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At least 559 records · Page 31

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DOE OSTI2022

Mass spectrometry-based technologies for probing the 3D world of plant proteins

Abstract Over the past two decades, mass spectrometric (MS)-based proteomics technologies have facilitated the study of signaling pathways throughout biology. Nowhere is this needed more than in plants, where an evolutionary history of genome duplications has resulted in large gene families involved in posttranslational modifications and regulatory pathways. For example, at least 5% of the Arabidopsis thaliana genome (ca. 1,200 genes) encodes protein kinases and protein phosphatases that regulate nearly all aspects of plant growth and development. MS-based technologies that quantify covalent changes in the side-chain of amino acids are critically important, but they only address one piece of the puzzle. A more crucially important mechanistic question is how noncovalent interactions—which are more difficult to study—dynamically regulate the proteome’s 3D structure. The advent of improvements in protein 3D technologies such as cryo-electron microscopy, nuclear magnetic resonance, and X-ray crystallography has allowed considerable progress to be made at this level, but these methods are typically limited to analyzing proteins, which can be expressed and purified in milligram quantities. Newly emerging MS-based technologies have recently been developed for studying the 3D structure of proteins. Importantly, these methods do not require protein samples to be purified and require smaller amounts of sample, opening the wider proteome for structural analysis in complex mixtures, crude lysates, and even in intact cells. These MS-based methods include covalent labeling, crosslinking, thermal proteome profiling, and limited proteolysis, all of which can be leveraged by established MS workflows, as well as newly emerging methods capable of analyzing intact macromolecules and the complexes they form. In this review, we discuss these recent innovations in MS-based “structural” proteomics to provide readers with an understanding of the opportunities they offer and the remaining challenges for understanding the molecular underpinnings of plant structure and function.

Plant Sciences↗

DOE OSTI2023

SIMS CHARACTERIZATION OF NITROGEN DOPING OF LCLS-II-HE PRODUCTION CAVITIES

The thermal diffusion of nitrogen into the surface of niobium has been shown to yield superior low-loss SRF performance. An effective solution was identified and promptly employed in the production of cryomodules for LCLS-II. With added experience and R&D, a modified process was chosen for use in the upgrade for LCLS-II-HE. Largely motivated by this circumstance, supporting research has significantly refined the technique for making calibrated secondary ion mass spectrometry (SIMS) measurements of the N concentration depth profiles produced by production processes. Standardized reference samples were included with four HE production cavities in their N-doping furnace runs. We report the calibrated dynamic SIMS depth profiles of N, C, and O for these samples, together with the cryogenic acceptance test performance of the associated cavities. Interpretation and comparison with similar samples acquired in other furnaces highlights the importance of intentional process quality control of furnace conditions.

Reece, Charles↗

DOE OSTI2023

SIMS CHARACTERIZATION OF NITROGEN DOPING OF LCLS-II-HE PRODUCTION CAVITIES

Reece, Charles↗

NASA NTRS1973

Fracture trends identified by ERTS-1 imagery in Utah and Nevada

The author has identified the following significant results. In the Utah-Nevada area, linear structural trends recorded on ERTS-1 imagery conform in part to previously recognized structures. In addition, the ERTS-1 imagery reveals cryptic structures not previously identified and not readily apparent in other imagery. These structures are illustrated by prominent east-west trending structures which appear to be concentrated in pre-volcanic rocks. This suggests that the structures are older than many of those with other trends which are equally prominent in volcanic and non-volcanic terrain. Since the older east-west structures may have controlled early Tertiary emplacement of magma or the ascent of mineralizing fluids, their recognition is important in minerial exploration. Soil-gas sampling and analysis for mercury content is being continued over structures, and projected trends of buried structures which appear, from studies of ERTS-1 imagery, to be favorable to mineralization. Comparison of ERTS-1 and Skylab imagery indicated that ERTS-1 imagery records more previously unrecognized linear structures than the Skylab imagery. In differentiating and identifying different rock types, the Skylab imagery appears to be more effective.

Jensen, M. L.↗

NASA NTRS1974

Sensitivity analysis of torsional vibration characteristics of helicopter rotor blades. Part 2: Aerodynamics and sensitivity analysis

A theoretical investigation of dynamic response characteristics of rotor blades was carried out with special emphasis on torsional degrees-of-freedom. Coupled equations of motion for flapwise bending and torsion were formulated at varying azimuth positions for rotor blades with noncollinear aerodynamic, elastic and mass axes. Both structural and aerodynamic mass, damping and stiffness coefficients were included. The variations of a sample blade at different flight conditions were investigated from these equations. The obtained numerical results were illustrated. The sensitivity of overall blade vibration characteristics to torsional oscillations was also investigated from the equations of motion for the sample blade. The illustrated results show the importance of torsional degrees-of-freedom in rotor blade analysis. Various possibilities of improving the overall response by tuning blade geometric, structural and aerodynamic characteristics are discussed.

Bratanow, T.↗

NASA NTRS1978

Mars - Remote spectral identification of H2O frost and mineral hydrate

A reflectance spectrum (0.62-2.6 microns) of Mars (integral disk) is obtained using a newly developed IR spectrometer at the 2.25 m telescope on Mauna Kea, Hawaii. Details of the instrument, observations, and data reduction are presented. Several distinct absorption features are evident that were apparently caused by H2O, but the positions and intensities of the features are quite unusual. In summary, the regolith is probably not as desiccated and dehydrated as the full disk reflectance spectrum and Viking soil analyses would suggest. The surface materials become desiccated and dehydrated as a result of solar UV effects and because of the relative adsorption and desorption rates during the strong diurnal cycling. There may be significant amounts of H2O at depth, and in the Solis Lacus region the H2O reservoir may extend to within a few centimeters of the surface. The Solis Lacus region may therefore be an important target for future Mars landing or sample return mission.

Huguenin, R. L.↗

NASA NTRS1982

Xenon diffusion following ion implantation into feldspar - Dependence on implantation dose

The diffusion properties of xenon implanted into feldspar, a major mineral in meteorites and lunar samples, are investigated in light of the importance of xenon diffusion in the interpretation of early solar system chronologies and the retention time of solar-wind-implanted Xe. Known doses of Xe ions were implanted at an energy of 200 keV into single-crystal plagioclase targets, and depth profiles were measured by alpha particle backscattering before and after annealing for one hour at 900 or 1000 C. The fraction of Xe retained following annealing is found to be strongly dependent on implantation dose, being greatest at a dose of 3 x 10 to the 15th ions/sq cm and decreasing at higher and lower doses. Xe retention is also observed to be unaffected by two-step anneals, or by implantation with He or Ar. Three models of the dose-dependent diffusion properties are considered, including epitaxial crystal regrowth during annealing controlled by the extent of radiation damage, the creation of trapping sites by radiation damage, and the inhibition of recrystallization by Xe during annealing

Melcher, C. L.↗

NASA NTRS1985

Performance evaluation and geologic utility of LANDSAT-4 thematic mapper data

The overall objective of the project was to evaluate LANDSAT-4 Thematic Mapper (TM) data in the context of geologic applications. This involved a quantitative assessment of the data quality including the spatial and spectral characteristics realized by the instrument. Three test sites were selected for the study: (1) Silver Bell, Arizona; (2) Death Valley, California; and (3) Wind River/Bighorn Basin area, Wyoming. Conclusions include: (1) Artificial and natural targets can be used to atmospherically calibrate TM data and investigate scanner radiometry, atmospheric parameters, and construction of atmospheric Modulation Transfer Functions (MTF's), (2) No significant radiometric degradation occurs in TM data as a result of SCROUNGE processing; however, the data exhibit narrow digital number (DN) distributiosn suggesting that the configuration of the instrument is not optimal for each science applications, (30 Increased spatial resolution, 1:24,000 enlargement capability, and good geometric fidelity of TM data allow accurate photogeologic/geomorphic mapping, including relative age dating of alluvial fans, measurement of structural and bedding attitudes, and construction of such things as structural cross sections and stratigraphic columns. (4) TM bands 5 and 7 are particularly useful for geologic applications because they span a region of the spectrum not previously sampled by multispectral scanner data and are important for characterizing clay and carbonate materials.

Paylor, E. D.↗

NASA NTRS1985

The crystallization of small particles and droplets

A general expression is derived for the volume fraction of material crystallized as a function of time for the situation where boundary effects may be important, and it is applied to a sample consisting of a monodisperse array of small particles. It is assumed that crystallization occurs via homogeneous nucleation followed by crystal growth. The crystallization rate is shown to be controlled by a single dimensionless parameter, beta. Beta exp 1/4 is a dimensionless particle radius which tends to be small when the growth rate is large or when the nucleation rate is small. When beta is large, the general expression for the volume fraction transformed reduces to the standard expression valid for bulk samples. When beta is small, it reduces to the formula used to compute the volume fraction crystallized in droplet undercooling experiments. Hence, the present results are pertinent for the interpretation of some droplet undercooling experiments as well as isothermal DSC and DTA experiments.

Weinberg, M. C.↗

NASA NTRS1986

How pristine are cometary nuclei?

The claim that comets are the best obtainable source of original solar nebula material is assessed. To fully interpret the cosmochemical record contained in the comet nuclei, modifications since their formation in the primordial solar nebula, 4.5 Gyr ago must be considered. Possible processes include: comminution and collisions during formation; heating by short-lived radionuclides; accretion of interstellar gases; erosion by interstellar dust; polymerization by galactic cosmic rays; and heating and thermal evolution when the comets return to the planetary region. Consideration of these processes has important implications for where and how a sample is obtained on the cometary nucleus, and how it is preserved during the return to Earth. The possible dynamical history of short-period comets is discussed.

Weissman, Paul R.↗

NASA NTRS1988

Experimental simulations of oxidizing conditions and organic decomposition on the surface of Mars

One important scientific objective of a Mars Rover Sample Return mission would be to look for traces of living and extinct life on Mars. An instrument to search for organic carbon may be the simplest instrument that could screen samples which are interesting from a biological point of view. An experimental program is described which would help to understand the nature of the oxidizing soil on Mars and the mechanism responsible for organic degradation on the Martian surface. This is approached by lab simulations of the actual conditions that occur on Mars, particularly the oxidant production by atmospheric photochemistry, and the combined effects of UV light and oxidants in decomposing organic compounds. The results will be used to formulate models of the photochemistry of the atmospheric, the atmosphere-soil interaction, and the diffusion of reactive compounds into the soils. This information will provide insights and constraints on the design of a sampling strategy to search for organic compounds on Mars.

Stoker, C. R.↗

NASA NTRS1988

A laboratory verification sensor

The use of a variant of the Hartmann test is described to sense the coalignment of the 36 primary mirror segments of the Keck 10-meter Telescope. The Shack-Hartmann alignment camera is a surface-tilt-error-sensing device, operable with high sensitivity over a wide range of tilt errors. An interferometer, on the other hand, is a surface-height-error-sensing device. In general, if the surface height error exceeds a few wavelengths of the incident illumination, an interferogram is difficult to interpret and loses utility. The Shack-Hartmann aligment camera is, therefore, likely to be attractive as a development tool for segmented mirror telescopes, particularly at early stages of development in which the surface quality of developmental segments may be too poor to justify interferometric testing. The constraints are examined which would define the first-order properties of a Shack-Hartmann alignment camera and the precision and range of measurement one could expect to achieve with it are investigated. Fundamental constraints do arise, however, from consideration of geometrical imaging, diffraction, and the density of sampling of images at the detector array. Geometrical imagining determines the linear size of the image, and depends on the primary mirror diameter and the f-number of a lenslet. Diffraction is another constraint; it depends on the lenslet aperture. Finally, the sampling density at the detector array is important since the number of pixels in the image determines how accurately the centroid of the image can be measured. When these factors are considered under realistic assumptions it is apparent that the first order design of a Shack-Hartmann alignment camera is completely determined by the first-order constraints considered, and that in the case of a 20-meter telescope with seeing-limited imaging, such a camera, used with a suitable detector array, will achieve useful precision.

Vaughan, Arthur H.↗

NASA NTRS1990

N-body models

The experimental discovery of an overstability in the central regions of galaxies is briefly discussed, and numerical methods for integrating orbits are briefly addressed. The overstability manifests itself as a growing amplitude in the orbit of a galaxy's nucleus about its mass centroid. This finding may complicate studies of the topological properties of orbits and studies of the bifurcation structure of orbits. A sample problem is used to illustrate the importance of a Liouville theorem in N-body calculations.

Miller, R. H.↗

NASA NTRS1993

Fuel injector design for high temperature aircraft engine

The objective of the Innovative High Temperature Aircraft Engine Fuel Nozzle Program was to design and evaluate a nozzle capable of operating at a combustor inlet air temperature of 1600 F (1144 K) and a fuel temperature of 350 F (450 K). The nozzle was designed to meet the same performance requirements and fit within the size envelope of a current production dual orifice fuel nozzle. The design approach was to use improved thermal protection and fuel passage geometry in combination with fuel passage surface treatment to minimize coking at these extreme fuel and air temperatures. Heat transfer models of several fuel injector concepts were used to optimize the thermal protection, while sample tube coking tests were run to evaluate the effect of surface finish, coatings and tube material on the coking rate. Based on heat transfer analysis, additional air gaps, reduced fuel passage flow area and use of ceramic tip components reduced local fuel wetted wall temperatures by more than 200 F (100 K) when compared to a current production fuel nozzle. Sample tube coking test results showed the importance of surface finish on the fuel coking rate. Therefore, a one micro-inch (0.025 micron) roughness was specified for all fuel passage surfaces. A novel flow divider valve in the tip was also employed to reduce weight, allow room for additional thermal protection, and provide back pressure to reduce the risk of fuel vaporization. The fuel nozzle was fabricated and evaluated in a series of high temperature coking tests. Initial results of these tests indicate that thermal protection and surface treatments were partially successful in preventing nozzle fouling, but additional refinement of the internal flowpath is needed to prevent buildup of coke particles that partially blocked the spin slots which meter the nozzle fuel flow.

R. W. Stickles↗

NASA NTRS1994

Rotational modulation and flares on RS Canum Venaticorum and BY Draconis stars. 18: Coordinated VLA, ROSAT, and IUE observations of RS CVn binaries

As part of a coordinated program of multi-wavelength observations of RS CVn close binary systems, we observed 15 systems with the Very Large Array (VLA) and 10 systems with IUE, simultaneously or nearly simultaneously with the ROSAT All Sky Survey observations of these stars. Of the 22 systems observed with ROSAT, three were observed both by IUE and the VLA. Radio observations were made at 3.6, 6 and 20 cm. Of the 15 observed RS CVn systems, we detected 11 with greater than 4 sigma confidence at one or more wavelengths. The IUE observations were made within the RIASS (ROSAT-IUE All Sky Survey) program. We present the results of the VLA observations, along with the corresponding subsets of the ROSAT Position Sensitive Proportional Counter (PSPC) X-ray and Wide Field Camera (WFC) XUV survey, and RIASS IUE observations. We obtained an extended VLA/IUE/ROSAT simultaneous coverage of one system, TY Pyx, covering more than one orbital period. These observations reveal that the quiescent radio flux of TY Pyx is relatively constant over time scales of up to 7 hours, but that it did change by a factor of 3 over 24 hours, probably due to a flare on 1990 Nov. 12. The UV, XUV and X-ray fluxes do not show large day-to-day or phase-related variability. The observation of the decay phase of a radio flare on EI Eri, with no accompanying X-ray or XUV flare, suggests that the lack of a strong correlation between X-ray and radio flares previously noted for dMe flare stars holds for RS CVn systems as well. We suggest that the radio flare may have been due to a coherent emission process such as electron cyclotron emission. The simultaneous measurements presented here provide a unique test of the general correlation between radio and soft X-ray luminosities, L(sub radio) approximately L(sub x exp m) (Drake et al. 1989) with a power-law slope close to unity, which was previously derived using data obtained years apart. Our derived slopes are consistent with and thus support the general correlations between coronal and chromospheric/transition region emissions previously derived from nonsimultaneous measurements of a much larger sample of these variable sources. However, the importance of simultaneous measurements for accurate energy balance calculations is stressed.

Fox, David C.↗

NASA NTRS1994

Chemical transitions for interstellar C2 and CN in cloud envelopes

Observations were made of absorption from CH, C2, and CN toward moderately reddened stars in Sco, OB2, Ceo OB3, and Taurus/Auriga. For these directions, most of the reddening is associated with a single cloud complex, for example, the rho Ophiuchus molecular cloud, and as a result, the observations probe moderately dense material. When combined with avaliable data for nearby directions, the survey provides the basis for a comprehensive analysis of the chemistry for these species. The chemical transitions affecting C2 and CN in cloud envelopes were analyzed. The depth into a cloud at which a transition takes place was characterized by tau(sub uv), the grain optical depth at 1000 A. One transition at tau(sub uv) approx. = 2, which arises from, the conversion of C(+) into CO, affects the chemistries for both molecules because of the key role this ion plays. A second one involving production terms in the CN chemistry occurs at tau(sub uv) of approx. = 3; neutral reactions which C2 and CH is more important at larger values for tau(sub uv). The transition from photodissociation to chemical destruction takes place at tau(sub uv) approx. = 4.5 for C2 and CN. The observational data for stars in Sco OB2, Cep OB3, and Taurus/Auriga were studied with chemical rate equations containing the most important production and destruction mechanisms. Because the sample of stars in Sco OB2 includes sight lines with A(sub v) ranging from 1-4 mag, sight lines dominated by photochemistry could be analyzed separately from those controlled by gas-phase destruction. The analysis yielded values for two poorly known rate constants for reactions involved in the production of CN; the reactions are C2 + N yields CN + C and C(+) + NH yields all products. The other directions were analyzed with the inferred values. The predicted column densities for C2 and CN agree with the observed values to better than 50%, and in most instances 20%. When combining the estimates for density and temperature derived from chemical modeling and molecular excitation for a specific cloud, such as the rho Ophiuchus molecular cloud, the portion of the cloud envelope probed by C2 and CN absorption was found to be in pressure equilibrium.

Federman, S. R.↗

NASA NTRS1998

Alteration Products and Secondary Minerals in Martian Meteorite Allan Hills 84001

The martian meteorites contain alteration products and secondary minerals that are a critical part of understanding their near-surface histories on both Mars and Earth. In some martian meteorites, suspected martian preterrestrial alteration products can be distinguished from terrestrial weathering effects Using scanning electron microscopy (SEM), field emission SEM (FE-SEM), transmission electron microscopy (TEM), and energy-dispersive X-ray analysis (EDS), we are studying natural fracture surfaces of ALH 84001 chips, including samples from both the interior and the exterior of the meteorite. Exterior samples include fusion crust surfaces, which are important in determining the extent of terrestrial weathering of meteorites. The focus of this study is weathering features and secondary minerals other than the distinctive carbonate globules that continue to be studied by many researchers.

Wentworth, S. J.↗

NASA NTRS2000

Hopanoid Biomarker Preservation In Coniform (Phormidium) Stromatolites in Siliceous Thermal Springs, Yellowstone National Park

The microbial communities that characterize modem hydrothermal ecosystems serve as modern analogs to those thought to have dominated early environments on Earth and possibly Mars. The importance of such hydrothermal systems as targets in exploring for an early biosphere on Mars is well established. Such work provides an important basis for the analysis of Martian samples associated with such environments. The surviving molecular structure and isotopic signature of diagnostic lipid biomarkers found as chemical fossils can provide a link between modern bacterially dominated ecosystems and their ancient counterparts. We are interested in the processes involved in the deposition and/or degradation of organic material in moderately thermal, silicifying microbial mats, particularly as this relates to the potential for preservation of some biomarker components known to be more highly resistant to microbial degradation. Several excellent biomarker molecules are associated with the cyanobacteria that dominate these mats, particularly the 2-methylbacteriohopanepolyols (2-MeBHP). These compounds are ubiquitous on Earth and are not easily degraded in nature, a fact documented by their detection in ancient Earth rocks dating back as far as 2,700 Ma.

Jahnke, Linda L.↗