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DOE OSTI2024

Shock compression experiments using the DiPOLE 100-X laser on the high energy density instrument at the European x-ray free electron laser: Quantitative structural analysis of liquid Sn

X-ray free electron laser (XFEL) sources coupled to high-power laser systems offer an avenue to study the structural dynamics of materials at extreme pressures and temperatures. The recent commissioning of the DiPOLE 100-X laser on the high energy density (HED) instrument at the European XFEL represents the state-of-the-art in combining x-ray diffraction with laser compression, allowing for compressed materials to be probed in unprecedented detail. Here, we report quantitative structural measurements of molten Sn compressed to 85(5) GPa and ~3500 K. The capabilities of the HED instrument enable liquid density measurements with an uncertainty of ~1% at conditions which are extremely challenging to reach via static compression methods. We discuss best practices for conducting liquid diffraction dynamic compression experiments and the necessary intensity corrections which allow for accurate quantitative analysis. We also provide a polyimide ablation pressure vs input laser energy for the DiPOLE 100-X drive laser which will serve future users of the HED instrument.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2018

About a method for compressing X-ray computed microtomography data

The management of scientific data is of high importance especially for experimental techniques that produce big data volumes. Such a technique is x-ray computed tomography (CT) and its community has introduced advanced data formats which allow for better management of experimental data. Rather than the organization of the data and the associated meta-data, the main topic on this work is data compression and its applicability to experimental data collected from a synchrotron-based CT beamline at the Elettra-Sincrotrone Trieste facility (Italy) and studies images acquired from various types of samples. This study covers parallel beam geometry, but it could be easily extended to a cone-beam one. The reconstruction workflow used is the one currently in operation at the beamline. Contrary to standard image compression studies, this manuscript proposes a systematic framework and workflow for the critical examination of different compression techniques and does so by applying it to experimental data. Beyond the methodology framework, this study presents and examines the use of JPEG-XR in combination with HDF5 and TIFF formats providing insights and strategies on data compression and image quality issues that can be used and implemented at other synchrotron facilities and laboratory systems. In conclusion, projection data compression using JPEG-XR appears as a promising, efficient method to reduce data file size and thus to facilitate data handling and image reconstruction

data compression↗

DOE OSTI2024

Investigation of fast and efficient lossless compression algorithms for macromolecular crystallography experiments

Structural biology experiments benefit significantly from state-of-the-art synchrotron data collection. One can acquire macromolecular crystallography (MX) diffraction data on large-area photon-counting pixel-array detectors at framing rates exceeding 1000 frames per second, using 200 Gbps network connectivity, or higher when available. In extreme cases this represents a raw data throughput of about 25 GB s −1 , which is nearly impossible to deliver at reasonable cost without compression. Our field has used lossless compression for decades to make such data collection manageable. Many MX beamlines are now fitted with DECTRIS Eiger detectors, all of which are delivered with optimized compression algorithms by default, and they perform well with current framing rates and typical diffraction data. However, better lossless compression algorithms have been developed and are now available to the research community. Here one of the latest and most promising lossless compression algorithms is investigated on a variety of diffraction data like those routinely acquired at state-of-the-art MX beamlines.

36 MATERIALS SCIENCE↗

DOE OSTI2022

OptZConfig: Efficient Parallel Optimization of Lossy Compression Configuration

Lossless compressors have very low compression ratios that do not meet the needs of today's large-scale scientific applications that produce vast volumes of data. Error-bounded lossy compression (EBLC) is considered a critical technique for the success of scientific research. Although EBLC allows users to set an error bound for the compression, users have been unable to specify the requirements on the compression quality, limiting practical use. Our contributions are: (1) We formulate the problem of configuring EBLC to preserve a user-defined metric as an optimization problem. This allows many classes of new metrics to be preserved, which improves over current practices. (2) We present a framework, OptZConfig, that can adapt to improvements in the search algorithm, compressor, and metrics with minimal changes, enabling future advancements in this area. (3) We demonstrate the advantages of our approach against the leading methods to configure compressors to preserve specific metrics. Here, our approach improves compression ratios against a specialized compressor by up to 3 x, has a 56x speedup over FRaZ, 1000x speedup over MGARD-QOI post tuning, and 110x speedup over systematic approaches which had not been bounded by compressors before.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

TopoSZ: Preserving Topology in Error-Bounded Lossy Compression

Existing error-bounded lossy compression techniques control the pointwise error during compression to guarantee the integrity of the decompressed data. However, they typically do not explicitly preserve the topological features in data. When performing post hoc analysis with decompressed data using topological methods, preserving topology in the compression process to obtain topologically consistent and correct scientific insights is desirable. In this paper, we introduce TopoSZ, an error-bounded lossy compression method that preserves the topological features in 2D and 3D scalar fields. Specifically, we aim to preserve the types and locations of local extrema as well as the level set relations among critical points captured by contour trees in the decompressed data. The main idea is to derive topological constraints from contour-tree-induced segmentation from the data domain, and incorporate such constraints with a customized error-controlled quantization strategy from the SZ compressor (version 1.4). In conclusion, our method allows users to control the pointwise error and the loss of topological features during the compression process with a global error bound and a persistence threshold.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2015

Simple model of the indirect compression of targets under conditions close to the national ignition facility at an energy of 1.5 MJ

The possibility of the analysis and interpretation of the reported experiments with the megajoule National Ignition Facility (NIF) laser on the compression of capsules in indirect-irradiation targets by means of the one-dimensional RADIAN program in the spherical geometry has been studied. The problem of the energy balance in a target and the determination of the laser energy that should be used in the spherical model of the target has been considered. The results of action of pulses differing in energy and time profile (“low-foot” and “high-foot” regimes) have been analyzed. The parameters of the compression of targets with a high-density carbon ablator have been obtained. The results of the simulations are in satisfactory agreement with the measurements and correspond to the range of the observed parameters. The set of compared results can be expanded, in particular, for a more detailed determination of the parameters of a target near the maximum compression of the capsule. The physical foundation of the possibility of using the one-dimensional description is the necessity of the closeness of the last stage of the compression of the capsule to a one-dimensional process. The one-dimensional simulation of the compression of the capsule can be useful in establishing the boundary behind which two-dimensional and three-dimensional simulation should be used.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2017

Effect of spatial nonuniformity of heating on compression and burning of a thermonuclear target under direct multibeam irradiation by a megajoule laser pulse

Direct-drive fusion targets are considered at present as an alternative to targets of indirect compression at a laser energy level of about 2 MJ. In this approach, the symmetry of compression and ignition of thermonuclear fuel play the major role. We report on the results of theoretical investigation of compression and burning of spherical direct-drive targets in the conditions of spatial nonuniformity of heating associated with a shift of the target from the beam center of focusing and possible laser radiation energy disbalance in the beams. The investigation involves numerous calculations based on a complex of 1D and 2D codes RAPID, SEND (for determining the target illumination and the dynamics of absorption), DIANA, and NUT (1D and multidimensional hydrodynamics of compression and burning of targets). The target under investigation had the form of a two-layer shell (ablator made of inertial material CH and DT ice) filled with DT gas. We have determined the range of admissible variation of compression and combustion parameters of the target depending on the variation of the spatial nonuniformity of its heating by a multibeam laser system. It has been shown that low-mode (long-wavelength) perturbations deteriorate the characteristics of the central region due to less effective conversion of the kinetic energy of the target shell into the internal energy of the center. Local initiation of burning is also observed in off-center regions of the target in the case of substantial asymmetry of irradiation. In this case, burning is not spread over the entire volume of the DT fuel as a rule, which considerably reduces the thermonuclear yield as compared to that in the case of spherical symmetry and central ignition.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2017

Quasi-isentropic compressibility of a strongly nonideal deuterium plasma at pressures of up to 5500 GPa: Nonideality and degeneracy effects

We report on the experimental results on the quasi-isentropic compressibility of a strongly nonideal deuterium plasma that have been obtained on setups of cylindrical and spherical geometries in the pressure range of up to P ≈ 5500 GPa. We describe the characteristics of experimental setups, as well as the methods for the diagnostics and interpretation of the experimental results. The trajectory of metal shells that compress the deuterium plasma was detected using powerful pulsed X-ray sources with a maximal electron energy of up to 60 MeV. The values of the plasma density, which varied from ρ ≈ 0.8 g/cm{sup 3} to ρ ≈ 6 g/cm{sup 3}, which corresponds to pressure P ≈ 5500 GPa (55 Mbar), were determined from the measured value of the shell radius at the instant that it was stopped. The pressure of the compressed plasma was determined using gasdynamic calculations taking into account the actual characteristics of the experimental setups. We have obtained a strongly compressed deuterium plasma in which electron degeneracy effects under the conditions of strong interparticle interaction are significant. The experimental results have been compared with the theoretical models of a strongly nonideal partly degenerate plasma. We have obtained experimental confirmation of the plasma phase transition in the pressure range near 150 GPa (1.5 Mbar), which is in keeping with the conclusion concerning anomaly in the compressibility of the deuterium plasma drawn in [1].

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2023

Fast 2D Bicephalous Convolutional Autoencoder for Compressing 3D Time Projection Chamber Data

High-energy large-scale particle colliders produce data at high speed in the order of 1 terabytes per second in nuclear physics and petabytes per second in high energy physics. Developing real-time data compression algorithms to reduce such data at high throughput to fit permanent storage has drawn increasing attention. Specifically, at the newly constructed sPHENIX experiment at the Relativistic Heavy Ion Collider (RHIC), a time projection chamber is used as the main tracking detector, which records particle trajectories in a volume of three-dimensional (3D) cylinder. The resulting data are usually very sparse with occupancy around 10.8%. Such sparsity presents a challenge to conventional learning-free lossy compression algorithms, such as SZ, ZFP, and MGARD. The 3D convolutional neural network (CNN)-based approach, Bicephalous Convolutional Autoencoder (BCAE), outperforms traditional methods both in compression rate and reconstruction accuracy. BCAE can also utilize the computation power of graphical processing units suitable for deployment in a modern heterogeneous highperformance computing environment. This work introduces two BCAE variants: BCAE++ and BCAE-2D. BCAE++ achieves a 15% better compression ratio and a 77% better reconstruction accuracy measured in mean absolute error compared with BCAE. BCAE-2D treats the radial direction as the channel dimension of an image, resulting in a 3× speedup in compression throughput. In addition, we demonstrate an unbalanced autoencoder with a larger decoder can improve reconstruction accuracy without significantly sacrificing throughput. Lastly, we observe both the BCAE++ and BCAE-2D can benefit more from using half-precision mode in throughput (76 - 79% increase) without loss in reconstruction accuracy. The source code and links to data and pretrained models can be found at https://github.com/BNL-DAQ-LDRD/NeuralCompression_v2

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2025

What to Support When You’re Compressing

Over the last nearly 20 years, lossy compression has become an essential aspect of HPC applications’ data pipelines, allowing them to overcome limitations in storage capacity and bandwidth and, in some cases, increase computational throughput and capacity. However, with the adoption of lossy compression comes the requirement to assess and control the impact lossy compression has on scientific outcomes. In this work, we take a major step forward in describing the state of practice and by characterizing workloads. We examine applications’ needs and compressors’ capabilities across 9 different supercomputing application domains. We present 24 takeaways that provide best practices for applications, operational impacts for facilities achieving compressed data, and gaps in application needs not addressed by production compressors that point towards opportunities for future compression research.

Error-Bounded Lossy Compression↗

DOE OSTI2019

Use cases of lossy compression for floating-point data in scientific data sets

Architectural and technological trends of systems used for scientific computing call for a significant reduction of scientific data sets that are composed mainly of floating-point data. Here, this article surveys and presents experimental results of currently identified use cases of generic lossy compression to address the different limitations of scientific computing systems. The article shows from a collection of experiments run on parallel systems of a leadership facility that lossy data compression not only can reduce the footprint of scientific data sets on storage but also can reduce I/O and checkpoint/restart times, accelerate computation, and even allow significantly larger problems to be run than without lossy compression. In conclusion, these results suggest that lossy compression will become an important technology in many aspects of high performance scientific computing. Because the constraints for each use case are different and often conflicting, this collection of results also indicates the need for more specialization of the compression pipelines.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2016

Evolution and current understanding of physicochemical characterization of particulate matter from reactivity controlled compression ignition combustion on a multicylinder light-duty engine

Low-temperature compression ignition combustion can result in nearly smokeless combustion, as indicated by a smoke meter or other forms of soot measurement that rely on absorbance due to elemental carbon content. Highly premixed low-temperature combustion modes do not form particulate matter in the traditional pathways seen with conventional diesel combustion. Previous research into reactivity controlled compression ignition particulate matter has shown, despite a near zero smoke number, significant mass can be collected on filter media used for particulate matter certification measurement. In addition, particulate matter size distributions reveal that a fraction of the particles survive heated double-dilution conditions. This paper summarizes research completed at Oak Ridge National Laboratory to date on characterizing the nature, chemistry and aftertreatment considerations of reactivity controlled compression ignition particulate matter and presents new research highlighting the importance of injection strategy and fuel composition on reactivity controlled compression ignition particulate matter formation. Particle size measurements and the transmission electron microscopy results do show the presence of soot particles; however, the elemental carbon fraction was, in many cases, within the uncertainty of the thermal–optical measurement. Particulate matter emitted during reactivity controlled compression ignition operation was also collected with a novel sampling technique and analyzed by thermal desorption or pyrolysis gas chromatography mass spectroscopy. Particulate matter speciation results indicated that the high boiling range of diesel hydrocarbons was likely responsible for the particulate matter mass captured on the filter media. Finally, to investigate potential fuel chemistry effects, either ethanol or biodiesel were incorporated to assess whether oxygenated fuels may enhance particle emission reduction.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2023

Experimental measurements of soot formation in fuel-rich homogeneous mixtures using an optical rapid compression machine

Advanced combustion strategies are necessary for the use of more environmentally sustainable fuels than traditional diesel. Alcohol fuels and alcohol/gasoline blends are of particular interest as they are readily available in the marketplace. Heavy-duty engines typically use compression ignited, conventional diesel mixing controlled combustion. Mixing controlled combustion features a non-premixed diffusion flame with a wide range of local equivalence ratios, leading to potentially high rates of soot formation. This work studies the sooting behavior of iso-octane and ethanol as a function of equivalence ratio. Measurements are carried out in a rapid compression machine (RCM) and are reported for pre-ignition conditions of 10–30 bar and temperatures of 650–800 K. Theoretical equilibrium and bulk gas temperatures are calculated for both fuels. These data are used to identify the critical equivalence ratio, the lowest equivalence ratio where soot is detected with a single-pass laser extinction diagnostic. The critical equivalence ratio for iso-octane varies between 1.82 and 1.77 for compressed pressures of 10 and 20 bar, respectively. Ethanol, sometimes considered sootless, had a critical equivalence ratio between 2.37 and 2.12 for compressed pressures of 20 and 30 bar, respectively. When characterizing soot formation by oxygenated equivalence ratio, the critical equivalence ratios for ethanol approach those of iso-octane. This suggests the oxygenated nature of alcohol fuels reduces sooting tendency, but other factors such as fuel molecular structure and morphology may play a role. It was observed that ethanol will form soot at equivalence ratios only slightly higher than iso-octane, which could have implications in mixing controlled combustion. It was seen for both fuels that soot formation is pressure sensitive, with the critical equivalence ratio being inversely proportional to compressed pressure and the rate of soot formation. Future work will investigate the sooting behavior of gasoline/ethanol blends.

02 PETROLEUM↗

DOE OSTI2017

High-energy sub-phonon lifetime pulse compression by stimulated Brillouin scattering in liquids

Multi-Joule level stimulated Brillouin scattering (SBS) pulse compression below the acoustic phonon lifetime is demonstrated with a energy-scalable generator-amplifier setup. Single-pass compression of pulses longer than 20τ B (τ B as phonon lifetime) to as short as 0.5τ B with ~100 mJ pulse energy is realized from the generator, by choosing the focusing length to match approximately with the full length at half maximum of the input Gaussian pulses. The interaction length is identified, both experimentally and numerically, as the key parameter in achieving sub-phonon lifetime pulse compression, with its main mechanism being the steepening of the Stokes pulse trailing edge via energy exchange process. After combining the generator with an amplifier that involves only collimated beams and serves as energy booster, the compression of 9 ns, 2 J pulses at 532 nm into 170 ps, 1.3 J per pulse is achieved in water, with very good stability in both pulse energy and duration. Furthermore, this work demonstrates for the first time the efficient high-energy SBS sub-phonon lifetime pulse compression, and paves a way to the reliable generation of sub-200 ps laser pulses with Joule-level energy.

74 ATOMIC AND MOLECULAR PHYSICS↗

DOE OSTI2016

A Comparison of Compressed Sensing and Sparse Recovery Algorithms Applied to Simulation Data

The move toward exascale computing for scientific simulations is placing new demands on compression techniques. It is expected that the I/O system will not be able to support the volume of data that is expected to be written out. To enable quantitative analysis and scientific discovery, we are interested in techniques that compress high-dimensional simulation data and can provide perfect or near-perfect reconstruction. In this paper, we explore the use of compressed sensing (CS) techniques to reduce the size of the data before they are written out. Using large-scale simulation data, we investigate how the sufficient sparsity condition and the contrast in the data affect the quality of reconstruction and the degree of compression. Also, we provide suggestions for the practical implementation of CS techniques and compare them with other sparse recovery methods. Finally, our results show that despite longer times for reconstruction, compressed sensing techniques can provide near perfect reconstruction over a range of data with varying sparsity.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2022

Illinois Compressed Air Energy Storage

Compressed Air Storage Energy (CAES) is one of the few mid- technology readiness level (TRL) energy storage technologies that can address the long-duration infrastructure needed for dealing with variable electric output from renewable energy sources and be reliable backup source for replacing natural gas during supply interruptions. In CAES the goal is to capture and store compressed air in subsurface sedimentary strata when off-peak power is available, or there is a need for grid balancing. The stored high-pressure air is returned to the surface and used to power turbines during reductions in either renewable energy or supply issues with fossil fuels. The Illinois CAES project evaluates the feasibility of capturing surplus electrical energy from renewable sources and off-peak energy at a fossil fuel power plant at the University of Illinois Urbana - Champaign (UIUC) campus. The UIUC Abbott Power Plant uses natural gas and coal to generate electricity (capacity: 35 MWe by coal and 49 MWe by NG). UIUC receives additional electricity from on campus solar farm, and off-campus wind farm. Also, UIUC offsets electricity usage by integrating geothermal energy systems into building heating Also, UIUC offsets steam, hot and chilled water usage by integrating geothermal energy systems into building heating and cooling systems. Furthermore, the two UIUC solar farms (Solar Farm 1 is 21 acres and Solar Farm 2 is 54 acres) to generate 4.68 megawatts (MW) and 12.1 MW, respectively. Campus receives 8.6% of the wind-generated electricity from the Rail Splitter Wind Farm. The project objectives were to design an integrated system to 1) capture surplus electrical energy from renewable sources and the Abbott Power Plant using a CAES system, 2) store both the compressed air and the thermal heat generated by compression in the subsurface as part of an adiabatic system, 3) simulate the movement of the air and heat in the subsurface, 4) recover the compressed air and stored thermal heat to rotate turbine generators during sustained interruption due to weather events or fossil fuel disruptions.

03 NATURAL GAS↗

DOE OSTI2023

X-ray Free Electron Laser Accelerator Lattice Design Using Laser-Assisted Bunch Compression

We report the start-to-end modeling of our accelerator lattice design employing a laser-assisted bunch compression (LABC) scheme in an X-ray free electron laser (XFEL), using the proposed Matter-Radiation Interactions in Extremes (MaRIE) XFEL parameters. The accelerator lattice utilized a two-stage bunch compression scheme, with the first bunch compressor performing a conventional bulk compression enhancing the beam current from 20 A to 500 A, at 750 MeV. The second bunch compression was achieved by modulating the beam immediately downstream of the first bunch compressor by a laser with 1-μm wavelength in a laser modulator, accelerating the beam to the final energy of 12 GeV, and compressing the individual 1-μm periods of the modulated beam into a sequence of microbunches with 3-kA current spikes by the second bunch compressor. The LABC architecture presented had been developed based on the scheme of enhanced self-amplified spontaneous emission (ESASE), but operated in a disparate regime of parameters. Enabled by the novel technology of the cryogenic normal conducting radiofrequency photoinjector, we investigated an electron beam with ultra-low emittance at the starting point of the lattice design. Our work aimed at mitigating the well-known beam instabilities to preserve the beam emittance and suppress the energy spread growth.

43 PARTICLE ACCELERATORS↗

DOE OSTI2022

Lossy checkpoint compression in full waveform inversion: a case study with ZFPv0.5.5 and the overthrust model

This paper proposes a new method that combines checkpointing methods with error-controlled lossy compression for large-scale high-performance full-waveform inversion (FWI), an inverse problem commonly used in geophysical exploration. This combination can significantly reduce data movement, allowing a reduction in run time as well as peak memory. In the exascale computing era, frequent data transfer (e.g., memory bandwidth, PCIe bandwidth for GPUs, or network) is the performance bottleneck rather than the peak FLOPS of the processing unit. Like many other adjoint-based optimization problems, FWI is costly in terms of the number of floating-point operations, large memory footprint during backpropagation, and data transfer overheads. Past work for adjoint methods has developed checkpointing methods that reduce the peak memory requirements during backpropagation at the cost of additional floating-point computations. Combining this traditional checkpointing with error-controlled lossy compression, we explore the three-way tradeoff between memory, precision, and time to solution. We investigate how approximation errors introduced by lossy compression of the forward solution impact the objective function gradient and final inverted solution. Empirical results from these numerical experiments indicate that high lossy-compression rates (compression factors ranging up to 100) have a relatively minor impact on convergence rates and the quality of the final solution.

58 GEOSCIENCES↗