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All sourcesNASA NTRSDOE OSTI
DOE OSTI2026

Reflections on the Shifting Experiences of Scientific Infrastructure

Infrastructure of all types is fundamental to modern work and life. Computing for scientific work, especially, extends from distributed local research sites, often at the edges of other major systems, outward into globally connected high-performance facilities and infrastructures. This commentary reviews longstanding research on the social characteristics of infrastructure. We reflect on social concerns that affect the ongoing development, use, and maintenance of a wide range of scientific computing and data resources. Reflecting on the social nature of infrastructure is timely for Computing in Science & Engineering readers, given continued emphasis on developing even more expansive platforms for data and artificial intelligence work in science (e.g., the United States’ Genesis Mission). We assert that, regardless of technological advances, the complex nature of scientific research and data will require continued understanding of longstanding and nascent social practices across varied communities. This is fundamentally necessary to build and sustain usable infrastructure or platforms that can productively advance scientific research.

Paine, Drew [Lawrence Berkeley National Laboratory↗
DOE OSTI2023

TROPHY: A Topologically Robust Physics-Informed Tracking Framework for Tropical Cyclones

Tropical cyclones (TCs) are among the most destructive weather systems. Realistically and efficiently detecting and tracking TCs are critical for assessing their impacts and risks. In particular, the eye is a signature feature of a mature TC. Therefore, knowing the eyes’ locations and movements is crucial for both operational weather forecasts and climate risk assessments. Recently, a multilevel robustness framework has been introduced to study the critical points of time-varying vector fields. The framework quantifies the robustness (i.e., structural stability) of critical points across varying neighborhoods. By relating the multilevel robustness with critical point tracking, the framework has demonstrated its potential in cyclone tracking. An advantage is that it identifies cyclonic features using only 2D wind vector fields, which is encouraging as most tracking algorithms require multiple dynamic and thermodynamic variables at different altitudes. A disadvantage is that the framework does not scale well computationally for datasets containing a large number of cyclones. Herein this paper introduces a topologically robust physics-informed tracking framework (TROPHY) for TC tracking. The main idea is to integrate physical knowledge of TC to drastically improve the computational efficiency of multilevel robustness framework for large-scale climate datasets. First, during preprocessing, we propose a physics-informed feature selection strategy to filter 90% of critical points that are short-lived and have low stability, thus preserving good candidates for TC tracking. Second, during in-processing, we impose constraints during the multilevel robustness computation to focus only on physics-informed neighborhoods of TCs. We apply TROPHY to 30 years of 2D wind fields from reanalysis data in ERA5 and generate a number of TC tracks. In comparison with the observed tracks, we demonstrate that TROPHY can capture TC characteristics (e.g., frequency, intensity, duration, latitudes with maximum intensity, and genesis) that are comparable to and sometimes even better than a well-validated TC tracking algorithm that requires multiple dynamic and thermodynamic scalar fields.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2024

Incipient carbonate melting drives metal and sulfur mobilization in the mantle

We present results from high-pressure, high-temperature experiments that generate incipient carbonate melts at mantle conditions (~90 kilometers depth and temperatures between 750° and 1050°C). We show that these primitive carbonate melts can sequester sulfur in its oxidized form of sulfate, as well as base and precious metals from mantle lithologies of peridotite and pyroxenite. It is proposed that these carbonate sulfur–rich melts may be more widespread than previously thought and that they may play a first-order role in the metallogenic enhancement of localized lithospheric domains. They act as effective agents to dissolve, redistribute, and concentrate metals within discrete domains of the mantle and into shallower regions within Earth, where dynamic physicochemical processes can lead to ore genesis at various crustal depths.

58 GEOSCIENCES↗
DOE OSTI2019

Experimental Evolution of Extreme Resistance to Ionizing Radiation in Escherichia coli after 50 Cycles of Selection

In prior work (D. R. Harris et al., J Bacteriol 191:5240–5252, 2009, https://doi.org/10.1128/JB.00502-09; B. T. Byrne et al., Elife 3:e01322, 2014, https://doi.org/10.7554/eLife.01322), we demonstrated that Escherichia coli could acquire substantial levels of resistance to ionizing radiation (IR) via directed evolution. Major phenotypic contributions involved adaptation of organic systems for DNA repair. We have currently undertaken an extended effort to generate E. coli populations that are as resistant to IR as Deinococcus radiodurans . After an initial 50 cycles of selection using high-energy electron beam IR, four replicate populations exhibit major increases in IR resistance but have not yet reached IR resistance equivalent to D. radiodurans . Regular deep sequencing reveals complex evolutionary patterns with abundant clonal interference. Prominent IR resistance mechanisms involve novel adaptations to DNA repair systems and alterations in RNA polymerase. Adaptation is highly specialized to resist IR exposure, since isolates from the evolved populations exhibit highly variable patterns of resistance to other forms of DNA damage. Sequenced isolates from the populations possess between 184 and 280 mutations. IR resistance in one isolate, IR9-50-1, is derived largely from four novel mutations affecting DNA and RNA metabolism: RecD A90E, RecN K429Q, and RpoB S72N/RpoC K1172I. Additional mechanisms of IR resistance are evident. IMPORTANCE Some bacterial species exhibit astonishing resistance to ionizing radiation, with Deinococcus radiodurans being the archetype. As natural IR sources rarely exceed mGy levels, the capacity of Deinococcus to survive 5,000 Gy has been attributed to desiccation resistance. To understand the molecular basis of true extreme IR resistance, we are using experimental evolution to generate strains of Escherichia coli with IR resistance levels comparable to Deinococcus . Experimental evolution has previously generated moderate radioresistance for multiple bacterial species. Yet, these efforts could not take advantage of modern genomic sequencing technologies. In this report, we examine four replicate bacterial populations after 50 selection cycles. Genomic sequencing allows us to follow the genesis of mutations in populations throughout selection. Novel mutations affecting genes encoding DNA repair proteins and RNA polymerase enhance radioresistance. However, more contributors are apparent.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Hydrologic windows into the crystalline basement and their controls on groundwater flow patterns across the Paradox Basin, western USA

Conceptual models of sedimentary basin groundwater flow systems typically assume that the crystalline basement acts as an impermeable boundary and can be neglected. In this study, we use hydrologic models constrained by isotopic and geochemical datasets to argue that the La Sal Mountains, Utah, USA, act as a hydrologic window into the Paradox Basin’s lower aquifer system and underlying crystalline basement. We conducted a sensitivity study in which we varied crystalline basement/laccolith permeability as well as fault zone connectivity along a cross-sectional transect from the La Sal Mountains to Lisbon Valley. When the crystalline basement/laccolith units are set at relatively permeable levels (10–14 m 2 ), simulated tracers that include total dissolved solids, oxygen isotopic composition of pore fluids (δ 18 O), and groundwater residence times are in closest agreement with field measurements. Model results indicate that pore fluids in the basal aquifer system underlying the Paradox Formation confining unit are a mixture of relatively young meteoric fluids and older Paradox Formation brines. The presence of faults did not significantly modify fluid exchange between the upper and lower aquifer systems. This was due, in part, to underpressuring within the Paradox Formation. Our study concludes that the Paradox Basin represents a regional recharge area for the Colorado Plateau, with groundwater discharge occurring along the Colorado River within the Grand Canyon some 375 km away to the southwest. This is only possible with a permeable crystalline basement. Our findings help explain the genesis of Mississippi Valley-type ore deposits of the US Midcontinent, where the presence of a permeable basement may be useful in addressing issues related to solute mass and energy balance.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Zinc isotope constraints on the cycling of carbon in the Bermuda mantle source

Volatile recycling and storage in the mantle transition zone (MTZ) is important for the refertilization of the upper mantle and is associated with the generation of high-µ (HIMU, where µ is 238 U/ 204 Pb) mantle. One way to probe the MTZ and the processes associated with mantle convection is to sample lavas that originate from the shallow mantle and were contaminated by upwelling from the MTZ, such as at the previously proposed shallow plume of Bermuda. Here we present the first δ 66 Zn isotopic compositions of Bermuda silica-undersaturated and silica-saturated lavas to explore the origin of the carbon-rich lithologies and the genesis of the large seamount found in the western North Atlantic Ocean. Contrasting with global δ 66 Zn data sets, our results (δ 66 Zn between 0.24 ± 0.04 and 0.41 ± 0.04) do not support direct sampling of recycled marine carbonates in the Bermuda HIMU mantle. Instead, we show that δ 66 Zn fractionation toward higher values is associated with magmatic processes and incorporation of carbon sourced from deep fluids associated with the formation of carbonatites. These carbon-rich fluids are likely sourced from the metasomatic reactions between the subducted cold slab of the Iapetus oceanic lithosphere ca. 500 Ma and the thickened continental lithospheric mantle of Pangea. Melting of this metasomatized mantle was triggered by the arrival of the Farallon slab to the eastern North American margin in the late Cenozoic via shallow convection.

Mazza, Sarah E. [Smith College, Northampton, MA (U↗
DOE OSTI2020

slaclab/Genesis-1.3-Version2

The latest release of Genesis supports parallel computer architecture, based on the Message Passing Interface (MPI) protocol.

Mayes, Christopher↗
DOE OSTI2023

Depth-First Atmospheric River lifecycle Tracking (DART) v1

This algorithm will identify the genesis and track the lifecycle of atmospheric rivers. It can be applied in different global atmospheric river detection algorithms. It is one of the earliest atmospheric river lifecycle tracking algorithms.

Zhou, Yang↗
DOE OSTI2024

Automated Operational Forecasting of Monsoon Low Pressure Systems

Monsoon low pressure systems (LPSs) are the dominant rain-bearing weather system of South Asia, often producing extreme precipitation and hydrological disasters in a region inhabited by nearly two billion people. Despite the importance of these storms, no operational system has automatically identified and tracked LPS in real time in numerical weather prediction model output; many commonly used vortex-tracking algorithms are ill suited for monsoon LPS because of the weak winds and cold cores of these systems. Here, we describe a new system that uses optimized algorithms to identify monsoon LPS in short- to medium-range forecasts from the U.S. Global Ensemble Forecast System (GEFS) and a version of the deterministic Global Forecast System (GFS) adapted and used operationally by the Indian Institute of Tropical Meteorology (IITM). We also assess the historical performance of these models in forecasting South Asian monsoon LPS, comparing this with the performance of the Integrated Forecasting System of the ECMWF. We assess the accuracy of model predictions of LPS genesis, position, intensity, and precipitation rates for forecast lead times of 1–5 days, yielding quantitative information on model biases to guide operational forecasters and disaster managers. The system we introduce here could be extended to other low-latitude regions affected by dynamically weak, heavily precipitating atmospheric vortices that are often not included in tropical cyclone inventories.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2018

New York City Impacts on a Regional Heat Wave

Abstract Extreme heat events are projected to increase in magnitude and frequency throughout this century due to increasing global temperatures, making it critically important to acquire improved understanding of their genesis and interactions with large cities. This study presents an application of the factor separation method to assess combined impacts of a synoptic scale heat wave, urban land cover, and urban energy and momentum fluxes on temperatures and winds over New York City via use of high resolution simulations (1 km grid spacing) with an urbanized WRF model. Results showed that, while the heat wave had the largest contribution to temperatures (> 8°C), urban surface factors matched it in highly urbanized areas. Surface factors matched this in highly urbanized areas during night and early morning hours, with contributions up to 5°C, when calm land breeze conditions result in a strong urban heat island. Positive interactions between all factors during morning and nighttime indicate urban heat island amplification of up to 4°C during the heat wave. Midtown Manhattan vertical cross-sections, where urban canopies are most dense, showed a change in the sign (from positive to negative) of the contribution of the urban fluxes between night and day below 500 m, possibly due to radiation blocking and increased thermal storage by buildings as well as frictional effects opposing the incoming warm air.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Metrics for evaluating tropical cyclones in climate data

This manuscript describes a software suite that can be used for objective evaluation of tropical cyclones (TCs) in gridded climate data. Using cyclone trajectories derived from 6-hourly data, a comprehensive set of metrics is defined to systematically compare and contrast products to one another. In addition to annual TC climatologies, attention is paid to spatial and temporal patterns of storm occurrence and intensity. Assessment can be performed either on the global scale or regional domains. Simple to visualize ‘scorecards’ allow for rapid credibility assessment. We showcase three key findings enabled by this suite. First, we compare the representation of TCs in seven current-generation global reanalyses and conclude that higher resolution models and those with TC-specific assimilation contain more accurate storm climatologies. Second, using a free-running Earth system model (ESM) we find that full basin refinement is required in variable-resolution configurations to adequately simulate North Atlantic TC frequency. Furthermore, upstream refinement over northern Africa offers little benefit in simulating storm occurrence but spatial genesis patterns are improved. Finally, we show that TCs simulated by ESMs can be highly sensitive to individual parameterizations in climate models, with North Atlantic TC metrics varying greatly depending on version of the Morrison-Gettelman microphysics package.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

A Simple Lagrangian Parcel Model for the Initiation of Summer-time Mesoscale Convective Systems over the Central United States

Mesoscale convective systems (MCSs) account for more than 50% of summertime precipitation over the central United States and have a significant impact on local weather and hydrologic cycle. It is hypothesized that the inadequate treatment of MCSs is responsible for the long-standing warm and dry bias over the central United States in coarse-resolution general circulation model (GCM) simulations. In particular, a better understanding of MCS initiation is still lacking. Here a single-column Lagrangian parcel model is first developed to simulate the basic features of a rising parcel. This simple model demonstrates the collective effects of boundary layer moistening and dynamical lifting in triggering convective initiation and reproduces successfully its early afternoon peak with surface equivalent potential temperature as a controlling factor. It also predicts that convection is harder to trigger in the future climate under global warming, consistent with the results from convection-permitting regional climate simulations. Then, a multicolumn model that includes an array of single-column models aligned in the east–west direction and incorporates idealized cold pool interaction mechanisms is developed. The multicolumn model captures readily the cold pool–induced upscale growth feature in MCS genesis from initially scattered convection that is organized into a mesoscale cluster in a few hours. It also highlights the crucial role of lifting effects due to cold pool collision and spreading, subsidence effect, and gust front propagation speed in controlling the final size of mesoscale clusters and cold pool regions. This simple model should be useful for understanding fundamental mechanisms of MCS initiation and providing guidance for improving MCS simulations in GCMs.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2018

The Influence of ENSO Flavors on Western North Pacific Tropical Cyclone Activity

El Niño–Southern Oscillation (ENSO) is a major source of seasonal western North Pacific (WNP) tropical cyclone (TC) predictability. However, the spatial characteristics of ENSO have changed in recent decades, from warming more typically in the eastern equatorial Pacific during canonical or cold tongue El Niño to warming more typically in the central equatorial Pacific during noncanonical or warm pool El Niño. We investigated the response in basinwide WNP TC activity and spatial clustering of TC tracks to the location and magnitude of El Niño using observations, TC-permitting tropical channel model simulations, and a TC track clustering methodology. We found that simulated western North Pacific TC activity, including accumulated cyclone energy (ACE) and the number of typhoons and intense typhoons, is more effectively enhanced by sea surface temperature warming of the central, compared to the eastern, equatorial Pacific. El Niño also considerably influenced simulated TC tracks regionally, with a decrease in TCs that were generated near the Asian continent and an increase in clusters that were dominated by TC genesis in the southeastern WNP. This response corresponds with the spatial pattern of reduced vertical wind shear and is most effectively driven by central Pacific SST warming. Finally, internal atmospheric variability generated a substantial range in the simulated season total ACE (±25% of the median). However, extremely active WNP seasons were linked with El Niño, rather than internal atmospheric variability, in both observations and climate model simulations.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2019

High-Resolution Tropical Channel Model Simulations of Tropical Cyclone Climatology and Intraseasonal-to-Interannual Variability

We tailored a tropical channel configuration of the Weather Research and Forecasting (WRF) Model to study tropical cyclone (TC) activity and associated climate variabilities. This tropical channel model (TCM) covers from 30°S to 50°N at 27-km horizontal resolution, with physics parameterizations carefully selected to achieve more realistic simulations of TCs and large-scale climate mean states. In this work we performed 15-member ensembles of retrospective simulations from 1982 to 2016 hurricane seasons. A thorough comparison with observations demonstrates that the TCM yields significant skills in simulating TC activity climatology and variabilities in each basin, as well as TC physical structures. The correlation of the ensemble averaged accumulated cyclone energy (ACE) with observations in the western North Pacific (WNP), eastern North Pacific (ENP), and North Atlantic (NAT) is 0.80, 0.64, and 0.61, respectively, but is insignificant in the north Indian Ocean (NIO). Moreover, the TCM-simulated modulations of El Niño–Southern Oscillation (ENSO) and the Madden–Julian oscillation (MJO) on the large-scale environment and TC genesis also agree well with observations. To examine the TCM’s potential for seasonal TC prediction, the model is used to forecast the 2017 and 2018 hurricane seasons, using bias-corrected sea surface temperatures (SSTs) from the CFSv2 seasonal prediction results. The TCM accurately predicts the hyperactive 2017 NAT hurricane season and near-normal WNP and ENP hurricane seasons when initialized in May. In addition, the TCM accurately predicts TC activity in the NAT and WNP during the 2018 season, but underpredicts ENP TC activity, in association with a poor ENSO forecast.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

The Influence of ENSO Diversity on Future Atlantic Tropical Cyclone Activity

El Niño–Southern Oscillation (ENSO) influences seasonal Atlantic tropical cyclone (TC) activity by impacting environmental conditions important for TC genesis. However, the influence of future climate change on the teleconnection between ENSO and Atlantic TCs is uncertain, as climate change is expected to impact both ENSO and the mean climate state. We used the Weather Research and Forecasting Model on a tropical channel domain to simulate 5-member ensembles of Atlantic TC seasons in historical and future climates under different ENSO conditions. Experiments were forced with idealized sea surface temperature configurations based on the Community Earth System Model (CESM) Large Ensemble representing: a monthly varying climatology, eastern Pacific El Niño, central Pacific El Niño, and La Niña. The historical simulations produced fewer Atlantic TCs during eastern Pacific El Niño compared to central Pacific El Niño, consistent with observations and other modeling studies. For each ENSO state, the future simulations produced a similar teleconnection with Atlantic TCs as in the historical simulations. Specifically, La Niña continues to enhance Atlantic TC activity, and El Niño continues to suppress Atlantic TCs, with greater suppression during eastern Pacific El Niño compared to central Pacific El Niño. In addition, we found a decrease in the Atlantic TC frequency in the future relative to historical regardless of ENSO state, which was associated with a future increase in northern tropical Atlantic vertical wind shear and a future decrease in the zonal tropical Pacific sea surface temperature (SST) gradient, corresponding to a more El Niño–like mean climate state. Our results indicate that ENSO will remain useful for seasonal Atlantic TC prediction in the future.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Are North Atlantic Tropical Cyclones Modulated by the Madden–Julian Oscillation in HighResMIP AGCMs?

This study assesses the representation of the observed relationship between Atlantic tropical cyclones (TCs) and the Madden–Julian oscillation (MJO) across nine models participating in CMIP6 High Resolution Model Intercomparison Project (HighResMIP). Most models struggle to faithfully reproduce the observed impacts of the MJO on Atlantic TCs, with the primary issue being the underestimated TC activity over the Atlantic main development region (MDR). The negative biases in genesis frequency within the MDR can be further attributed to weaker-than-observed African easterly wave (AEW) activity south of ∼12°N. Errors in the diabatic heating profile within the Atlantic intertropical convergence zone lead to insufficient potential vorticity production in the lower troposphere and constrain the amplification of AEWs. In addition to the biased TC climatology, the eastward-propagating power of the MJO is consistently underestimated across all models. Nevertheless, in models with a higher eastward–westward power ratio, the simulated MJO demonstrates a stronger capacity to modulate subseasonal TC activity. Models with relatively realistic eastward propagation of the MJO also exhibit greater variance in tropical intraseasonal convection. Stronger contrasts in convective heating over the North Atlantic between phases 2–3 and phases 6–7 drive larger fluctuations in MDR shear and AEW activity over the Gulf of Mexico and West Africa, resulting in a more pronounced TC response to the MJO. Overall, our findings suggest that improved MDR TC climatology and MJO propagation are essential for models to accurately capture the observed modulations of Atlantic TCs by the MJO.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2026

Future Projection of Tropical Upper-Tropospheric Troughs and Implications for Tropical Cyclone Activity

Summertime tropical upper-tropospheric troughs (TUTTs) provide a unified framework to better understand how extratropical and tropical forcings jointly modulate basin-scale tropical cyclone (TC) activity. In this study, we examine future changes in TUTTs and their implications for TC activity. Multimodel ensemble-mean projections from 45 Coupled Model Intercomparison Project phase 6 (CMIP6) models suggest a contraction of the Pacific TUTT and an expansion of the Atlantic TUTT as the climate warms. Consistently, future changes in environment-based TC indices indicate that the large-scale conditions will become more favorable for TC genesis and intensification over the central North Pacific but less favorable over the tropical North Atlantic and Gulf of Mexico. Utilizing a TC-permitting large-ensemble dataset [i.e., the Database for Policy Decision-Making for Future Climate Change (d4PDF)] that adequately captures the observed interannual TUTT–TC relationships, we further confirm the impacts of projected TUTT changes on the TC activity in a warmer climate. In contrast, the TUTT–TC relationship is poorly represented in most CMIP6 High-Resolution Model Intercomparison Project (HighResMIP) models; such deficiencies call for caution when assessing future TC risk based on explicitly tracked TCs in these models. Additionally, CMIP6 projections show large intermodel spread in TUTT changes, implying uncertainty in projected TC activity, especially over the central-to-eastern Pacific and the North Atlantic. This intermodel spread is associated with interhemispheric sea surface temperature warming asymmetry, which leads to a meridional shift of the intertropical convergence zone (ITCZ) and the simultaneous weakening or strengthening of TUTTs in the North Pacific and North Atlantic. The potential contributions of anthropogenic aerosol forcing and oceanic circulation to this interhemispheric warming asymmetry are briefly examined.

Climate Change↗
DOE OSTI2020

Characteristics of Ice Cloud–Precipitation of Warm Season Mesoscale Convective Systems over the Great Plains

Abstract In this study, the mesoscale convective systems (MCSs) are tracked using high-resolution radar and satellite observations over the U.S. Great Plains during April–August from 2010 to 2012. The spatiotemporal variability of MCS precipitation is then characterized using the Stage IV product. We found that the spatial variability and nocturnal peaks of MCS precipitation are primarily driven by the MCS occurrence rather than the precipitation intensity. The tracked MCSs are further classified into convective core (CC), stratiform rain (SR), and anvil clouds regions. The spatial variability and diurnal cycle of precipitation in the SR regions of MCSs are not as significant as those of MCS precipitation. In the SR regions, the high-resolution, long-term ice cloud microphysical properties [ice water content (IWC) and ice water paths (IWPs)] are provided. The IWCs generally decrease with height. Spatially, the IWC, IWP, and precipitation are all higher over the southern Great Plains than over the northern Great Plains. Seasonally, those ice and precipitation properties are all higher in summer than in spring. Comparing the peak timings of MCS precipitation and IWPs from the diurnal cycles and their composite evolutions, it is found that when using the peak timing of IWPSR as a reference, the heaviest precipitation in the MCS convective core occurs earlier, while the strongest SR precipitation occurs later. The shift of peak timings could be explained by the stratiform precipitation formation process. The IWP and precipitation relationships are different at MCS genesis, mature, and decay stages. The relationships and the transition processes from ice particles to precipitation also depend on the low-level humidity.

54 ENVIRONMENTAL SCIENCES↗