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At least 541 records · Page 30

X-ray Absorption Spectroscopy and Neutron Scattering Data, Mineral Incubation Experiment, Walker Branch Watershed, TN (2020 - 2021)

Iron (Fe) (oxyhydr)oxides are well-recognized contributors to soil carbon (C) storage, but the effects of manganese (Mn) oxides on carbon storage and transformation are relatively unexplored. Here, the relative capacities of Fe and Mn oxides to bind and stabilize soil organic C were directly compared using an in-situ incubation experiment. Quartz sands coated with either poorly crystalline Mn(III/IV) oxides or Fe(III) oxides, or left uncoated, were buried in a temperate forest soil for up to one year. This data package contains processed data outputs of carbon near edge x-ray absorption fine structure spectroscopy (C NEXAFS), iron and manganese x-ray absorption near edge structure spectroscopy (XANES), and small angle neutron scattering (SANS) data collected for initial oxide-coated and uncoated quartz sands and for those buried in the temperate forest soil for 365 days.

Energy (eV)↗

Photosynthetic parameters and nutrient content of trees at the Panama crane sites.

This data package contains leaf chemistry and photosynthetic traits data from trees within the NGEE Tropics Parque Natural Metropolitano (PA-PNM) and Bosque Protector San Lorenzo (PA-SLZ) sites in Panama. Photosynthetic parameters including maximum photosynthesis, Vcmax, Jmax, and TPU, were calculated from A/Ci curves. Foliar nitrogen and phosphorus concentrations and leaf mass per unit leaf area of the leaves also were determined. The plants that were sampled were classified as to species, family, order, clade, and growth form (tree, liana, perennial herb, or other). Wood density of the tree and the source of that data also are included. Included in this data package is a zip file with a single Excel data file and CSV copies.

54 ENVIRONMENTAL SCIENCES↗

CO2 response (ACi) gas exchange, calculated Vcmax & Jmax parameters, Feb2016-May2016, PA-SLZ, PA-PNM: Panama

This data package contains CO2 response (ACi) gas exchange and fitted Vcmax and Jmax parameters measured on sunlit canopy trees within the NGEE Tropics sites Parque Natural Metropolitano (PA-PNM) and Bosque Protector San Lorenzo (PA-SLZ) in Panama. Measurements were taken on a monthly basis from February to May of 2016. This data was collected as part of the 2016 El Niño-Southern Oscillation (ENSO) campaign. Included in this data package are two Excel files with data (2016ENSO_Panama_ACi, 2016ENSO_Panama_Fitted_Vcmax_Jmax) and three Excel files with associated metadata. Also included is a Word document (Metadata_description_2016_ENSO_Panama) with details such as data collection methods, equipment used, and site information and a pdf (NGEE_Tropics_ENSO_Aci_Protocol_V2). See related datasets for further sample details, leaf water potential, LMA, leaf spectra, diurnal gas exchange and leaf chemistry. VERSION 2 update. The identification of a species from the PNM site has been corrected as follows: the identification of the tree initially identified as Pseudosamanea guachapele (ALBIED) has been revised to Albizia adinocephala (ALBIAD). The updated data package includes revised data, metadata and protocol documents updated to reflect this change.

54 ENVIRONMENTAL SCIENCES↗

Leaf sample detail, Feb2016-May2016, PA-SLZ, PA-PNM, PA-BCI: Panama

This data package contains details of the date, location, species and photographs of leaf samples collected on a monthly basis from Feb to May 2016 from Parque Natural Metropolitano (PA-PNM), Barro Colorado Island (PA-BCI) and Bosque Protector San Lorenzo (PA-SLZ) in Panama. Data from BCI only available for March. This data was collected as part of the 2016 El Niño-Southern Oscillation (ENSO) campaign. Included in this data package are an Excel file with data (2016ENSO_Panama_LeafSamples) and two Excel files with associated metadata. Sample photos are included in five zip files, organized by month and site. Also included is a Word document (Metadata_description_2016_ENSO_Panama) with details such as data collection methods, equipment used, and site information. Data to be used as a reference to linking related datasets including leaf water potential, leaf spectra, LMA, gas exchange and leaf chemistry (CHN, NSC). Most leaves were sampled from sunlit canopy trees. VERSION 2 update. The identification of a species from the PNM site has been corrected as follows: the identification of the tree initially identified as Pseudosamanea guachapele (ALBIED) has been revised to Albizia adinocephala (ALBIAD). The updated data package includes revised data, metadata and protocol documents updated to reflect this change.

54 ENVIRONMENTAL SCIENCES↗

Diurnal leaf gas exchange survey, Feb2016-May2016, PA-SLZ, PA-PNM: Panama

This data package contains the results of a diurnal leaf gas exchange survey measured on sunlit canopy trees within the NGEE Tropics sites Parque Natural Metropolitano (PA-PNM) and Bosque Protector San Lorenzo (PA-SLZ) in Panama. Measurements were taken on a monthly basis from February to May of 2016. This data was collected as part of the 2016 El Niño-Southern Oscillation (ENSO) campaign. Included in this data package are two Excel files with data (2016ENSO_Panama_DiurnalGasEx, 2016ENSO_Panama_AreaCorrections) and additional Excel files with associated metadata. Also included is a Word document (Metadata_description_2016_ENSO_Panama) with details such as data collection methods, equipment used, and site information. See related datasets for further sample details, leaf water potential, LMA, leaf spectra, other gas exchange and leaf chemistry. VERSION 2 update. The identification of a species from the PNM site has been corrected as follows: the identification of the tree initially identified as Pseudosamanea guachapele (ALBIED) has been revised to Albizia adinocephala (ALBIAD). The updated data package includes revised data, metadata and protocol documents updated to reflect this change.

54 ENVIRONMENTAL SCIENCES↗

Leaf mass area, Feb2016-May2016, PA-SLZ, PA-PNM, PA-BCI: Panama

This data package contains leaf mass data per unit area measured on a monthly basis from February to April, 2016, at the Bosque Protector San Lorenzo (PA-SLZ) and Parque Natural Metropolitano (PA-PNM) sites in Panama. Data from the Barro Colorado Island (PA-BCI) site are only available for March. This data was collected as part of the 2016 El Niño-Southern Oscillation (ENSO) campaign. Included in this data package are an Excel file with data (2016ENSO_Panama_LMA1) and two Excel files with associated metadata. Also included is a Word document (Metadata_description_2016_ENSO_Panama) with details such as data collection methods, equipment used, and site information. See related datasets for further sample details, leaf water potential, leaf spectra, gas exchange and leaf chemistry. VERSION 2 update. The identification of a species from the PNM site has been corrected as follows: the identification of the tree initially identified as Pseudosamanea guachapele (ALBIED) has been revised to Albizia adinocephala (ALBIAD). The updated data package includes revised data, metadata and protocol documents updated to reflect this change.

54 ENVIRONMENTAL SCIENCES↗

Leaf spectra, Feb2016-April2016, PA-SLZ, PA-PNM, PA-BCI: Panama

This data package contains leaf spectra data measured on a monthly basis from February to April, 2016. Measurements were taken at the Bosque Protector San Lorenzo (SLZ), Barro Colorado Island (BCI) and Parque Natural Metropolitano (PNM) NGEE Tropics sites in Panama. Data from the BCI site are only available for March, 2016. Within the attached zip file are PDF manuals for instruments used, a guide to data collection protocol, and metadata files, including a PDF containing metadata for the 2016 ENSO gas exchange campaign. Also included is an additional zip file "2016_ENSO_BNL_Leaf_Spectra_Archive.zip" with data in .csv format organized by site. This data was collected as part of the 2016 ENSO campaign. See related datasets (existing and future) for further sample details, leaf water potential data, LMA, and gas exchange and leaf chemistry data. VERSION 2 update. The identification of a species from the PNM site has been corrected as follows: the identification of the tree initially identified as Pseudosamanea guachapele (ALBIED) has been revised to Albizia adinocephala (ALBIAD). The updated data package includes revised data, metadata and protocol documents updated to reflect this change.

54 ENVIRONMENTAL SCIENCES↗

Leaf water potential, Feb2016-May2016, PA-SLZ, PA-PNM, PA-BCI: Panama

This data package contains leaf water potential data from the Barro Colorado Island (BCI), Parque Natural Metropolitano (PNM), and Bosque Protector San Lorenzo (SLZ) NGEE Tropics field sites in Panama. Pre-dawn and diurnal leaf water potential were measured on a monthly basis from February to May 2016 at SLZ and PNM. Data from BCI are only available for the month of March. This data was collected as part of the 2016 El Niño-Southern Oscillation (ENSO) campaign. Included in the attached zip file are data and metadata folders. The single data file "2016ENSO_Panama_LWP" has been provided in both Excel and CSV formats for usability purposes. The metadata file "Metadata_description_2016_ENSO_Panama" provides protocols, site descriptions, equipment information, and more, and has been provided in .docx and PDF file formats. See related datasets (existing and future) for further sample details, leaf spectra, leaf mass area (LMA), gas exchange and leaf chemistry data. VERSION 2 update. The identification of a species from the PNM site has been corrected as follows: the identification of the tree initially identified as Pseudosamanea guachapele (ALBIED) has been revised to Albizia adinocephala (ALBIAD). The updated data package includes revised data, metadata and protocol documents updated to reflect this change.

54 ENVIRONMENTAL SCIENCES↗

Panama tropical forest digital camera imagery for vegetation phenology, Dec2016-May2019, PA-SLZ, PA-PNM, PA-BCI

Tropical forest phenology monitoring undertaken by use of Wingscapes timelapse cameras (phenocams) at three tropical evergreen forests in Panama: San Lorenzo, Parque Natural Metropolitano, and Barro Colorado Island. Following installation in December 2016, images were acquired every 10 minutes from 10 am to 2 pm daily, ending in May 2019. A total of 37 cameras were mounted on towers and tree branches, and view sunlit canopy or understory forest as follows: PA-SLZ, 11 canopy, 14 understory; PA-PNM, 6 canopy, 2 understory, PA-BCI, 4 canopy (trees also monitored for sap flow). This data package contains a full data description, metadata, species identification guides and summary files showing example fields of view from each camera location as csv and pdf files. The data description provides instructions for download of the full resolution image files, and other summary data products stored on external servers.

54 ENVIRONMENTAL SCIENCES↗

Leaf-to-canopy spectral reflectance, February 2018, PA-SLZ: Panama

Canopy reflectance spectra of 37 trees were measured at the Smithsonian Tropical Research Institute (STRI) San Lorenzo Protected Area site (PA-SLZ), utilising the canopy access crane to access fully sunlit leaves. Data were recorded in the middle of the day, with 20–50 measurements for each tree. The canopy structure for each crown was captured using a digital camera. Leaf-level reflectance and leaf demographic composition (age class) was recorded in detail for a > 0.5 meter branch sampled from each canopy tree (corresponding to the position where canopy spectra were measured). This dataset includes processed canopy and leaf-level spectral measurements (*.xlsx), raw spectral data (Spectral Evolution PSR+, *.raw, *.sed), sample details (*.xlsx) and *.pdf summaries containing low resolution photographs of the measured canopies. Full resolution images are available in the related dataset, "Leaf-to-canopy spectral reflectance photographs, February 2018, PA-SLZ: Panama".

54 ENVIRONMENTAL SCIENCES↗

Leaf-to-canopy spectral reflectance photographs, Feb2018, PA-SLZ: Panama

Photographs of 37 tree canopies were taken at the Smithsonian Tropical Research Institute (STRI) San Lorenzo Protected Area site, utilising the canopy access crane to view tree crowns. Canopy photos were taken to capture canopy structural information to accompany matching canopy reflectance spectra. Canopy data were recorded in the middle of the day. This collection also includes photographs showing leaf-level detail of branches sampled from each tree, with the photo taken after the branch samples were removed from the trees. These full resolution canopy and branch sample photographs (*.jpg) accompany the dataset "Leaf-to-canopy spectral reflectance, February 2018, PA-SLZ: Panama". Refer to this companion dataset for full metadata, including sample and species information.

54 ENVIRONMENTAL SCIENCES↗

Leaf C and N content, Feb2016-May2016, PA-SLZ, PA-PNM, PA-BCI: Panama

This dataset contains carbon, hydrogen and nitrogen content data of 33 tree species collected from February to May 2016 at the NGEE-Tropics Bosque Protector San Lorenzo (PA-SLZ) and Parque Natural Metropolitano (PA-PNM) sites in Panama. Data from Barro Colorado Island (PA-BCI) is only available for March 2016. This data was collected as part of the 2016 ENSO campaign. See related datasets for further sample details, leaf water potential, leaf spectra, gas exchange and leaf mass per area (LMA). Most leaves were sampled from sunlit canopy trees. VERSION 2 update. The identification of a species from the PNM site has been corrected as follows: the identification of the tree initially identified as Pseudosamanea guachapele (ALBIED) has been revised to Albizia adinocephala (ALBIAD). The updated data package includes revised data, metadata and protocol documents updated to reflect this change.

54 ENVIRONMENTAL SCIENCES↗

Leaf reflectance, leaf transmittance and sky irradiance, at four sites in Panama, 2022

Paired leaf reflectance and transmittance data measured in Panama, at the Parque Natural Metropolitano (PNM), on Barro Colorado Island (BCI), at the San Lorenzo canopy crane site (SLZ), and in Gamboa, Panama from January to April 2022. Measurements were made on leaves from 57 different tree, shrub and liana species, from sunlit canopy and understory locations. Bark reflectance was also measured on the trunks of common tree species at the PNM and SLZ sites. Also included are irradiance measurements and leaf area index (LAI) from eight vertical profiles at PNM. The aim of these data was to refine our understanding of vertical trait and environmental variation in tropical forests, and to improve models which can predict leaf traits from leaf contact spectral measurements. All spectral data and metadata are presented in .csv files and complete instrument output are included in .zip folders. Protocol details are provided as pdf documents. In addition to spectral data described here, some of these samples were also used for measurement of leaf gas exchange, carbon and nitrogen content, and leaf mass per unit leaf area (LMA) these data can be cross linked using the unique sample ID and are provided in separate related data packages.

54 ENVIRONMENTAL SCIENCES↗

Leaf C and N content by leaf age, Feb2017, PA-SLZ: Panama

This dataset contains carbon, hydrogen and nitrogen content measurements of sunlit canopy leaves of Apeiba membranacea (APEIME), Guatteria dumetorum (GUATDU), Miconia borealis (MICOBO), Terminalia amazonia (TERMAM), Virola multiflora (VIROSP) and Vochysia ferruginea (VOCHFE) species. Data was collected from the NGEE-Tropics Bosque Protector San Lorenzo (PA-SLZ) site in Panama in February of 2017 as part of the 2017 Brookhaven National Lab–Smithsonian Tropical Research Institute leaf traits by age campaign. A PDF with full sapling protocol is included in this dataset, along with metadata files in Excel file format. Data is in both CSV (Panama2017_CHN.csv) and Excel file formats. See related datasets for further sample details, leaf spectra, sap flow, leaf water potential, leaf mass per area (LMA), and gas exchange measurements.

54 ENVIRONMENTAL SCIENCES↗

Sap flow data, Jan 2022-Dec 2022, Panama: PNM,BCI, and SLZ

Sap flow was monitored at three Panamanian sites: Parque Natural Metropolitano (PNM), Barro Colorado Island (BCI), and Bosque Protector San Lorenzo (SLZ), using a total of 54 G-20mm sap flow sensors. Raw output from the data logger connected to 54 sap flow sensors are converted from xxx.dat. to xxx.csv. files. The metadata file (E-field log_v1-1_PNM_BCI_SLZ_sapflow_2022.xls) has information on locations where the sensors were installed, and other installation/maintenance details. No data processing or QA/QC was done on the raw datasets except conversion of dat. files to csv. files. Processed datasets have been uploaded separately. Contact mizanur.rahman@pnnl.gov or nate.mcdowell@pnnl.gov if you need to use this dataset for additional information.

54 ENVIRONMENTAL SCIENCES↗

AmeriFlux US-Jo2 Jornada Experimental Range Mixed Shrubland

This is the AmeriFlux version of the carbon flux data for the site US-Jo2 Jornada Experimental Range Mixed Shrubland. Site Description - The study area is in a mixed shrub-dominated portion of the San Andres Mountain piedmont, along the southeastern boundary of the Jornada Experimental Range (JER) in southern New Mexico, USA. The JER was established in 1912 as a response of scientis and landowner to the shrub enchroachment and loss of grasses due to extended grazing during the late 1800s, fire and climate change. JER has been a NSF LTER site since 1981.The study site is a small watershed (4.67 ha) in an alluvial slope or bajada, with three major areas (north-, south- and west-facing hillslopes) with low to moderate slopes (∼0–6°) with a mean slope of 2.6°, while the channel banks and propagating channel heads have higher slopes (∼15–25°). The site is charactetized by a high bare soil coverage (∼66%), ∼28% of mixed shrubs coverage and a low coverage of grass (∼4%) and weeds (∼2%).

Vivoni, Enrique R.↗

AmeriFlux US-CMW Charleston Mesquite Woodland

This is the AmeriFlux version of the carbon flux data for the site US-CMW Charleston Mesquite Woodland. Site Description - Site is a riparian mesquite woodland located along an old alluvial terrace along the banks of the San Pedro River in southeastern Arizona. Site climate is semiarid with monsoonal (Jul-Sep) rainfall. The mesquite trees access groundwater from an alluvial aquifer recharged elsewhere. Site water balance is not closed and ET greatly exceeds precipitation. The understory grasses and forbs are rainfall dependent. This groundwater-dependent ecosystem is far more ebulliant and productive than the upland vegetation around it (shrublands and grasslands).

Scott, Russell↗

AmeriFlux US-Jo1 Jornada Experimental Range Bajada Site

This is the AmeriFlux version of the carbon flux data for the site US-Jo1 Jornada Experimental Range Bajada Site. Site Description - The Jornada Basin Experimental Range (JER) covers 783 km2 in the La Jornada del Muerto Plain of the northern Chihuahuan Desert and is located 20km of Las Cruces, NM. Extensive livestock grazing at the JER and througout the US Southwest was coincident with large-scale grassland deterioration and transition to shrubland begining in the 1800s. The JER was established n 1912 to investigate these rangeland changes and has since become a central location for understanding dryland ecology. This flux tower monitors CO2 and H2O dynamics in a representative shrubland on the piedmont slope (bajada) of the San Andreas mountains. The dominant shrubs are evergreen Larrea tridentata (Creosote) and winter-deciduous Prosopis glandulosa (Honey Mesquite). Other cover types include Flourensia cernua (tarbush) and patchy occurences of the grasses Muhlenbergia porteri (Bush Muhly) and Dasyochloa pulchella (Fluff Grass). The site is occasionally visited by stray domestic cattle, free-ranging introduced Oryx, and other native herbivores (Jack Rabbits, Desert Pronghorn). Soils at the site are Ustic Calciargids and parent material consists of limestone, other sedimentary rock, and some igneous rock. Virtual Site Visit: https://youtu.be/v1uJCKuicqs​

Tweedie, Craig↗