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At least 559 records · Page 31
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

E-Area Low Level Waste Generator Inventory Uncertainty Estimation

This report describes the method used to estimate the uncertainty and bias in the low-level waste inventory, as reported by Waste Generators, for waste disposed in the E-Area Low-Level Waste Facility at SRS. The waste cut uncertainty and bias is summed to calculate the current total uncertainty and bias in each disposal unit in the E-Area Low-Level Waste Facility. This information is used to estimate the future uncertainty and bias when all disposal units are closed. For most waste cuts, there are two areas of inventory uncertainty and bias: in the isotopic characterization of the waste stream and in the measurement of total waste cut activity. Waste stream characterization is accomplished through a combination of process knowledge and analytical measurements. This characterization is documented by a technical baseline that describes the relative quantity of each isotope present in the waste stream. The total activity of each individual waste cut is usually measured directly or is calculated through a ratio of activity per weight or activity per volume. The waste cut total activity is multiplied by the waste stream isotopic fraction to calculate the total isotopic activity present in the waste cut. The waste cut uncertainty and bias is calculated by analyzing the uncertainties and biases in the waste stream characterization and waste cut measurements and adding the uncertainties in quadrature and multiplying the reported isotopic activities by the bias factors. The current isotopic inventory, uncertainty, and bias of a disposal unit is the sum of the currently disposed individual waste cut isotopic activities, uncertainties, and biases. The future uncertainty and bias is estimated based on the average “worst-case” (largest) uncertainties and biases of currently closed and operational disposal units. This report details the method, data sources, and calculation techniques used to calculate these values. It also presents some of the difficulties in working with the reported data and gives examples of the calculations and analysis. The software used to carryout the analysis is included and the location of the complete individual analyses is given. After discussion with waste generators, examination of multiple waste characterization documents, and a review of SRS Manual 1S, the reported ELLWF radionuclide activities are clearly conservative and likely represent reasonable upper bounds for the true activities. However, quantifying the bias and uncertainty in each waste cut requires detailed analysis of the documentation for each waste cut measurement and waste stream characterization.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2021

Correcting the PFNS for more consistent fission modeling

For FY20, we had a deliverable to write a report detailing efforts to simultaneously evaluate both the prompt neutron multiplicity, $\overline{ν}$, and the prompt neutron fission neutron spectrum, PFNS, using CGMF. CGMF is the LANL-developed fission fragment decay code that consistently evaporates prompt neutrons and γ rays using the Hauser-Feshbach statistical theory of compound reactions. The decay begins by constructing the initial conditions of the fission fragments, then decaying each one from the excited state by neutrons and γ rays, conserving energy, momentum, spin, and parity in each step of the emission. The initial conditions of the fragments, along with the multiplicity, energy, and direction of each emitted neutron or γ ray, are recorded, allowing for the full reconstruction of the fission event. These event histories allow us to reconstruct average quantities, as well as correlations between observables, that can be compared with experimental or evaluated data. In that initial report, although there was already a favorable comparison between $\overline{ν}$ from CGMF, experiment, and the current ENDF/B-VIII.0 evaluation, we showed that there was still significant work to be done to improve the PFNS from CGMF. Historically, the PFNS is calculated too soft by Hauser-Feshbach fission models, and CGMF is no exception. The incorrect shape presents a significant challenge in fission modeling, including for our understanding of the fission process and for our ability to consistently calculate and predict a variety of prompt fission observables (such as fission fragment initial conditions, neutron and γ-ray multiplicities and energies, and the correlations between all observables). In our companion report, we detail our success in using CGMF to evaluate $\overline{ν}$. Although not included in the optimization explicitly, we also keep the initial conditions of the fission fragments physical, along with reproducing reasonably well the neutron multiplicity distribution. As we would expect from the sensitivities calculations from, the average neutron energies change very little from the $\overline{ν}$ optimization along with the PFNS (as will be shown in Sec. 2.6). The conclusion was that the global and statistical models would have to be investigated instead of just the fission fragment initial conditions (as is sufficient for $\overline{ν}$). This report details those efforts.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2023

DPE Techno-Economic Analyses

This National Energy Technology Laboratory (NETL) report presents the results of an extensive set of techno-economic analyses for several open-cycle coal fuel oxy-fired direct power extraction (DPE) concepts. These power cycles make use of a conducting plasma accelerated through a magnetic field to generate direct current directly without the need for moving parts. Similar to gas turbines, the efficiency of the power cycle increases with increasing working fluid temperature and typically, plasma temperatures are much higher than the inlet temperature of even the most advanced gas turbine available today, affording the opportunity for very high cycle efficiencies. Most of the study uses high-fidelity models to assess a coal-fueled oxy-combustion DPE system with an AUSC steam bottoming cycle. Two baseline configurations were explored, one with relatively conservative operating point parameters and another with relatively aggressive operating point parameters. Additional analysis on the high-fidelity models as well as reduced order models were performed to analyze the cost and performance potential more thoroughly for the baseline systems and to compare their performance to two alternate open-cycle DPE systems.

30 DIRECT ENERGY CONVERSION↗
DOE OSTI2026

Criteria for Retention of 3013 S1 Containers Based on Relative Risk and Expert Judgment

An evaluation was performed to assess the suitability of thirty-three 3013 containers proposed for retention. These containers have moisture levels greater than 0.08 wt.% – the S1 population. The remainder of the S1 population stored at SRS will be down blended and disposed of by the end of 2028. Based on field surveillance and shelf-life data available to date as well as informed technical judgment, no container is currently expected to fail in its 50-year storage period. However, corrosion risk varies across the S1 population. Relative risks were evaluated using predicted Consensus Scores and their 95% Upper Prediction Limits (UPLs). The predicted values are based on a statistical model of Consensus Score as a function of moisture, chloride, and whether the packaged material was electrorefining scrap packaged at Hanford. Consensus Score has been shown to be a useful indicator of corrosion potential, and the UPL captures uncertainty in the model predictions, providing a conservative indicator of corrosion potential. Using UPLs to determine relative risks, together with expert review, three containers were identified as not suitable for retention, and the remainder were determined to be suitable.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2021

Cost-Performance Trade-off in thermoelectric air conditioning system with graded and constant material properties

Thermoelectric (TE) air cooling is a solid-state technology that has the potential to replace conventional vapor compression-based air conditioning. In this paper, we present a detailed system-level modeling for thermoelectric air conditioning system with position-dependent (graded) and constant material properties. Strategies for design optimization of the system are provided in terms of cost-performance trade-off. Realistic convection heat transfer at both sides of the system are taken into account in our modeling. Here, the effects of convection heat transfer coefficients, air flowrate, and thermoelectric material properties are investigated with varying key parameters such as TE leg thickness, module fill factor, and input current. Both constant material properties and graded properties are considered for the TE materials, and they are compared in terms of the degree of cooling, coefficient of performance (COP), and power consumption. For graded materials, we employ one-dimensional finite element methods to solve the coupled electrical and thermal current equations with arbitrary profile of material properties varying with position along the TE legs. We find that graded materials can enhance the degree of cooling, but only at the expense of COP, compared to the case of constant property materials. With constant material properties of ZT = 1 and relatively low electric current, the power consumption of TE coolers can be lower than those of conventional air conditioners at an equivalent cooling capacity. Considering additional advantages such as demand-flexible operation, low noise, and high scalability, thermoelectric cooling could be a competitive technology for future air conditioning applications.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2020

Lattice QCD Inputs for nuclear double beta decay

Second order β -decay processes with and without neutrinos in the final state are key probes of nuclear physics and of the nature of neutrinos. Neutrinoful double- β decay is the rarest Standard Model process that has been observed and provides a unique test of the understanding of weak nuclear interactions. Observation of neutrinoless double- β decay would reveal that neutrinos are Majorana fermions and that lepton number conservation is violated in nature. While significant progress has been made in phenomenological approaches to understanding these processes, establishing a connection between these processes and the physics of the Standard Model and beyond is a critical task as it will provide input into the design and interpretation of future experiments. The strong-interaction contributions to double- β decay processes are non-perturbative and can only be addressed systematically through a combination of lattice Quantum Chromoodynamics (LQCD) and nuclear many-body calculations. In this review, current efforts to establish the LQCD connection are discussed for both neutrinoful and neutrinoless double- β decay. LQCD calculations of the hadronic contributions to the neutrinoful process $nn → ppe^-e^-\bar{v}_e\bar{v}_e$ and to various neutrinoless pionic transitions are reviewed, and the connections of these calculations to the phenomenology of double- β decay through the use of effective field theory (EFTs) is highlighted. At present, LQCD calculations are limited to small nuclear systems, and to pionic subsystems, and require matching to appropriate EFTs to have direct phenomenological impact. However, these calculations have already revealed qualitatively that there are terms in the EFTs that can only be constrained from double- β decay processes themselves or using inputs from LQCD. Finally, future prospects for direct calculations in larger nuclei are also discussed.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2023

Packaged Combined Heat and Power Technology Overview and Market Profile

Combined heat and power (CHP), sometimes referred to as cogeneration, is an efficient and clean approach to generating electric power and useful thermal energy onsite from a single fuel source, offering reliable and affordable energy services to businesses and institutions. Furthermore, CHP provides a cost effective opportunity to improve the environmental footprint and resilience of industrial and commercial facilities across the United States. CHP equipment can be custom-engineered or installed as a predesigned and assembled package. A packaged CHP system is a standardized, pre-engineered system that includes all equipment, piping, wiring, and ancillary components to deliver electricity and thermal energy to a host facility with minimal onsite engineering and design time. Packaged CHP systems can be shipped as single or multiple modules with standard interconnections (e.g., fuel; electrical; thermal—hot water, steam, and/or chilled water), which simplifies installation and reduces the costs associated with the project. Most containerized or single packaged CHP system offerings range from 10 kW to 3 MW in capacity. Packaged CHP systems are extending the operating, efficiency, and emissions benefits of CHP to nontraditional markets in commercial, institutional, multifamily, light manufacturing, government, and military applications. These markets tend to be served by smaller systems (less than 5 MW) that are conducive to pre-engineered packaging and/or modularization. Many of these sectors have limited CHP experience and technical resources to adequately evaluate, install, and maintain onsite CHP systems. The introduction of packaged CHP offerings from experienced CHP Packagers and Solution Providers has accelerated CHP adoption, lowered energy costs, reduced emissions, and strengthened energy resilience in these sectors. In 2019, the US Department of Energy (DOE) launched the Packaged CHP eCatalog to promote increased acceptance of efficient, cost-effective CHP in these applications. The Packaged CHP eCatalog is a web-based, searchable platform that hosts DOE-recognized packaged CHP systems with features designed to reduce economic and performance risks for designers, developers, owners, and facility operators interested in installing CHP. DOE established the Packaged CHP Accelerator at the same time to help launch and publicize the eCatalog, and to validate project performance, cost, and installation time of CHP packages across a variety of applications. Accelerator efforts documented installed cost reductions and installation time reductions of more than 20% for packaged CHP systems over 100 kW compared with custom-engineered systems. The Packaged CHP Accelerator and eCatalog established a peer-to-peer network connecting public and private sector partners including utilities, state energy offices, and energy efficiency program administrators interested in promoting cost-effective, efficient CHP systems, Packagers, and Solution Providers. Feedback from these partners, along with input from DOE’s CHP Technical Assistance Partnerships (CHP TAPs), was critical in understanding the current market for packaged CHP technologies, stimulating investment in these technologies, and guiding future directions for packaged CHP systems and their applications. This report provides background on packaged CHP systems, an overview of their benefits, a profile of current packaged CHP installations, and a summary of future market trends; this report is intended for facility owners, project developers, engineers, policymakers, and other stakeholders looking to increase the adoption of efficient, flexible, and resilient packaged CHP systems.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
DOE OSTI2024

Offshore Wind Market Report: 2024 Edition

The Offshore Wind Market Report: 2024 Edition provides detailed information on the U.S. and global offshore wind energy industries to inform policymakers, researchers, and analysts about technology, economic, and market trends. The report provides the status of more than 322 operating offshore wind energy projects in the global fleet through Dec. 31, 2023, as well as the broader global pipeline of projects in various development stages. To provide current information and discussion on the emerging offshore wind industry in the United States, this report tracks significant U.S. domestic progress and events from Jan. 1, 2023, to May 31, 2024.

17 WIND ENERGY↗
DOE OSTI2024

Next-Generation Desiccant-Based Gas Clothes Dryer Systems

The goal of the project is to develop an advanced gas clothes dryer system demonstrating significant improvements in fuel efficiency and drying performance compared to current gas clothes dryer technologies. The new system decouples latent and sensible loads to effectively utilize the latent heat associated with laundry moisture as an advantageous energy source. In other words, the system captures the waste latent heat from moisture produced during the fabric-drying process and reuses it to improve drying efficiency.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2025

Hydrological connectivity: a review and emerging strategies for integrating measurement, modeling, and management

This review synthesizes methods for measuring, modeling, and managing hydrologic connectivity, offering pathways to improve practices and address environmental challenges (e.g., climate change) and sustainability. As a key driver of water movement and nutrient cycling, hydrologic connectivity influences flood mitigation, water quality regulation, and biodiversity conservation. However, traditional field-based methods (e.g., dye tracing), indirect measurements (e.g., runoff analysis), and remote sensing techniques (e.g., InSAR) often struggle to capture the complexity of catchment-scale interactions. Similarly, modeling approaches—including process-based and percolation theory-based models, graph theory, and entropy-based metrics—face limitations in fully representing these interconnected processes. Both modeling and measurement techniques are constrained by inadequate spatial and temporal coverage, high data demands, computational complexity, and difficulties in representing subsurface connectivity. Subsequently, we critique current management practices that prioritize isolated variables (e.g., streamflow, sediment transport) over system-wide strategies and emphasize the need for adaptive, connectivity-based approaches in water resource planning and restoration. Moving forward, we highlight the importance of interdisciplinary collaboration, technological innovations (e.g., AI-driven modeling, real-time monitoring), and integrated frameworks to improve connectivity measurement, modeling, and adaptive management to restore fragmented hydrologic networks. This integrated approach sets the stage for transformative water resource management, fostering proactive policy development and stakeholder engagement.

Dwivedi, Dipankar↗
DOE OSTI2026

Impact of Space Heating Options on Electricity Rates and Affordability

Electricity prices have increased in many regions of the U.S., with a national average of 18 cents/kWh projected for 2026, up from 16 cents/kWh in 2020. While the increases can be attributed to a number of factors, increasing electricity use in an efficient and strategic manner - with energy efficient building envelope upgrades and high performance HVAC systems - has the potential to increase revenue for utilities without significantly increasing electricity demand, and therefore could help moderate rate increases. This effect has been studied for electric vehicle charging[1] and dual-fuel heat pumps in Minnesota[2]. Leveraging a recently developed system cost methodology and FERC data on utility revenue, spending, and profits, this poster will present the direction and relative magnitude of rate impacts for efficient space heating upgrades in utility balancing areas across the contiguous U.S., using current prices and showing how the rate impacts would evolve under future grid scenarios.

15 GEOTHERMAL ENERGY↗
DOE OSTI2022

Accelerated Materials Deployment in Advanced Nuclear Power Plants

The purpose of this report is to begin the development of a maximally efficient process for licensing and deploying new materials in Advanced Non-Light-Water Reactors (ANLWRs). Some new materials that are to be used in some new plants are seen as possibly introducing risks, because our understanding of those new materials’ behavior in the conditions generated by some novel plant designs is less complete than our understanding of the behavior of materials with long use histories in existing designs. In these cases, an approved code/standard or a code case to support the use of these materials in the novel design’s safety case may not exist for the regulator to utilize as part of the licensing determination. This circumstance creates the potential for an extremely long licensing process for new designs using new materials. The present strategy is to show how to manage these risks proactively, in such a way as to permit licensing decisions to be made in a timely manner, based on this risk management process. The present report outlines the gaps in the current codes to support deployment and use of novel materials and begins the development of the necessary risk management framework that is focused on the subject materials issues; it is based on risk-informed in-service surveillance practices, carried out in such a way as to compensate for current limitations in our state of knowledge. This development will enable licensing and deployment of the subject materials, conditional on the proactive surveillance process to be established. While this report is occasioned by limitations in our knowledge of certain materials issues that may arise in advanced designs, in-service surveillance is always done in order to compensate for a lack of knowledge: if we knew that components were not already failed and not trending toward failure, we would not perform surveillance, even in current-generation plants (except that prescriptive requirements would force us to do so). What is different about the surveillance program discussed here is that the issues are newer and the relevant experience base is less complete, so the surveillance presently contemplated may need to measure new things and/or measure them more often than has been traditional for surveillance coupons. The present report is devoted to the risk management framework and applies American Society of Mechanical Engineers Boiler and Pressure Vessel Code Section XI, Division [1] to establish the structure of a protocol for carrying out the necessary surveillance. These documents are generic: they do not tell us how often to surveille, or what to surveille, or what to measure, but rather how to determine those things, given certain technical inputs. The Regulatory Development R&D Program [2] is currently developing the companion supporting technical basis for the materials surveillance technology that, when completed and validated, can be used by owner/operator and NRC to implement a materials degradation management program for ANLWRs. This report also outlines salient points of discussion, positive potential outcomes, and potential concerns from industry and the USNRC. These aspects of the report intend to inform future work to develop a proposed technical process for adoption by the industry and endorsement by the USNRC to allow developers to propose a risk informed and conservative approach for the use of materials where operating experience/data and codes and standards may not exist for use of a novel material in an operating reactor environment. Additionally, such a technology could be leveraged to potentially reduce part of the upfront materials data requirements from ongoing long-term materials testing so that early action on license application could be undertaken by NRC, in parallel with the continuation of long-term data collection. This could accelerate the schedule for a first-of-a-kind ANLWR deployment or a nth-of-a-kind new materials insertion for established ANLWR designs.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2020

Validating Nuclear Data Uncertainties Obtained from a Statistical Analysis of Experimental Data with the “Physical Uncertainty Bounds” Method

Concerns within the nuclear data community led to substantial increases of Neutron Data Standards (NDS) uncertainties from its previous to the current version. For example, those associated with the NDS reference cross section 239 Pu(n,f) increased from 0.6–1.6% to 1.3–1.7% from 0.1–20 MeV. These cross sections, among others, were adopted, e.g., by ENDF/B-VII.1 (previous NDS) and ENDF/B-VIII.0 (current NDS). There has been a strong desire to be able to validate these increases based on objective criteria given their impact on our understanding of various application uncertainties. Here, the “Physical Uncertainty Bounds” method (PUBs) by Vaughan et al. is applied to validate evaluated uncertainties obtained by a statistical analysis of experimental data. We investigate with PUBs whether ENDF/B-VII.1 or ENDF/B-VIII.0 239 Pu(n,f) cross-section uncertainties are more realistic given the information content used for the actual evaluation. It is shown that the associated conservative (1.5–1.8%) and minimal realistic (1.1–1.3%) uncertainty bounds obtained by PUBs enclose ENDF/B-VIII.0 uncertainties and indicate that ENDF/B-VII.1 uncertainties are underestimated.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2023

Renewable Thermal Energy Systems: Modeling Developments and Future Directions (Report 3)

Increasing global energy consumption, increasing population, expansion of all types of produced goods and food, and the climate crisis have necessitated increasing the share of renewable heat in industry, which is vital for both decarbonization. The aim of this work is to evaluate current and prospective renewable heat technologies in stand-alone and hybrid configurations, together with their technical capabilities, performance, and cost. Renewable thermal energy systems (RTES) for buildings and industrial applications have been investigated using techno-economic analysis to determine their potential economic and environmental impacts.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2021

Parametrizations of the spin density matrix

Highlights: • Proposed two methods for parametrizing the SDM of spinning, unstable particles. • All non-negativity conditions fulfilled; adaptability to various constraints. • First method: based on a theorem; applicable in a simple and flexible way. • Second method: particularly suitable for especial conditions. • Applications: two of them interesting in the search for new physics. We propose for the spin density matrix two parametrizations which automatically fulfill the non-negativity conditions, without setting any bound on the parameters. The first one relies on a theorem, that we prove, and it is rather simple and easily adaptable to some specific reactions, where, for example, parity is conserved or angular momentum conservation entails selection rules. Moreover, in the case when the rank is less than the order of the density matrix, we show how to improve the fits to the data, either by implementing previous suggestions, or by elaborating an alternative method, for which we prove a second theorem. Our second parametrization is a variant of previous treatments, it appears suitable for some particular processes. Moreover, we discuss about the possibility of inferring the elements of the density matrix from the differential decay width. Last, we illustrate various examples of current interest, both in strong and weak decays; some of them may be helpful in the investigation of physics beyond the standard model.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2022

Structure of the pre-mRNA leakage 39-kDa protein reveals a single domain of integrated zf-C3HC and Rsm1 modules

In Saccharomyces cerevisiae, the pre-mRNA leakage 39-kDa protein (ScPml39) was reported to retain unspliced pre-mRNA prior to export through nuclear pore complexes (NPCs). Pml39 homologs outside the Saccharomycetaceae family are currently unknown, and mechanistic insight into Pml39 function is lacking. Here we determined the crystal structure of ScPml39 at 2.5 Å resolution to facilitate the discovery of orthologs beyond Saccharomycetaceae, e.g. in Schizosaccharomyces pombe or human. The crystal structure revealed integrated zf-C3HC and Rsm1 modules, which are tightly associated through a hydrophobic interface to form a single domain. Both zf-C3HC and Rsm1 modules belong to the Zn-containing BIR (Baculovirus IAP repeat)-like super family, with key residues of the canonical BIR domain being conserved. Features unique to the Pml39 modules refer to the spacing between the Zn-coordinating residues, giving rise to a substantially tilted helix αC in the zf-C3HC and Rsm1 modules, and an extra helix αAB' in the Rsm1 module. Conservation of key residues responsible for its distinct features identifies S. pombe Rsm1 and Homo sapiens NIPA/ZC3HC1 as structural orthologs of ScPml39. Based on the recent functional characterization of NIPA/ZC3HC1 as a scaffold protein that stabilizes the nuclear basket of the NPC, our data suggest an analogous function of ScPml39 in S. cerevisiae.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Disruption of a key ligand-H-bond network drives dissociative properties in vamorolone for Duchenne muscular dystrophy treatment

Duchenne muscular dystrophy is a genetic disorder that shows chronic and progressive damage to skeletal and cardiac muscle leading to premature death. Antiinflammatory corticosteroids targeting the glucocorticoid receptor (GR) are the current standard of care but drive adverse side effects such as deleterious bone loss. Through subtle modification to a steroidal backbone, a recently developed drug, vamorolone, appears to preserve beneficial efficacy but with significantly reduced side effects. We use combined structural, biophysical, and biochemical approaches to show that loss of a receptor-ligand hydrogen bond drives these remarkable therapeutic effects. Moreover, vamorolone uniformly weakens coactivator associations but not corepressor associations, implicating partial agonism as the main driver of its dissociative properties. Additionally, we identify a critical and evolutionarily conserved intramolecular network connecting the ligand to the coregulator binding surface. Interruption of this allosteric network by vamorolone selectively reduces GR-driven transactivation while leaving transrepression intact. Our results establish a mechanistic understanding of how vamorolone reduces side effects, guiding the future design of partial agonists as selective GR modulators with an improved therapeutic index.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Gaia: An AI-enabled genomic context–aware platform for protein sequence annotation

Protein sequence similarity search is fundamental to biology research, but current methods are typically not able to consider crucial genomic context information indicative of protein function, especially in microbial systems. Here, we present Gaia (Genomic AI Annotator), a sequence annotation platform that enables rapid, context-aware protein sequence search across genomic datasets. Gaia leverages gLM2, a mixed-modality genomic language model trained on both amino acid sequences and their genomic neighborhoods to generate embeddings that integrate sequence-structure-context information. This approach allows for the identification of functionally and/or evolutionarily related genes that are found in conserved genomic contexts, which may be missed by traditional sequence- or structure-based search alone. Gaia enables real-time search of a curated database comprising more than 85 million protein clusters from 131,744 microbial genomes. We compare the homolog retrieval performance of Gaia search against other embedding and alignment-based approaches. We provide Gaia as a web-based, freely available tool.

Jha, Nishant↗