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At least 559 records · Page 31

Generative design of de novo proteins based on secondary-structure constraints using an attention-based diffusion model

We report two generative deep-learning models that predict amino acid sequences and 3D protein structures on the basis of secondary-structure design objectives via either the overall content or the per-residue structure. Both models are robust regarding imperfect inputs and offer de novo design capacity because they can discover new protein sequences not yet discovered from natural mechanisms or systems. The residue-level secondary-structure design model generally yields higher accuracy and more diverse sequences. These findings suggest unexplored opportunities for protein designs and functional outcomes within the vast amino acid sequences beyond known proteins. Our models, based on an attention-based diffusion model and trained on a dataset extracted from experimentally known 3D protein structures, offer numerous downstream applications in the conditional generative design of various biological or engineering systems. Future work could include additional conditioning and an exploration of other functional properties of the generated proteins for various properties beyond structural objectives.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Recurrent neural network-based multiaxial plasticity model with regularization for physics-informed constraints

We report a recurrent neural network (RNN) based model is developed as a surrogate to predict nonlinear plastic response under multiaxial loading. The RNN-based model is trained and tested on stress versus strain curves generated using a numerical solution based on the classical radial return method. Besides simply learning the basic constitutive relationship, a novel approach is taken to enforce certain physical conditions. Specifically, regularization is employed to maintain non-negative plastic power density throughout the loading history thereby ensuring monotonically increasing plastic work and thermodynamic consistency. Enforcing physics in this manner permits coupling of the data-driven RNN approach with physics-based knowledge and laws. This has the effect of reducing the necessary amount of data and ensuring known physical laws are not violated. Since, once trained, the model need not perform the expensive task of solving nonlinear equations, its efficiency is orders of magnitude greater than its numerical counterpart. The RNN-based model has been trained on varied sets of data and the accuracy on test datasets validated. The developed model is general and robust and has widespread application such as in the simulation of metal forming, large scale plasticity, and part life prediction.

42 ENGINEERING↗

Surrogate-driven design optimization with uncertainty constraints in Monte Carlo simulations

In multi-objective design tasks, the computational cost increases rapidly when high-fidelity simulations are used to evaluate objective functions. Surrogate models help mitigate this cost by approximating the simulation output, simplifying the design process. However, under high uncertainty, surrogate models trained on noisy data can produce inaccurate predictions, as their performance depends heavily on the quality of training data. This study investigates the impact of data uncertainty on two multi-objective design problems modelled using Monte Carlo transport simulations: a neutron moderator and an ion-to-neutron converter. For each, a grid search was performed using five different tally uncertainty levels to generate training data for neural network surrogate models. These models were then optimized using NSGA-III. The recovered Pareto-fronts were analyzed across uncertainty levels: in the moderator problem, normalized hypervolume dropped from 0.886 at 1.0% uncertainty to 0.748 at 10% uncertainty, while in the converter problem it remained near 0.50 for all cases. Average simulation times were also compared to evaluate the trade-off between accuracy and computational cost. Results show that the influence of simulation uncertainty is strongly problem-dependent. In the neutron moderator case, higher uncertainties led to exaggerated objective sensitivities and distorted Pareto-fronts, reducing normalized hypervolume. In contrast, the ion-to-neutron converter task was less affected—low-fidelity simulations produced results similar to those from high-fidelity data. These findings suggest that a fixed-fidelity approach is not optimal. Surrogate models can recover the Pareto-front under noisy conditions, and multi-fidelity studies help identify suitable uncertainty levels for each problem to balance efficiency and accuracy.

07 ISOTOPE AND RADIATION SOURCES↗

Migration and accumulation of hydrous mantle incipient melt in the Earth's asthenosphere: Constraints from in-situ falling sphere viscometry measurements

The Earth's oceanic lithosphere-asthenosphere boundary (LAB) is marked by a notable decrease in seismic wave velocities and an increase in attenuation. This phenomenon is likely attributed to the accumulation of partial melt at the top of the asthenosphere. Nevertheless, the process involving the upward migration and aggregation of low-degree partial melts, highly likely to be mantle incipient melts in the asthenosphere, remains underexplored. Viscosity is a key factor controlling the flow of melts, thus in this study, we used In-situ X-ray falling sphere viscometry experiments to determine the viscosity of the mantle incipient melt containing 1.8–4.0 wt.% water at 1.5–6 GPa and 2100 K. We found that water and pressure can effectively decrease the viscosity of the mantle incipient melt. Therefore, the mantle incipient melts are highly mobile with a high segregation velocity in the deeper part of the asthenosphere. However, during ascent, their mobility diminishes due to an increase in viscosity and a decrease in water content. In conclusion, these mechanisms potentially contribute to the accumulation of partial melt at the top of the asthenosphere.

58 GEOSCIENCES↗

Water and heat: New constraints on the evolution of the CV chondrite parent body

This paper focuses on the post-accretion history of CV3 chondrites, through a combination of petrographic and mineralogical characterization, magnetic measurements, spectral (Raman and Infrared) and thermo-gravimetric analysis of 31 meteorites (including 7 falls, 21 Antarctic and 3 non-Antarctic finds) spanning a wide metamorphic range. We classify the 21 Antarctic chondrites and the Bukhara fall into the CV Red , CV OxA , and CV OxB subgroups. We establish quantitative parameters relevant for this sub-classification. In comparison to CV Ox , CV Red chondrites are characterized by (i) a lower abundance of matrix, (ii) a higher abundance of metal, (iii) the presence of Ni-poor sulfides. In comparison to CV OxB , CV OxA are characterized by (i) similar matrix abundance, (ii) a higher abundance of metal, (iii) the presence of metal almost exclusively under the form of awaruite, (iv) lower Ni content of sulfides, (v) lower magnetic susceptibility and saturation remanence. In this work, both CV Ox (CV OxA and CV OxB ) and CV Red experienced aqueous alteration, and contain oxyhydroxides and phyllosilicates. We show that the abundance of these hydrated secondary minerals observed today in individual CV chondrites decreases with their peak metamorphic temperature. This is interpreted either as partial dehydration of these secondary minerals or limited hydration due to the rapid exhaustion of the water reservoir during parent body thermal metamorphism. Moreover, the lower abundance of oxyhydroxides (that have a lower thermal stability than phyllosilicates and may in large part postdate the peak of thermal metamorphism) in more metamorphosed CV chondrites is interpreted as lower availability of aqueous fluids during retrograde metamorphism in these meteorites. Lastly, we show that in comparison to CV OxB , CV OxA are systematically (i) more metamorphosed, (ii) less hydrated, (iii) depleted in ferromagnetic minerals, (iv) but enriched in metal in the form of secondary awaruite. CV OxA may be thermally metamorphosed CV OxB . CV Red are significantly different from CV Ox (matrix abundances, alteration products, opaque minerals), but span the same wide metamorphic range. This could be indicative of a laterally heterogeneous CV parent body, or suggest the existence of distinct parent bodies for CV Ox and CV Red chondrites.

79 ASTRONOMY AND ASTROPHYSICS↗

Mineralogical and isotopic constraints on early, high-temperature events and reservoirs recorded in the interior of a Type B Ca-Al-rich inclusion from the reduced CV3 chondrite Vigarano

A coordinated mineralogical and oxygen and Al-Mg isotopic study of a Type B Ca-Al-rich inclusion (CAI) from the reduced CV3 chondrite Vigarano was carried out using electron microprobe analysis, transmission electron microscopy, and secondary ion mass spectrometry. This CAI, a once molten igneous object, shows heterogeneous oxygen isotopic compositions among its constituent mineral phases. Spinel is uniformly 16 O-rich with Δ 17 O ≤ −23 ‰. The Δ 17 O values of Al,Ti-diopside in the CAI core range from −11 ‰ to −18 ‰, which are positively correlated with its TiO 2 contents, whereas diopside in the Wark–Lovering (WL) rim is 16 O-rich with Δ 17 O = −23 ‰. Melilite in the CAI mantle shows Δ 17 O values ≤ −10 ‰ only when Åk <15 but becomes more 16 O-poor (Δ 17 O = −3 ‰ to −9 ‰) when Åk >15 . These correlated chemical and oxygen isotopic variations were likely established during crystallization of melilite and Al,Ti-diopside from a partial melt, while spinel preserves the original 16 O-rich composition of the CAI precursor. We infer that a partial melt was isotopically evolving from 16 O-rich to 16 O-poor during melilite crystallization, then back to 16 O-rich during Al,Ti-diopside crystallization via exchange with different gas reservoirs of 16 O-poor and 16 O-rich compositions during heating event(s). Our Al-Mg isotopic measurements of the CAI core and mantle define a single isochron with an inferred initial 26 Al/ 27 Al ratio of (4.93 ± 0.18) × 10 −5 , indistinguishable from that of the WL rim. This indicates that multiple high-temperature events and oxygen isotope exchange with isotopically distinct gas reservoirs occurred rapidly during the CAI formation.

Al-Mg isotopic systematic↗

Redesigning capacity market to include flexibility via ramp constraints in high-renewable penetrated system

Capacity markets can co-exist alongside the energy and ancillary markets to ensure the medium-term and long-term supply adequacy by remunerating the generation resources for their availability. With the substantially increasing deployment of renewable generation, the system needs more flexibility to quickly mitigate the variability and uncertainty caused by the renewable generation. However, the present capacity market model does not differentiate the flexibility of generating units, so it might not give appropriate pricing signals to more flexible units that are usually more expensive. This is particularly important considering the increasing penetration levels of renewable generation on the electric grid, which increases the need for flexible units. This paper proposes a novel capacity market model considering flexibility requirement (FR) under the high penetration levels of renewable generation. Therefore, the proposed model can give the market-clearing price (MCP) for not only peak load generation capacity but also flexibility requirement. Thus, flexible units will tend to receive more economic incentives than non-flexible units. In the case studies, the profitability of different generation resources under the proposed capacity market model is analyzed and compared to the present capacity market model. The results show that the proposed method can maintain system reliability with regard to both peak load and flexibility requirement efficiently.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Gradient microstructure induced shear band constraint, delocalization, and delayed failure in CuZr nanoglasses

The mechanical properties of metallic glasses (MGs) can be significantly tuned by introducing a nanoscale glass-glass interface microstructure. Here, we design three types of Cu 64 Zr 36 MG seamless gradient microstructures by combining glassy grain sizes from 3 to 15 nm. We perform tensile loading molecular dynamics simulations on the named gradient nanoglasses to characterize their mechanical behavior. In all cases, results indicate the generation of gradient plasticity following the gradient in grain size, i.e. local plasticity increases from large to small grain size regions. Loading parallel to the gradient direction results in initial broad necking followed by catastrophic failure. In contrast, loading perpendicular to the gradient direction results in diffused shear band propagation from large to small grain size regions, delaying the generation of a dominant shear band and further delocalizing plastic deformation. In conclusion, the results demonstrate the synergistic effects generated by heterogeneous gradient designs in the mechanical behavior of metallic glasses.

36 MATERIALS SCIENCE↗