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At least 559 records · Page 31

Memory-Aware External Facelist Calculation: A Data-Parallel Atomic Hash Counting Approach

Unstructured volumetric meshes serve as fundamental data representations in various scientific simulations and analyses. They play a crucial role in representing complex computational domains and are essential for important numerical techniques, such as finite element analysis. Whenever such a mesh is read from a file, streamed in-situ, or generated by algorithms, scientific visualization libraries rely on calculating the external surface of a geometry, named “external facelist”, to produce a polygonal mesh for rendering. Consequently, external facelist calculation has become one of the most widely used algorithms in the scientific visualization domain, necessitating optimal performance. In this paper, we explore relevant work on external facelist calculation algorithms in two common visualization libraries, VTK and Viskores, assess their performance and memory constraints, and introduce a novel memory-aware external facelist calculation algorithm employing an atomic hash counting approach. This algorithm fully leverages Viskores' data-parallel primitive operations, facilitating its execution across diverse many-core architectures. Our algorithm features the lowest memory footprint on the GPU and the second-lowest on the CPU among all evaluated methods, and it also delivers the fastest performance on both CPU and GPU. It has been made available under an open-source license in the VTK and Viskores visualization systems.

Tsalikis, Spiros [Kitware] (ORCID:0000000151137195↗

Activation and Depletion with Attila [Slides]

This presentation covers the activation, depletion, and activation source synthesis capabilities of the Attila deterministic solver using the Attila GUI.

97 MATHEMATICS AND COMPUTING↗

Barotropic tides in MPAS-Ocean (E3SM V2): impact of ice shelf cavities

Abstract. Oceanic tides are seldom represented in Earth system models (ESMs) owing to the need for high horizontal resolution to accurately represent the associated barotropic waves close to coasts. This paper presents results of tides implemented in the Model for Prediction Across Scales–Ocean or MPAS-Ocean, which is the ocean component within the U.S. Department of Energy developed Energy Exascale Earth System Model (E3SM). MPAS-Ocean circumvents the limitation of low resolution using unstructured global meshing. We are at this stage simulating the largest semidiurnal (M2, S2, N2) and diurnal (K1, O1) tidal constituents in a single-layer version of MPAS-O. First, we show that the tidal constituents calculated using MPAS-Ocean closely agree with the results of the global tidal prediction model TPXO8 when suitably tuned topographic wave drag and bottom drag coefficients are employed. Thereafter, we present the sensitivity of global tidal evolution due to the presence of Antarctic ice shelf cavities. The effect of ice shelves on the amplitude and phase of tidal constituents are presented. Lower values of complex errors (with respect to TPXO8 results) for the M2 tidal constituents are observed when the ice shelf is added in the simulations, with particularly strong improvement in the Southern Ocean. Our work points towards future research with varying Antarctic ice shelf geometries and sea ice coupling that might lead to better comparison and prediction of tides and thus better prediction of sea-level rise and also the future climate variability.

58 GEOSCIENCES↗

The ocean model for E3SM global applications: Omega version 0.1.0 – a new high-performance computing code for exascale architectures

This paper introduces Omega, the Ocean Model for E3SM Global Applications. Omega is a new ocean model designed to run efficiently on high performance computing (HPC) platforms, including exascale heterogeneous architectures with accelerators, such as Graphics Processing Units (GPUs). Omega is written in C and uses the Kokkos performance portability library. These were chosen because they are well-supported and will help future-proof Omega for upcoming HPC architectures. Omega will eventually replace the Model for Prediction Across Scales-Ocean (MPAS-Ocean) in the US Department of Energy's (DOE's) Energy Exascale Earth System Model (E3SM). Omega runs on unstructured horizontal meshes with variable-resolution capability and implements the same horizontal discretization as MPAS-Ocean. This work documents the design and performance of Omega Version 0.1.0 (Omega-V0), which solves the shallow water equations with passive tracers and is the first step towards the full primitive equation ocean model. On Central Processing Units (CPUs), Omega-V0 is 1.4 times faster than MPAS-Ocean with the same configuration. Omega-V0 is more efficient on GPUs than CPUs on a per-watt basis – by a factor of 5.3 on Frontier and 3.6 on Aurora, two of the world's fastest exascale computers.

54 ENVIRONMENTAL SCIENCES↗

An adaptive finite element scheme for the Euler and Navier-Stokes equations

The implementation of two explicit finite element schemes for the solution of the compressible Euler and Navier-Stokes equations is presented. The schemes can be employed with general unstructured triangular meshes in two dimensions. Either scheme can therefore be used as the basic solver in a solution adaptive mesh procedure in a direct manner. The particular adaptive approach which is advocated here is intended for the solution of steady state problems only and involves an adaptive regeneration of the grid at prescribed stages during the false transient. The grid regeneration is accomplished by a mesh generator which has the capability of generating triangular grids over computational domains of arbitrary shape. The procedure is illustrated by solving transonic flows over multi-airfoil configurations and high speed flows, involving shock interactions, past circular cylinders.

Morgan, K.↗

A Navier-Stokes solver for high speed equilibrium flows and application to blunt bodies

This paper presents a finite element method for the solution of Navier-Stokes equations with the assumption of thermodynamic and chemical equilibrium. The method employs an upwind finite element technique with an implicit time-marching scheme for the solution, and uses an adaptively generated unstructured triangular mesh with several layers of quadrilateral elements near solid walls. The complexity associated with the assumption that the flow is in equilibrium is treated consistently, and the inviscid flux Jacobian matrices are derived. Several problems involving inviscid and viscous hypersonic flow past blunt are solved. Results are compared with other numerical results and experimental data, and generally good agreement is observed.

Prabhu, Ramadas K.↗

The upwind control volume scheme for unstructured triangular grids

A new algorithm for the numerical solution of the Euler equations is presented. This algorithm is particularly suited to the use of unstructured triangular meshes, allowing geometric flexibility. Solutions are second-order accurate in the steady state. Implementation of the algorithm requires minimal grid connectivity information, resulting in modest storage requirements, and should enhance the implementation of the scheme on massively parallel computers. A novel form of upwind differencing is developed, and is shown to yield sharp resolution of shocks. Two new artificial viscosity models are introduced that enhance the performance of the new scheme. Numerical results for transonic airfoil flows are presented, which demonstrate the performance of the algorithm.

Giles, Michael↗

Three dimensional unstructured multigrid for the Euler equations

The three dimensional Euler equations are solved on unstructured tetrahedral meshes using a multigrid strategy. The driving algorithm consists of an explicit vertex-based finite element scheme, which employs an edge-based data structure to assemble the residuals. The multigrid approach employs a sequence of independently generated coarse and fine meshes to accelerate the convergence to steady-state of the fine grid solution. Variables, residuals and corrections are passed back and forth between the various grids of the sequence using linear interpolation. The addresses and weights for interpolation are determined in a preprocessing stage using linear interpolation. The addresses and weights for interpolation are determined in a preprocessing stage using an efficient graph traversal algorithm. The preprocessing operation is shown to require a negligible fraction of the CPU time required by the overall solution procedure, while gains in overall solution efficiencies greater than an order of magnitude are demonstrated on meshes containing up to 350,000 vertices. Solutions using globally regenerated fine meshes as well as adaptively refined meshes are given.

Mavriplis, D. J.↗

Three dimensional unstructured multigrid for the Euler equations

The three-dimensional Euler equations are solved on unstructured tetrahedral meshes using a multigrid strategy. The driving algorithm consists of an explicit vertex-based finite-element scheme, which employs an edge-based data-structure to assemble the residuals. The multigrid approach employs a sequence of independently generated coarse and fine meshes to accelerate the convergence to steady-state of the fine grid solution. Variables, residuals and corrections are passed back and forth between the various grids of the sequence using linear interpolation. The addresses and weights for interpolation are determined in a preprocessing stage using an efficient graph traversal algorithm. The preprocessing operation is shown to require a negligible fraction of the CPU time required by the overall solution procedure, while gains in overall solution efficiencies greater than an order of magnitude are demonstrated on meshes containing up to 350,000 vertices. Solutions using globally regenerated fine meshes as well as adaptively refined meshes are given.

Mavriplis, D. J.↗

Two-dimensional unstructured triangular grid generation

The capability of generating 2-D unstructured triangular meshes about arbitrary geometries is demonstrated. This work uses a distribution of boundary points and triangulates the computational domain using a Delaunay triangulation algorithm. Typically, initial cells are added based on cell aspect ratios or cell areas. A resulting mesh can then be used along with the connectivity of the cells to solve either a Euler or Navier-Stokes flow problem.

Jorgenson, Philip C. E.↗

Implicit upwind-Euler solution algorithms for unstructured-grid applications

The development of implicit upwind algorithms for the solution of the three-dimensional, time-dependent Euler equations on unstructured tetrahedral meshes is described. The implicit temporal discretization involves either a two-sweep Gauss-Seide relaxation procedure, a two-sweep Point-Jacobi relaxation procedure, or a single-sweep Point-Implicit procedure; the upwind spatial discretization is based on the flux-difference splitting of Roe. Detailed descriptions of the three implicit solution algorithms are given, and calculations for the Boeing 747 transport configuration are presented to demonstrate the algorithms. Advantages and disadvantages of the implicit algorithms are discussed. A steady-state solution for the 747 configuration, obtained at transonic flow conditions using a mesh of over 100,000 cells, required less than one hour of CPU time on a Cray-2 computer, thus demonstrating the speed and robustness of the general capability.

Batina, John T.↗

Computational/experimental analysis of three low sonic boom configurations with design modifications

The Euler code, designated AIRPLANE, which uses an unstructured tetrahedral mesh was used to compute near-field sonic boom pressure signatures on three modern low sonic boom configurations: the Mach 2, Mach 3, and Haglund models. The TEAM code which uses a multi-zoned structured grid was used to calculate pressure signatures for the Mach 2 model. The computational pressure signatures for the Mach 2 and Mach 3 models are compared with recent experimental data. The computed pressure signatures were extracted at distances less than one body length below the configuration and extrapolated to the experimental distance. The Mach 2 model was found to have larger overpressures off-ground-track than on-ground-track in both computational and experimental results. The correlations with the experiment were acceptable where the signatures were not contaminated by instrumentation and model-support hardware. AIRPLANE was used to study selected modifications to improve the overpressures of the Mach 2 model.

Cliff, Susan E.↗

Three-dimensional unstructured grid Euler method applied to turbine blades

Flow through a turbine annular cascade is calculated using a three-dimensional Euler method based on unstructured tetrahedral meshes. The equations are integrated in time using an explicit Runge-Kutta time-stepping scheme. The inviscid flux terms are discretized using a cell-centered finite-volume formulation with upwind flux-difference splitting. The tetrahedral meshes around the turbine blade are generated using an advancing-front technique with forced geometric periodicity between the blades. Good agreement is obtained between the present calculation and the experiment for both surface pressure distribution and flow behavior in the passage between the blades, demonstrating the capability of the present methodology for turbomachinery flow applications.

Kwon, Oh J.↗

A new procedure for dynamic adaption of three-dimensional unstructured grids

A new procedure is presented for the simultaneous coarsening and refinement of three-dimensional unstructured tetrahedral meshes. This algorithm allows for localized grid adaption that is used to capture aerodynamic flow features such as vortices and shock waves in helicopter flowfield simulations. The mesh-adaption algorithm is implemented in the C programming language and uses a data structure consisting of a series of dynamically-allocated linked lists. These lists allow the mesh connectivity to be rapidly reconstructed when individual mesh points are added and/or deleted. The algorithm allows the mesh to change in an anisotropic manner in order to efficiently resolve directional flow features. The procedure has been successfully implemented on a single processor of a Cray Y-MP computer. Two sample cases are presented involving three-dimensional transonic flow. Computed results show good agreement with conventional structured-grid solutions for the Euler equations.

Biswas, Rupak↗

An assessment of the adaptive unstructured tetrahedral grid, Euler Flow Solver Code FELISA

A three-dimensional solution-adaptive Euler flow solver for unstructured tetrahedral meshes is assessed, and the accuracy and efficiency of the method for predicting sonic boom pressure signatures about simple generic models are demonstrated. Comparison of computational and wind tunnel data and enhancement of numerical solutions by means of grid adaptivity are discussed. The mesh generation is based on the advancing front technique. The FELISA code consists of two solvers, the Taylor-Galerkin and the Runge-Kutta-Galerkin schemes, both of which are spacially discretized by the usual Galerkin weighted residual finite-element methods but with different explicit time-marching schemes to steady state. The solution-adaptive grid procedure is based on either remeshing or mesh refinement techniques. An alternative geometry adaptive procedure is also incorporated.

Djomehri, M. Jahed↗

Essentially nonoscillatory (ENO) reconstructions via extrapolation

In this paper, the algorithm for determining the stencil of a one-dimensional Essentially Nonoscillatory (ENO) reconstruction scheme on a uniform grid is reinterpreted as being based on extrapolation. This view leads to another extension of ENO reconstruction schemes to two-dimensional unstructured triangular meshes. The key idea here is to select several cells of the stencil in one step based on extrapolation rather than one cell at a time. Numerical experiments confirm that the new scheme yields sharp nonoscillatory reconstructions and that it is about five times faster than previous schemes.

Suresh, Ambady↗

Numerical study to assess sulfur hexafluoride as a medium for testing multielement airfoils

A methodology is described for computing viscous flows of air and sulfur hexafluoride (SF6). The basis is an existing flow solver that calculates turbulent flows in two dimensions on unstructured triangular meshes. The solver has been modified to incorporate the thermodynamic model for SF6 and used to calculate the viscous flow over two multielement airfoils that have been tested in a wind tunnel with air as the test medium. Flows of both air and SF6 at a free-stream Mach number of 0.2 and a Reynolds number of 9 x 10(exp 6) are computed for a range of angles of attack corresponding to the wind-tunnel test. The computations are used to investigate the suitability of SF6 as a test medium in wind tunnels and are a follow-on to previous computations for single-element airfoils. Surface-pressure, lift, and drag coefficients are compared with experimental data. The effects of heavy gas on the details of the flow are investigated based on computed boundary-layer and skin-friction data. In general, the predictions in SF6 vary little from those in air. Within the limitations of the computational method, the results presented are sufficiently encouraging to warrant further experiments.

Bonhaus, Daryl L.↗