continuous active transcription, as exemplified by early zygotic genes, which may remain transcriptionally dormant for thousands of generations between sexual cycles. The exceptions to this rule were around 120 loci, some of which encode non-poly-adenylated transcripts, such as small nuclear RNAs and replication-dependent histones that had H3K4me3 peaks only when they were being transcribed. Mono-methylated H3K4 was the default state for the vast majority of histones that were bound outside of transcription start sites and terminator regions of genes. A small fraction of the genome that was depleted of any H3 lysine 4 methylation was enriched for DNA cytosine methylation and the genes within these DNA methylation islands were poorly expressed. Besides marking protein coding genes, H3K4me3 ChIP-seq data served also as a annotation tool for validation of hundreds of long non-coding RNA genes.

59 BASIC BIOLOGICAL SCIENCES↗

Multi-omics of a model bacterial consortium deciphers details of chitin decomposition in soil

Soil microorganisms interact to carry out decomposition of complex organic carbon and nitrogen compounds, such as chitin, but the high diversity and complexity of the soil microbiome and habitat have posed a challenge to elucidating such interactions. Here, we sought to address this challenge by analysis of a model soil consortium (MSC-2) consisting of eight soil bacterial species. Our aim was to elucidate the specific roles of the member species during chitin metabolism. Samples were collected from MSC-2 incubated in chitin-enriched soil over 3 months. Multi-omics was used to understand how the community composition, transcripts, proteins, and chitin decomposition shifted over time. The data clearly and consistently revealed a temporal shift during chitin decomposition with defined contributions by individual species. A Streptomyces genus member (sp001905665) was a key player in early steps of chitin decomposition, with other MSC-2 members being central in carrying out later steps. These results illustrate how multi-omics applied to a defined consortium untangles the interactions between soil microorganisms.

chitin↗

Volume 9: Critical Facility with Add-On Ion Beam

Completion of the originally planned critical facility has been considered as part of the High Flux Isotope Reactor (HFIR) Sustaining and Enhancing Neutron Science Initiative at Oak Ridge National Laboratory (ORNL). A working group of ORNL staff members was formed to develop the idea and to recommend one or more configurations to best support future HFIR operations and scientific capacities. HFIR was designed with a critical pool in the reactor bay that was projected to be outfitted as a critical facility. The primary purpose of the planned critical facility was to measure the subcritical worth of fresh fuel elements to support startup requirements. However, the Y-12 National Security Complex already housed a critical facility that was used for this purpose. This report presents the working group’s efforts, including determination of the proposed critical facility’s high-impact benefits. A generic low-power critical facility would be employed for reactor physics measurements, code and data validation, reactor operator and staff training, and education. This facility would be instrumental in supporting current HFIR operations, conversion of HFIR to low-enriched uranium, existing light water reactor operations, and advanced reactor development and deployment.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Observations of interplanetary energetic charged particles from gamma-ray line solar flares

Results from ISEE-3 experiments on interplanetary energetic charged particles on June 7, June 21, and July 1, 1980 dealing with gamma ray producing solar flares are reported. The data were gathered by the Ultra Low Energy Wide Angle Telescope, which comprises a thin window, flow through proportional counter/solid-state detector composition telescope. Evidence of a specified time delay from an observed flare and the recording of 0.44-1.3 MeV electrons on ISEE-3 combined with quiescent periods of at least two hours before the observations and recording provides a link between the events. The data indicates interplanetary energetic particle enhancement, and a second, similar set of occurrences was also observed. Protons were accelerated up to 10-20 MeV. No enrichment of either He-3 or Fe was found.

Pesses, M. E.↗

Ionization states of helium in He-3-rich solar energetic particle events

Results of a systematic study of the ionic charge state of helium in the energy range 0.6-1.0 MeV/nucleon for He-3-rich solar energetic particle events during the time period August 1978 to October 1979 are reported. The data have been obtained with the Max-Planck-Institut/University of Maryland experiment on ISEE-3. Whereas for solar energetic particle events with no enrichment of He-3 relative to He-4 surprisingly large abundances of singly ionized helium have been reported recently, He-3-rich solar energetic particle events do not show significant abundances of He-3(+). This result is consistent with current theories explaining large compositional anomalies by mass per charge dependent selective heating of the minor ion species.

Klecker, B.↗

Organic Matter in Itokawa Particles

The first Hayabusa mission returned samples from the near-Earth S-type asteroid 25143 Itokawa to Earth in 2010[1]. Although Itokawa has a lithology related to ordinary chondrites(OCs) that typically have low organic contents, several Itokawa particles were found to contain organic matter (OM)[2-5]. However, there was not an explicit conclusion to the origin of the observed OMin these early studies. We have extended our search for OM into other Itokawa grains. Here, we report extraterrestrial OM (macromolecular carbon and amino acids) observed in six Itokawa particles(including a category1 particle: RA-QD02-0162[#62; also nicknamed “Amazon”],and five category3 carbon-rich particles:RA-QD02-0012[#12], RA-QD02-0078[#78], RB-CV-0029[#29], RB-CV-0080 [#80] and RB-QD04-0052[#52]).All allocated Itokawa samples were initially analysed by spot and point-by-point mapping Raman spectroscopic analysis at the Open University, UK. Amazon was then transferred and mounted into indium on an aluminium stub, which was studied with a NanoSIMS 50L ion microprobe for its H,C,N isotopic compositions. The rest of the samples were mounted in sterile gold foils, and the amino acid contents of their acid hydrolysed hot water extracts were obtained with a liquid chromatography with tandem fluorescence and accurate mass detection at NASA Goddard Space Flight Center, USA. Based on the observation of the Raman parameters(e.g. the peak locations and widths of the defect (D) and graphite (G) bands)[6], a significant variety of carbonaceous materials has been observed in Amazon. The carbonaceous materials include primitive and unaltered OM that shares similarity with the IOM in primitive (CI,CM,CR) carbonaceous chondrites, as well as OM that has been heavily graphitised. The organic structure of the heated material is best represented by nanocrystalline graphite, comparable to that observed for metamorphosed meteorites (e.g., L3–6 Inman, Tieschitz and New Concord,CV3 Allende, and EH4 Indarch),suggesting peak metamorphic temperatures (PMT) of >~600°C. The thermal history recorded in the graphitic OM agrees with PMT estimates for returned Itokawa regolith grains (600–800°C)[7].We have obtained the H,C,N isotopic compositions for the primitive OM in Amazon, which exhibits unambiguously extraterrestrial isotopic signatures (δD = +4868±2288‰; δ13C = −24±5‰; δ15N = +344±20‰), contrasting to the typically negative isotopic values obtained for terrestrial organic matter[8]. The δD and δ13C values of the organic material in Amazon are comparable to OCs, however, the δ15N value is higher than that typically observed for OCs (δ15N = −47 to +36‰), and is similar to that of CRs (δ15N = +153 to +309‰)[9].Our data suggest a genetic link between the primitive organic material observed in Itokawa to CRs and IDPs for they share similar D, 13C and 15N enrichments[10].The high carbon contents of the five category 3 Itokawa particles suggest potentially higher OM abundances, hence we extracted and analysed amino acids in these samples. Although terrestrial contamination was observed primarily as L-protein amino acids, several terrestrially uncommon non-protein amino acids were also observed at low abundances, such as β-aminoisobutyric acid (β-AIB),β-amino-n-butyric acid (β-ABA), and β-alanine. Itokawa amino acid content observed here was dissimilar to thermally altered OCs, but preliminarily analogous to more aqueously altered CR2s.Continued evolution of Itokawa is evident by the in fall of primitive organic material derived from CRs/IDPs, accounting for a complex interplay between the remnant Itokawa silicates with exogenous organics. The results reported here are the first evidence of extraterrestrial OM in asteroid material from a sample-return mission, showcasing a working protocol for analysing samples returned by the Hayabusa2 and OSIRIS-REx missions

Q. H. S. Chan↗

Tracing the Source of Carbon Oxides on the Large Moons of Uranus

The Uranian moons Ariel, Umbriel, Titania, and Oberon are enriched in CO 2 mixed with CO, but the origin(s) of these carbon oxides, be they primarily native or radiolytic, remain(s) uncertain. Using data collected by NIRSpec on the James Webb Space Telescope (JWST), we measured the spectral signature of CO 2 and other carbon oxides to help disentangle these hypotheses. Through comparison to laboratory data, we find that many of the detected spectral features are consistent with CO 2 ice, including 12 CO2 scattering peaks (4.15–4.26 μm), multilobe 13 CO 2 bands (4.35–4.43 μm), and CO 2 biphonon and triphonon modes (4.80–5.25 μm). Our measurements show that CO 2 and CO are concentrated on the trailing hemispheres of the inner moons Ariel and Umbriel, potentially supporting a radiolytic production hypothesis, consistent with prior ground-based results. However, many of the identified spectral features are only observed in thick crystalline ice deposits measured in the laboratory, which may be difficult to form via radiolysis of carbon-bearing material mixed in icy regoliths. Similarly, the data exhibit weak 4.02 and 4.40 μm bands, hinting at the presence of carbonate minerals and 13 CO 2 clathrates, respectively, possibly formed in the interiors of these moons. Furthermore, JWST has revealed that CO 2 is widespread at Uranus, present in its system of rings, ring moons, and irregular satellites, consistent with its largest moons accreting CO 2 and other carbon oxides from the Uranian subnebula. We conclude that exposed carbon oxides are potentially native, with their surface distributions shaped by charged particle irradiation and seasonal sublimation–condensation cycles.

Ice spectroscopy↗

R “SHINY” GUI DEVELOPMENT FOR URANIUM ISOTOPIC ANALYSIS WITH MATRIX-ASSISTED IONIZATION MASS SPECTROMETRY

The international nuclear safeguards community continues to seek rapid, accurate, and precise characterization capabilities for the in-field measurement of uranium isotopic compositions in nuclear facilities. Mass spectrometry (MS) is considered the “gold standard” for analysis of relatively long-lived actinides such as uranium (U) and plutonium; however, conventional MS analysis often requires time consuming sample preparation and complex analytical methodologies that are difficult to perform in-field or in-facility. Matrix assisted ionization (MAI) is a novel ambient ionization MS technique (i.e., MAI-MS) that potentially addresses these challenges due to the relative simplicity of the ionization phenomenon and ruggedness of ambient MS instrumentation. Savannah River National Laboratory (SRNL, USA) has demonstrated this technique for nanogram-level 235U/238U isotope ratio measurements within seconds, with percent-level analytical uncertainties capable of discriminating depleted, natural, and low-enriched uranium. Current experimental work on developing MAI methods for uranium isotopic analysis has been enabled by parallel development of a comprehensive MAI-MS data analysis suite at SRNL. Development of this bespoke data analysis software was necessary because commercially available ambient MS software is poorly suited for uranium isotope ratio measurement. The effort leverages the power of R, a popular open-source programming language, and Shiny, an R package providing tools for graphical user interface (GUI) and web interface coding. This software allows researchers without any programming experience to harness and utilize R’s considerable data analysis/visualization power.

LaBone, Elizabeth D.↗

Reinspection of a Clinical Proteomics Tumor Analysis Consortium (CPTAC) Dataset with Cloud Computing Reveals Abundant Post-Translational Modifications and Protein Sequence Variants

The Clinical Proteomic Tumor Analysis Consortium (CPTAC) has provided some of the most in-depth analyses of the phenotypes of human tumors ever constructed. Today, the majority of proteomic data analysis is still performed using software housed on desktop computers which limits the number of sequence variants and post-translational modifications that can be considered. The original CPTAC studies limited the search for PTMs to only samples that were chemically enriched for those modified peptides. Similarly, the only sequence variants considered were those with strong evidence at the exon or transcript level. In this multi-institutional collaborative reanalysis, we utilized unbiased protein databases containing millions of human sequence variants in conjunction with hundreds of common post-translational modifications. Using these tools, we identified tens of thousands of high-confidence PTMs and sequence variants. We identified 4132 phosphorylated peptides in nonenriched samples, 93% of which were confirmed in the samples which were chemically enriched for phosphopeptides. In addition, our results also cover 90% of the high-confidence variants reported by the original proteogenomics study, without the need for sample specific next-generation sequencing. Finally, we report fivefold more somatic and germline variants that have an independent evidence at the peptide level, including mutations in ERRB2 and BCAS1. In this reanalysis of CPTAC proteomic data with cloud computing, we present an openly available and searchable web resource of the highest-coverage proteomic profiling of human tumors described to date.

60 APPLIED LIFE SCIENCES↗