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All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

An improved Method for Determining Transient Fuel Dilution of Oil in an Internal-Combustion Engine Using Laser-Induced Florescence and Multivariate Least Square Calibration

An optical diagnostic, based on laser-induced fluorescence (LIF), has been developed for on-engine measurements of real-time fuel dilution of engine oil or fuel in oil (FIO). Fuel dilution of oil is broadly relevant to advancing engine technology including durability, calibration, and catalyst-system management, and believed to promote destructive stochastic pre-ignition (SPI) during high-load engine operations. While standard (e.g., ASTM D3524-90) methods are not capable of real-time transient measurements, the LIF technique resolves transient dilution on the minutes time scale. We have expanded on our original FIO instrument development by introducing an improved analysis based on multivariate least square chemometrics analysis. The measurement uses a fuel dye (180–1300 parts per million, by mass) and monitors for its presence in the oil using 532 nm excitation and LIF. While the original FIO instrument utilized a two-color ratio method for analysis, the improved chemometric analysis uses the fully resolved LIF dye spectra to provide better predictive FIO accuracy (>92%) over a wide FIO range (1.5–14%) typical of engine application. We also investigate the effect of oil temperature on the LIF signal. Limited engine applications for demonstrating and validating the improved FIO instrument are shown, and the related data used to quantify practical detection limit and sensitivity. The improved analysis is insensitive to laser power fluctuation and change in detector integration time, providing an excellent FIO sensitivity (1–2%) and detection limit (0.01 %FIO) over a wide range of loads and injection timings, illustrating this updated approach to be a promising tool for advancing engine technology.

42 ENGINEERING↗
DOE OSTI2016

Materials & Engineering: Propelling Innovation MRS Bulletin Special Issue Session

Materials enable engineering; and, engineering in turn depends on materials to transform design concepts and equations into physical entities. This relationship continues to grow with expanding societal demand for new products and processes. MRS Bulletin, a publication of the Materials Research Society (MRS) and Cambridge University Press, planned a special issue for December 2015 on Materials and Engineering: Propelling Innovation. This special issue of MRS Bulletin captured the unique relationship between materials and engineering, which are closely intertwined. A special half day session at the 2015 MRS Fall Meeting in Boston captured this discussion through presentations by high level experts followed by a panel discussion on what it takes to translate materials discoveries into products to benefit society. The Special Session included presentations by experts who are practitioners in materials as well as engineering applications, followed by a panel discussion. Participants discussed state-of-the-art in materials applications in engineering, as well as how engineering needs have pushed materials developments, as also reflected in the 20 or so articles published in the special issue of MRS Bulletin. As expected, the discussions spanned the broad spectrum of materials and provided very strong interdisciplinary interactions and discussions by participants and presenters.

36 MATERIALS SCIENCE↗
DOE OSTI2013

Evaluating the Impact of E15 on Snowmobile Engine Durability and Vehicle Driveability: September 22, 2010 - August 15, 2013

The objective of this study was to evaluate the effects of E15 on current and legacy snowmobile engines and vehicles that could occur due to misfueling by the vehicle owner. Three test scenarios were conducted to evaluate the impact of E15, including cold-start performance and emissions, on-snow vehicle driveability, and laboratory exhaust emissions over the useful life of the engine. The eightengines tested represent current and legacy product that may exhibit sensitivity to increased ethanol blended in gasoline. Because a limited number of snowmobile engines were evaluated for this test program, the results are not statistically significant. However, the broad range of engine and mixture preparation technologies, combined with the various test scenarios provide preliminaryinformation to assess potential issues with E15 use in snowmobiles. Cold-start tests were performed at -6.7 degrees C (20 degrees F), -17.8 degrees C (0 degrees F), and -28.9 degrees C (-20 degrees F). The evaluation included time to start or number of pulls to start, engine speed, exhaust gas temperature, and start-up engine emissions concentrations. Statistically significant differences instarting times were not observed for most vehicles. Snowmobile driveability was analyzed using a subjective evaluation on a controlled test course. The drivers could not easily discern which fuel the snowmobiles were using during the subjective evaluation. Durability tests were conducted to measure the emissions and performance of the snowmobiles over the useful life of the vehicles (5,000miles). There were no fuel-related engine failures on E0 or E15. Carbon monoxide emissions were generally reduced by E15 relative to E0, by from 10% to 35%. Occasional misfueling of snowmobiles with E15 is not likely to cause noticeable or immediate problems for consumers. E15 is not approved for snowmobile use, and observations made during this study support the U.S. Environmental ProtectionAgency's decision to not approve E15 for snowmobiles.

33 ADVANCED PROPULSION SYSTEMS↗
DOE OSTI2019

Engineering Analysis Baseline Model Requirements

The purpose of this document is to set requirements for the development, documentation, implementation, and maintenance of engineering analysis baseline models used by the Advanced Engineering and Analysis group to model and simulate systems. The intended audience of this document is the Engineering Technology and Design division Advanced Engineering and Analysis group—in particular the baseline model owners and users—and the Group Leaders and members of the Systems Engineering groups. Section 1 presents a discussion of general concepts related to engineering analysis models and baseline models, including definitions of common terms used in this requirements document. It also presents the purpose and intentions of creating and using baseline models and exposes some underlying assumptions about what baseline models are supposed to be. Section 2 presents requirements on the general categories of: the Advanced Engineering and Analysis Group Leader and the baseline model owner; parts, materials, and load cases; the process of generating and using the model; and how the baseline model will be stored, maintained, and documented. This document presents requirements on the baseline model as well as some aspects of the development process and the people responsible for the development; it does not address how the results of simulations utilizing these models will be used to make assessments

42 ENGINEERING↗
DOE OSTI2018

High-Efficiency VCR Engine with Variable Valve Actuation and New Supercharging Technology

Higher efficiency engines are needed for full size pickup trucks, utility vans and medium duty trucks. The primary objective of the program was to demonstrate the potential for improving the fuel economy of a full-size pickup truck by 40 percent while producing at least 281 horsepower. Commercialization requirements include: 1. High torque values at low vehicle speeds: This capability is needed for accelerating a heavy vehicle from a standstill, accelerating uphill, towing or any combination of these factors. 2. High power output: This capability is needed for accelerating onto a highway or passing at higher speeds. The vehicle may be carrying a heavy load, going uphill and/or towing. 3. Compliance with tailpipe emission regulations: This requirement must be met, and is difficult or costly to attain with diesel engine technology. 4. Low fuel consumption: This capability is needed both for reducing operating costs and to reduce greenhouse gas (GHG) vehicle emissions. The capability is also essential for complying with fuel economy standards. 5. Affordability: The powertrain cost must be consistent with mass market pricing. 6. Engine size and weight: The engine must fit in the existing engine bays. Engine weight must also be minimized. 7. Favorable noise vibration and harshness (NVH): The VCR must not present unique NVH challenges. The current program was successful. The efficiency target was achieved and the engine produced 300 horsepower.

33 ADVANCED PROPULSION SYSTEMS↗
DOE OSTI2022

Co-optimized Mixed-Mode Engine and Fuel Demonstrator for Improved Fuel Economy while Meeting Emissions Requirements

Progressively increasing regulatory demands on fuel economy and future global emission standards have led to a focus on advanced engine development to improve overall engine efficiency and fulfill emission requirements. Low temperature combustion (LTC) and gasoline compression ignition (GCI) are promising technologies to achieve these goals and have the advantage of using existing refinery infrastructure and subsequent economies of scale for a robust energy supply. By applying spark ignition (SI) for cold start, LTC for low load operations, and GCI for medium to high load operations, a multimode GCI engine concept was proposed and the fuel formation was co-optimized to maximize fuel economy improvement potential while maintaining ULEV 70 emissions standards. HATCI has successfully demonstrated the feasibility of this multimode GCI engine concept, and confirmed the fuel economy improvement over the baseline SI engine by simulating the FTP75 vehicle drive cycle. In this report, the technical approaches, multimode engine control, and engine test results of both steady state and transitions, CFD modeling, fuel testing, and FTP75 drive cycle simulation results are summarized, followed with technical challenges observed, and recommendations for possible follow-up studies.

02 PETROLEUM↗
DOE OSTI2013

Classification of Volatile Engine Particles

Volatile particles cannot be detected at the engine exhaust by an aerosol detector. They are formed when the exhaust is mixed with ambient air downstream. Lack of a precise definition of volatile engine particles has been an impediment to engine manufacturers and regulatory agencies involved in the development of an effective control strategy. It is beyond doubt that volatile particles from combustion sources contribute to the atmospheric particulate burden, and the effect of that contribution is a critical issue in the ongoing research in the areas of air quality and climate change. A new instrument, called volatile particle separator (VPS), has been developed. It utilizes a proprietary microporous metallic membrane to separate particles from vapors. VPS data were used in the development of a two-parameter function to quantitatively classify, for the first time, the volatilization behavior of engine particles. The value of parameter A describes the volatilization potential of an aerosol. A nonvolatile particle has a larger A-value than a volatile one. The value of parameter k, an effective evaporation energy barrier, is found to be much smaller for small engine particles than that for large engine particles. The VPS instrument provides a means beyond just being a volatile particle remover; it enables a numerical definition to characterize volatile engine particles.

Engine emission↗
DOE OSTI2020

Ducted Fuel Injection versus Conventional Diesel Combustion: An Operating-Parameter Sensitivity Study Conducted in an Optical Engine with a Four-Orifice Fuel Injector

Ducted fuel injection (DFI) has been shown to attenuate engine-out soot emissions from diesel engines. The concept is to inject fuel through a small tube within the combustion chamber to enable lower equivalence ratios at the autoignition zone, relative to conventional diesel combustion. Previous experiments have demonstrated that DFI enables significant soot attenuation relative to conventional diesel combustion for a small set of operating conditions at relatively low engine loads. This is the first study to compare DFI to conventional diesel combustion over a wide range of operating conditions and at higher loads (up to 8.5 bar gross indicated mean effective pressure) with a four-orifice fuel injector. This study compares DFI to conventional diesel combustion through sweeps of intakeoxygen mole fraction (XO 2 ), injection duration, intake pressure, start of combustion (SOC) timing, fuel-injection pressure, and intake temperature. DFI is shown to curtail engine-out soot emissions at all tested conditions. Under certain conditions, DFI can attenuate engine-out soot by over a factor of 100. In addition to producing significantly lower engine-out soot emissions, DFI enables the engine to be operated at low-NO x conditions that are not feasible with conventional diesel combustion due to high soot emissions.

42 ENGINEERING↗
DOE OSTI2018

Numerical Methodology for Optimization of Compression-Ignited Engines Considering Combustion Noise Control

It is challenging to develop highly efficient and clean engines while meeting user expectations in terms of performance, comfort, and drivability. One of the critical aspects in this regard is combustion noise control. Combustion noise accounts for about 40 percent of the overall engine noise in typical turbocharged diesel engines. The experimental investigation of noise generation is difficult due to its inherent complexity and measurement limitations. Therefore, it is important to develop efficient numerical strategies in order to gain a better understanding of the combustion noise mechanisms. In this work, a novel methodology was developed, combining computational fluid dynamics (CFD) modeling and genetic algorithm (GA) technique to optimize the combustion system hardware design of a high-speed direct injection (HSDI) diesel engine, with respect to various emissions and performance targets including combustion noise. The CFD model was specifically set up to reproduce the unsteady pressure field inside the combustion chamber, thereby allowing an accurate prediction of the acoustic response of the combustion phenomena. The model was validated by simulating several steady operating conditions and comparing the numerical results against experimental data, in both temporal and frequency domains. Thereafter, a GA optimization was performed with the goal of minimizing indicated specific fuel consumption (ISFC) and combustion noise, while restricting pollutant (soot and NOx) emissions to their respective baseline values. Eight design variables were selected pertaining to piston bowl geometry, nozzle inclusion angle, number of injector nozzle holes, and in-cylinder swirl. An objective merit function (MF) based on the emissions, ISFC, and combustion noise was constructed to quantify the strength of the engine designs and was determined using the CFD model as the function evaluator. The in-cylinder noise level was characterized by the total resonance energy of local pressure oscillations. The optimum engine configuration thus obtained showed a significant improvement in terms of efficiency and combustion noise compared to the baseline system, along with both soot and NOx emissions within their respective constraints. This optimum configuration included a deeper and tighter bowl geometry with higher swirl and larger number of nozzle holes. Subsequently, a more detailed acoustics analysis based on proper orthogonal decomposition (POD) technique was carried out to further explore the combustion noise benefits achieved by the GA optimum. In conclusion, this computational study is a first of its kind (to the best of the authors’ knowledge), which demonstrates a comprehensive framework to incorporate combustion noise into a numerical optimization strategy for engine design.

42 ENGINEERING↗
DOE OSTI2019

Analysis of the Effect of Vehicle Platooning on the Optimal Control of a Heavy Duty Engine Thermal System

One promising method for reducing fuel consumption and emissions, particularly in heavy duty trucks, is platooning. As the distance between vehicles decreases, the following vehicles will experience less aerodynamic drag on the front of the vehicle. However, reducing the velocity of the air contacting the front of the vehicle could have adverse effects on the temperature of the engine. To compensate for this effect, the energy consumption of the engine cooling system might increase, ultimately limiting the overall improvements obtained with platooning. Understanding the coupling between drag reduction and engine cooling load requirement is key for successfully implementing platooning strategies. Additionally, in a Connected and Automated Vehicle (CAV) environment, where information of the future engine load becomes available, the operation of the cooling system can be optimized in order to achieve the maximum fuel consumption reduction. In this paper, a control-oriented physics-based model for the engine cooling loop of a Volvo engine is developed and validated against road data. Starting from the validated model, an optimal control problem for the coolant system is formulated considering the tradeoff between the tracking of the engine temperature setpoint and the corresponding fuel consumption under different trailing distances. To compare the coolant system performance, Dynamic Programming (DP) is used to determine the global optimal solution for the coolant system actuator. The coupling between optimal cooling system operation and reduction in ram air are evaluated by comparing the results obtained from the DP under different platooning conditions against the unrestricted scenario. In addition, the paper analyzes the changes in the tradeoff between fuel consumption and setpoint tracking for different vehicle distances. This analysis will provide useful insight on the sensitivity of the coolant system controller calibration to the platoon distance.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2020

Achieving Diesel-Like Efficiency in a High Stroke-to-Bore Ratio DISI Engine under Stoichiometric Operation

This work explores pathways to achieve diesel-like, high-efficiency combustion with stoichiometric 3-way catalyst compatible spark ignition (SI). A high stroke-to-bore engine design (1.5:1) with cooled exhaust gas recirculation (EGR) and high compression ratio (r c ) was used to improve engine efficiency by up to 30% compared with a production turbocharged gasoline direct injection spark ignition engine. To achieve efficiency improvements, engine experiments were coupled with computational fluid dynamics simulations to guide and explain experimental trends between the original engine and the high stroke-to-bore ratio design (1.5:1). The effects of EGR and late intake valve closing (IVC) and fuel characteristics are investigated through their effects on knock mitigation. Direct injection of 91 RON E10 gasoline, 99 RON E0 gasoline, and liquified petroleum gas (i.e., propane/autogas) were evaluated with geometric rc ranging from 13.3:1 to 16.8:1. Finally, engine experiments demonstrated 47% gross thermal efficiency, and 45% net thermal efficiency at stoichiometric engine operation, at up to 17 bar IMEP and 2000 r/min with 16.8:1 rc.

42 ENGINEERING↗
DOE OSTI2020

Dicarboxylic acid emissions from a GDI engine equipped with a catalytic gasoline particulate filter

Dicarboxylic acids play an important role in atmospheric chemistry, yet their emissions from primary sources, such as internal combustion engines, has not been extensively studied. In this paper, KOH impregnated quartz filters were loaded with exhaust gases from a gasoline direct injection (GDI) engine equipped with a catalytic gasoline particulate filter (GPF). All filters were analyzed for carboxylic and dicarboxylic acids using a derivatized gas chromatography-mass spectroscopy method. Exhaust gas was sampled from pre-GPF and post-GPF locations to determine the performance of the GPF regarding acid conversion. Lean and stoichiometric engine modes were considered with non-oxygenated gasoline and 10% splash blended ethanol in gasoline (E10) to examine the impact of stoichiometry and fuel type. Acid emissions represented as much as 0.51% of total unburned hydrocarbon emissions for total monocarboxylic acids and as much as 0.40% for total dicarboxylic acids. Individual acid concentrations were as high as 38 mg/kg-fuel for monocarboxylic acids and as high as 29 mg/kg-fuel for dicarboxylic acids. Overall, the study found that fuel oxygenates had mixed impact on the acid emissions. Engine-out monocarboxylic acids were reduced when using the E10 fuel by approximately 30–45% for the stoichiometric condition and increased marginally for the lean condition. Dicarboxylic acid emissions were generally insensitive to ethanol content. However, the engine condition significantly affected the acid emissions. Lean operation produced a factor of two to an order of magnitude higher emissions rates of both monocarboxylic and dicarboxylic acids than the stoichiometric condition. The catalytic GPF eliminated between 80 and 92% of the acids emitted from the engine, allowing some acids to be emitted into the environment.

42 ENGINEERING↗
DOE OSTI2024

Piston geometry and stroke optimization for high efficiency propane spark ignition engines

Propane has unique properties and offers interesting characteristics for high-efficiency spark ignition engines. Its high volatility reduces or completely eliminates fuel-wall wetting and facilitates fuel air mixing. Furthermore, propane has a research octane number of 112 and a high octane sensitivity of 15. Finally, its laminar flame speed is on the same order as that of conventional gasoline, and it exhibits high dilution tolerance. Modern spark ignition internal combustion engines rely on fast combustion rates and high dilution to achieve high brake thermal efficiencies. To accomplish this, high stroke-to-bore ratios and high geometric compression ratios have been used in new engine designs. Therefore, propane’s relatively high laminar flame speeds, high knock resistance, and dilution tolerance make it an excellent candidate fuel for modern spark ignition engines. The objective of this work is to co-optimize the piston geometry and the engine stroke to maximize the efficiency of a spark-ignition engine fueled with propane. 3D computational fluid dynamics (CFD) simulations employing the extended coherent flamelet model were used to study the parametric effects of piston shape and stroke length. A piston geometry based on high performing pistons was parameterized using four controlling parameters. The piston geometry and engine stroke design space was explored using deterministic and quasi-random sampling techniques. In conclusion, a Gaussian process regression model was built using the simulation data to explain the results observed.

33 ADVANCED PROPULSION SYSTEMS↗
DOE OSTI2021

Gasoline fuels properties for multi-mode operation – Observations in a GDI and the CFR engine

The combustion behavior of five full boiling range RON98 gasoline blends was evaluated for multi-mode operation in a GDI and the CFR octane rating engine. The GDI engine tests were conducted with stoichiometric air-fuel ratio in spark-ignition (SI), and with air-diluted homogeneous charge compression ignition (HCCI) mode. In the CFR engine, the knocking combustion was analyzed under standard RON testing conditions at both peak knocking lambda and stoichiometric air-fuel ratios, whereas compression ignited operation was characterized by utilizing the HCCI number test protocol. Disparate knock limited SI and HCCI combustion behavior was observed for the test fuels, despite four of the fuels having the same RON and octane sensitivity. It was found that knock-limited combustion phasing in the GDI engine did not align well with the RON. However, a detailed comparison of knock-limited SI operation in the GDI and CFR engine revealed that a more appropriate effective RON based on a common knock intensity metric (MAPO) and stoichiometric air-fuel ratio resulted in comparable knock characterization between the two engine platforms. Furthermore, the critical intake air temperature and the critical compression ratio were proposed to characterize knock-limited SI operation, while the minimum intake air heating and compression ratio were used to define a fuel's autoignition propensity for compression ignition operation in the GDI and CFR engine, respectively. Finally, each fuel's characteristic compression ratio needed to obtain knock-limited SI (KLSI) and HCCI operation was used to calculate an effective multi-mode octane number (MM-ON) based on the primary reference fuel blends.

33 ADVANCED PROPULSION SYSTEMS↗
DOE OSTI2022

Caution on Using Tetrahydrofuran for Processing Crystalline Silica Samples From Engineered Stone for XRD Analysis

Abstract We conducted laboratory experiments to investigate a suspected effect of tetrahydrofuran (THF) on quantifying crystalline silica in samples collected from working with engineered stone when THF is used to process samples prior to the X-ray diffraction (XRD) analysis. Two groups of samples from grinding either engineered stone or granite were simultaneously taken from a laboratory testing system, with one group of samples using THF for processing and another group using muffle furnace for ashing. For each stone type, we also tested four levels of respirable dust loading on the samples by varying the grinding time from 1 to 8 min. Statistical analysis of the experimental results on crystalline silica contents of the two groups of samples showed that the difference between the two methods was not significant (P ≥ 0.05) for the granite at all four levels of respirable dust loading and for the engineered stone at the two levels of respirable dust loading greater than 0.5 mg. However, the crystalline silica content from using THF processing was significantly lower (P = 0.001) than that from using muffle furnace ashing for engineered stone when the respirable dust loading levels were less than 0.5 mg. For the engineered stone dust samples with grinding times of 1 and 2 min, the average respirable dust loading was about 0.19 and 0.34 mg, respectively; while the crystalline silica content from using THF processing was 30.9 and 21.5% lower than that from using muffle furnace ashing, respectively. Since most full-shift samples from field assessments in this industry are expected to have respirable dust loading less than 0.5 mg, muffle furnace or radio frequency plasma ashing should be specified as the preferred sample processing method instead of the THF processing method for quantification of crystalline silica when engineered stone is expected to present to avoid artificially reduced silica content values, which are likely caused by the reactions between THF and the resins in engineered stone.

Public, Environmental & Occupational Health↗
DOE OSTI2026

Dynamics and observational signatures of core-collapse supernovae with central engines: hydrodynamics simulations with Monte Carlo post-processing

A long-lived central engine embedded in expanding supernova ejecta can alter the dynamics and observational signatures of the event, producing an unusually luminous, energetic, and/or rapidly evolving transient. We use 2D hydrodynamics simulations to study the effect of a central energy source, varying the amount, rate, and isotropy of the energy deposition. We post-process the results with a time-dependent Monte Carlo radiation transport code to extract observational signatures. The engine excavates a bubble at the centre of the ejecta, which becomes Rayleigh–Taylor unstable. Sufficiently powerful engines are able to break through the edge of the bubble and accelerate, shred, and compositionally mix the entire ejecta. The breakout of the engine-driven wind occurs at distinct rupture points, and the outflowing high-velocity gas may eventually give rise to radio emission. The dynamical impact of the engine leads to faster rising optical light curves, with photon escape facilitated by the faster expansion of the ejecta and the opening of low-density channels. For models with strong engines, the spectra are initially hot and featureless, but later evolve to resemble those of broad-line Ic supernovae. Under certain conditions, line emission from ionized, low-velocity material near the centre of the ejecta may be able to escape and produce narrow emission similar to that seen in interacting supernovae. We discuss how variability in the engine energy reservoir and injection rate could give rise to a heterogeneous set of events spanning multiple observational classes, including the fast blue optical transients, broad-line Ic supernovae, and superluminous supernovae.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2018

Numerical Prediction of Cyclic Variability in a Spark Ignition Engine Using a Parallel Large Eddy Simulation Approach

Cycle-to-cycle variability (CCV) is detrimental to IC engine operation and can lead to partial burn, misfire, and knock. Predicting CCV numerically is extremely challenging due to two key reasons. First, high-fidelity methods such as large eddy simulation (LES) are required to accurately resolve the in-cylinder turbulent flow field both spatially and temporally. Second, CCV is experienced over long timescales and hence the simulations need to be performed for hundreds of consecutive cycles. Ameen et al. (2017, "Parallel Methodology to Capture Cyclic Variability in Motored Engines,"Int. J. Engine Res., 18(4), pp. 366-377.) developed a parallel perturbation model (PPM) approach to dissociate this long time-scale problem into several shorter time-scale problems. This strategy was demonstrated for motored engine and it was shown that the mean and variance of the in-cylinder flow field was captured reasonably well by this approach. In the present study, this PPM approach is extended to simulate the CCV in a fired port-fuel injected (PFI) spark ignition (SI) engine. The predictions from this approach are also shown to be similar to the consecutive LES cycles. It is shown that the parallel approach is able to predict the coefficient of variation (COV) of the in-cylinder pressure and burn raterelated parameters with sufficient accuracy, and is also able to predict the qualitative trends in CCV with changing operating conditions. It is shown that this new approach is able to give accurate predictions of the CCV in fired engines in less than one-tenth of the time required for the conventional approach of simulating consecutive engine cycles.

Ameen, Muhsin M.↗
DOE OSTI2017

Genome Stability in Engineered Strains of the Extremely Thermophilic Lignocellulose-Degrading Bacterium Caldicellulosiruptor bescii

Caldicellulosiruptor bescii is the most thermophilic cellulose degrader known and is of great interest because of its ability to degrade nonpretreated plant biomass. For biotechnological applications, an efficient genetic system is required to engineer it to convert plant biomass into desired products. To date, two different genetically tractable lineages of C. bescii strains have been generated. The first (JWCB005) is based on a random deletion within the pyrimidine biosynthesis genes pyrFA , and the second (MACB1018) is based on the targeted deletion of pyrE , making use of a kanamycin resistance marker. Importantly, an active insertion element, IS Cbe4 , was discovered in C. bescii when it disrupted the gene for lactate dehydrogenase ( ldh ) in strain JWCB018, constructed in the JWCB005 background. Additional instances of IS Cbe4 movement in other strains of this lineage are presented herein. These observations raise concerns about the genetic stability of such strains and their use as metabolic engineering platforms. In order to investigate genome stability in engineered strains of C. bescii from the two lineages, genome sequencing and Southern blot analyses were performed. The evidence presented shows a dramatic increase in the number of single nucleotide polymorphisms, insertions/deletions, and IS Cbe4 elements within the genome of JWCB005, leading to massive genome rearrangements in its daughter strain, JWCB018. Such dramatic effects were not evident in the newer MACB1018 lineage, indicating that JWCB005 and its daughter strains are not suitable for metabolic engineering purposes in C. bescii . Furthermore, a facile approach for assessing genomic stability in C. bescii has been established. Caldicellulosiruptor bescii is a cellulolytic extremely thermophilic bacterium of great interest for metabolic engineering efforts geared toward lignocellulosic biofuel and bio-based chemical production. Genetic technology in C. bescii has led to the development of two uracil auxotrophic genetic background strains for metabolic engineering. We show that strains derived from the genetic background containing a random deletion in uracil biosynthesis genes ( pyrFA ) have a dramatic increase in the number of single nucleotide polymorphisms, insertions/deletions, and IS Cbe4 insertion elements in their genomes compared to the wild type. At least one daughter strain of this lineage also contains large-scale genome rearrangements that are flanked by these IS Cbe4 elements. Finally, in contrast, strains developed from the second background strain developed using a targeted deletion strategy of the uracil biosynthetic gene pyrE have a stable genome structure, making them preferable for future metabolic engineering studies.

59 BASIC BIOLOGICAL SCIENCES↗