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At least 541 records · Page 30
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Disentangling Alzheimer’s disease neurodegeneration from typical brain ageing using machine learning

Abstract Neuroimaging biomarkers that distinguish between changes due to typical brain ageing and Alzheimer’s disease are valuable for determining how much each contributes to cognitive decline. Supervised machine learning models can derive multivariate patterns of brain change related to the two processes, including the Spatial Patterns of Atrophy for Recognition of Alzheimer’s Disease (SPARE-AD) and of Brain Aging (SPARE-BA) scores investigated herein. However, the substantial overlap between brain regions affected in the two processes confounds measuring them independently. We present a methodology, and associated results, towards disentangling the two. T1-weighted MRI scans of 4054 participants (48–95 years) with Alzheimer’s disease, mild cognitive impairment (MCI), or cognitively normal (CN) diagnoses from the Imaging-based coordinate SysTem for AGIng and NeurodeGenerative diseases (iSTAGING) consortium were analysed. Multiple sets of SPARE scores were investigated, in order to probe imaging signatures of certain clinically or molecularly defined sub-cohorts. First, a subset of clinical Alzheimer’s disease patients (n = 718) and age- and sex-matched CN adults (n = 718) were selected based purely on clinical diagnoses to train SPARE-BA1 (regression of age using CN individuals) and SPARE-AD1 (classification of CN versus Alzheimer’s disease) models. Second, analogous groups were selected based on clinical and molecular markers to train SPARE-BA2 and SPARE-AD2 models: amyloid-positive Alzheimer’s disease continuum group (n = 718; consisting of amyloid-positive Alzheimer’s disease, amyloid-positive MCI, amyloid- and tau-positive CN individuals) and amyloid-negative CN group (n = 718). Finally, the combined group of the Alzheimer’s disease continuum and amyloid-negative CN individuals was used to train SPARE-BA3 model, with the intention to estimate brain age regardless of Alzheimer’s disease-related brain changes. The disentangled SPARE models, SPARE-AD2 and SPARE-BA3, derived brain patterns that were more specific to the two types of brain changes. The correlation between the SPARE-BA Gap (SPARE-BA minus chronological age) and SPARE-AD was significantly reduced after the decoupling (r = 0.56–0.06). The correlation of disentangled SPARE-AD was non-inferior to amyloid- and tau-related measurements and to the number of APOE ε4 alleles but was lower to Alzheimer’s disease-related psychometric test scores, suggesting the contribution of advanced brain ageing to the latter. The disentangled SPARE-BA was consistently less correlated with Alzheimer’s disease-related clinical, molecular and genetic variables. By employing conservative molecular diagnoses and introducing Alzheimer’s disease continuum cases to the SPARE-BA model training, we achieved more dissociable neuroanatomical biomarkers of typical brain ageing and Alzheimer’s disease.

Hwang, Gyujoon↗
DOE OSTI2024

A high-throughput workflow to analyze sequence-conformation relationships and explore hydrophobic patterning in disordered peptoids

Understanding how a macromolecule’s primary sequence governs its conformational landscape is crucial for elucidating its function, yet these design principles are still emerging for macromolecules with intrinsic disorder. Herein, we introduce a high-throughput workflow that implements a practical colorimetric conformational assay, introduces a semi-automated sequencing protocol using matrix-assisted laser desorption/ionization and tandem mass spectrometry (MALDI-MS/MS), and develops a generalizable sequence-structure algorithm. Using a model system of 20mer peptidomimetics containing polar glycine and hydrophobic N-butylglycine residues, we identified nine classifications of conformational disorder and isolated 122 unique sequences across varied compositions and conformations. Conformational distributions of three compositionally identical library sequences were corroborated through atomistic simulations and ion mobility spectrometry coupled with liquid chromatography. A data-driven strategy was developed using existing sequence variables and data-derived “motifs” to inform a machine-learning algorithm toward conformation prediction. Here, this multifaceted approach enhances our understanding of sequence-conformation relationships and offers a powerful tool for accelerating the discovery of materials with conformational control.

data-driven analysis↗
NASA NTRSDate not supplied

Utilizing Earth Observations to Understand Landscape Patterns and Assist in Wildlife Management in Iona National Park, Angola

Following the end of the Angolan Civil War (1975-2002), human habitation in Iona National Park has grown exponentially, as has the livestock population. An ongoing drought beginning in 2017 has brought people, livestock, and wildlife into increasing competition for resources within the park. This study used Earth observation data, primarily Landsat and Sentinel imagery, to examine landscape trends to improve wildlife preservation approaches in Iona National Park, Angola. In collaboration with the NGO African Parks, we developed a robust land use and land cover (LULC) classification model using remote sensing data to augment sparse ground-based data in this arid land region. We used Google Earth Engine and a random forest classifier to map vegetation types, water bodies, and potential wildlife habitats. This analysis resulted in a high spatial resolution LULC time-series between 1984-2023, highlighting critical periods of socioecological change over the past 40 years. These results increased the partner’s ability to make scientifically grounded decisions about resource allocation and conservation priorities. This analysis supports the feasibility of applying remote sensing techniques coupled with machine learning models in dry regions, where standard survey methods are frequently limited by accessibility and resource availability. However, we identified limitations in ground-truth data and the difficulty of recognizing certain vegetation types in arid areas. Despite these limitations, the study demonstrated Earth observations' ability to transform wildlife management techniques in distant and data-scarce locations, providing a reproducible foundation for similar ecosystems around the world.

Emmanuel Aklie↗
DOE OSTI2025

SigTime: Learning and Visually Explaining Time Series Signatures

Understanding and distinguishing temporal patterns in time series data is essential for scientific discovery and decision-making. For example, in biomedical research, uncovering meaningful patterns in physiological signals can improve diagnosis, risk assessment, and patient outcomes. However, existing methods for time series pattern discovery face major challenges, including high computational complexity, limited interpretability, and difficulty in capturing meaningful temporal structures. Here, to address these gaps, we introduce a novel learning framework that jointly trains two Transformer models using complementary time series representations: shapelet-based representations to capture localized temporal structures and traditional feature engineering to encode statistical properties. The learned shapelets serve as interpretable signatures that differentiate time series across classification labels. Additionally, we develop a visual analytics system—SigTime—with coordinated views to facilitate exploration of time series signatures from multiple perspectives, aiding in useful insights generation. We quantitatively evaluate our learning framework on eight publicly available datasets and one proprietary clinical dataset. Additionally, we demonstrate the effectiveness of our system through two usage scenarios along with the domain experts: one involving public ECG data and the other focused on preterm labor analysis.

97 MATHEMATICS AND COMPUTING↗
NASA NTRS1976

Skylab/EREP application to ecological, geological, and oceanographic investigations of Delaware Bay

The author has identified the following significant results. Skylab/EREP S190A and S190B film products were optically enhanced and visually interpreted to extract data suitable for mapping coastal land use; inventorying wetlands vegetation; monitoring tidal conditions; observing suspended sediment patterns; charting surface currents; locating coastal fronts and water mass boundaries; monitoring industrial and municipal waste dumps in the ocean; and determining the size and flow direction of river, bay, and man-made discharge plumes. Film products were visually analyzed to identify and map ten land use and vegetation categories at a scale of 1:125,000. Thematic maps were compared with CARETS land use maps, resulting in classification accuracies of 50 to 98%. Digital tapes from S192 were used to prepare thematic land use maps. The resolutions of the S190A, S190B, and S192 systems were 20-40m, 10-20m, and 70-100m, respectively.

Klemas, V.↗
NASA NTRS1995

Pilot-Induced Oscillations and Human Dynamic Behavior

This is an in-depth survey and study of pilot-induced oscillations (PIO's) as interactions between human pilot and vehicle dynamics; it includes a broad and comprehensive theory of PIO's. A historical perspective provides examples of the diversity of PIO's in terms of control axes and oscillation frequencies. The constituents involved in PIO phenomena, including effective aircraft dynamics, human pilot dynamic behavior patterns, and triggering precursor events, are examined in detail as the structural elements interacting to produce severe pilot-induced oscillations. The great diversity of human pilot response patterns, excessive lags and/or inappropriate gain in effective aircraft dynamics, and transitions in either the human or effective aircraft dynamics are among the key sources implicated as factors in severe PIO's. The great variety of interactions which may result in severe PIO's is illustrated by examples drawn from famous PIO's. These are generalized under a pilot-behavior-theory-based set of categories proposed as a classification scheme pertinent to a theory of PIO's. Finally, a series of interim prescriptions to avoid PIO is provided.

McRuer, Duane T.↗
NASA NTRS2005

A Rapid Approach to Modeling Species-Habitat Relationships

A growing number of species require conservation or management efforts. Success of these activities requires knowledge of the species' occurrence pattern. Species-habitat models developed from GIS data sources are commonly used to predict species occurrence but commonly used data sources are often developed for purposes other than predicting species occurrence and are of inappropriate scale and the techniques used to extract predictor variables are often time consuming and cannot be repeated easily and thus cannot efficiently reflect changing conditions. We used digital orthophotographs and a grid cell classification scheme to develop an efficient technique to extract predictor variables. We combined our classification scheme with a priori hypothesis development using expert knowledge and a previously published habitat suitability index and used an objective model selection procedure to choose candidate models. We were able to classify a large area (57,000 ha) in a fraction of the time that would be required to map vegetation and were able to test models at varying scales using a windowing process. Interpretation of the selected models confirmed existing knowledge of factors important to Florida scrub-jay habitat occupancy. The potential uses and advantages of using a grid cell classification scheme in conjunction with expert knowledge or an habitat suitability index (HSI) and an objective model selection procedure are discussed.

Carter, Geoffrey M.↗
DOE OSTI2024

Composition and metabolism of microbial communities in soil pores

Delineation of microbial habitats within the soil matrix and characterization of their environments and metabolic processes are crucial to understand soil functioning, yet their experimental identification remains persistently limited. We combined single- and triple-energy X-ray computed microtomography with pore specific allocation of 13 C labeled glucose and subsequent stable isotope probing to demonstrate how long-term disparities in vegetation history modify spatial distribution patterns of soil pore and particulate organic matter drivers of microbial habitats, and to probe bacterial communities populating such habitats. Here we show striking differences between large (30-150 µm Ø) and small (4-10 µm Ø) soil pores in (i) microbial diversity, composition, and life-strategies, (ii) responses to added substrate, (iii) metabolic pathways, and (iv) the processing and fate of labile C. We propose a microbial habitat classification concept based on biogeochemical mechanisms and localization of soil processes and also suggests interventions to mitigate the environmental consequences of agricultural management.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

The K2 Galactic Archaeology Program Data Release 3: Age-abundance Patterns in C1–C8 and C10–C18

We present the third and final data release of the K2 Galactic Archaeology Program (K2 GAP) for Campaigns C1–C8 and C10–C18. We provide asteroseismic radius and mass coefficients, κ R and κ M , for ~19,000 red giant stars, which translate directly to radius and mass given a temperature. As such, K2 GAP DR3 represents the largest asteroseismic sample in the literature to date. K2 GAP DR3 stellar parameters are calibrated to be on an absolute parallactic scale based on Gaia DR2, with red giant branch and red clump evolutionary state classifications provided via a machine-learning approach. Combining these stellar parameters with GALAH DR3 spectroscopy, we determine asteroseismic ages with precisions of ~20%–30% and compare age-abundance relations to Galactic chemical evolution models among both low- and high-α populations for α, light, iron-peak, and neutron-capture elements. We confirm recent indications in the literature of both increased Ba production at late Galactic times as well as significant contributions to r-process enrichment from prompt sources associated with, e.g., core-collapse supernovae. With an eye toward other Galactic archeology applications, we characterize K2 GAP DR3 uncertainties and completeness using injection tests, suggesting that K2 GAP DR3 is largely unbiased in mass/age, with uncertainties of 2.9% (stat.) ± 0.1% (syst.) and 6.7% (stat.) ± 0.3% (syst.) in κ R and κ M for red giant branch stars and 4.7% (stat.) ± 0.3% (syst.) and 11% (stat.) ± 0.9% (syst.) for red clump stars. We also identify percent-level asteroseismic systematics, which are likely related to the time baseline of the underlying data, and which therefore should be considered in TESS asteroseismic analysis.

79 ASTRONOMY AND ASTROPHYSICS↗
NASA NTRS1981

Load compensating reactions to perturbations at wrist joint in normal man

The electromyographic responses to step torque loads were studied in flexors and extensors at the human wrist. Based on temporal bursting patterns and functional behavior, the response was divided into four temporal components. Two early components, the myotatic (30-60 ms) late myotatic (60-120 ms) appears to be reflex response. The third postmyotatic component (120-200 ms) appear to be a triggered reaction, preceeding the fourth, stabilizing component (200-400 ms). A comparison of response at the wrist with similar data at the ankle provides the basis for a generalized classification of the response in various muscles to torque step perturbations.

Jaeger, R. J.↗
NASA NTRS2024

Platte River Water Resources: Assessing Urban Flood Vulnerability to Select Restoration Sites for Urban Woods and Prairies in the Great Plains

In the Platte River Basin, wetlands provide ecosystem services such as flood mitigation and wildlife habitat. However, increasing urban development in the area has impacted natural floodplain processes, leading to a decline in wildlife habitat and an elevated flood risk for nearby communities. To address this issue, Audubon Great Plains’ Urban Woods and Prairies (UWP) Initiative focuses on restoring vital habitats within urban areas to protect bird species and reduce flood hazards. Our project used remotely sensed data, including Landsat 8 Operational Land Imagery (OLI), Sentinel-2 Multispectral Instrument (MSI), and Sentinel-1 Synthetic Aperture Radar (SAR), to assess land use and land cover from 2013 to 2023, as well as flood extent. Broad-scale analysis of the LULC showed some changes in land use patterns across the Central Platte River Basin, with the most notable being a decrease in Agricultural land coverage and an increase in Vegetation and Grassland coverage. Land use changes varied across 13 focal cities across the entire basin. In particular, developed land in Grand Island, NE, nearly tripled from 2019 to 2023, making it a good possible candidate for restoration efforts. We overlaid a flood extent map with the LULC classifications in Grand Island to identify possible restoration sites under UWP. This data will inform Audubon Great Plains in identifying potential restoration sites in key cities.

Jennifer Mathis↗
DOE OSTI2025

Predicting Large‐Scale Systematic Missing Pipe Attributes in Water Distribution Networks

Water distribution network (WDN) models are an essential tool used by water utilities for hydraulic analysis. Unfortunately, missing data and insufficient resources often make creating and maintaining these models unfeasible. Existing methods to address missing pipe properties, like sequential imputation for missing values and reconstruction using graph metrics, are designed to accommodate random patterns of missing information and require a significant percentage of the system's attributes to be known. However, these data completeness assumptions do not always align with real‐world scenarios where large sections of the WDN model have missing data. To address this challenge, this study proposes a data‐driven approach for estimating pipe diameter when considering different spatial patterns and degrees of data completeness (i.e., 0%–90%). Using data from 16 WDNs in Kentucky, this study compares the use of machine learning (ML) using topological and geospatial features against an existing deterministic approach. Results demonstrate that WDN models with pipe diameters predicted by the proposed ML method had comparable hydraulic performance to the ground truth models. Moreover, results showed that ML method performance varies between WDNs of differing topological classification. Insights from this study help advance the ability to leverage partial data to create and maintain WDN models amid uncertainty and inadequate resources.

Poff, Jason W. [Oregon State Univ., Corvallis, OR ↗
NASA NTRS1983

Identification of corn fields using multidate radar data

Airborne C- and L-band radar data acquired over a test site in western kansas were analyzed to determine corn-field identification accuracies obtainable using single-channel, multichannel, and multidate radar data. An automated pattern-recognition procedure was used to classify 144 fields into three categories: corn, pasture land, and bare soil (including wheat stubble and fallow). Corn fields were identified with accuracies ranging from 85 percent for single channel, single-date data to 100 percent for single-channel, multidate data. The effects of radar parameters such as frequency, polarization, and look angle as well as the effects of soil moisture on the classification accuracy are also presented.

Shanmugan, K. S.↗
NASA NTRS1972

Identification of phenological stages and vegetative types for land use classification

The author has identified the following significant results. Two procedures for examining ERTS-1 imagery were investigated in cooperation with the photographic services section. Positive, 10X enlargements were produced of spectral bands 4, 6, and 7, for a portion of photo 1033-21020. Adequate detail remained to recognize physical features such as streams, glaciers, ice, and snow. Also the entire image was studied using transparencies produced by the 3M color-key process. A combination of three complementary color combinations produced visually recognizable shades apparently indicating vegetation differences. Also lakes and glacial streams of sufficient size, ice and snow, and drainage patterns can be recognized. A need is indicated for oblique low level color aerial photography in the vicinity of identifiable terrain features to assist in the positive location of vegetative communities appearing in the analysis process. In the primary areas of concern to this project identifiable manmade features are conspicuous by their absence. In image 1049-20505 band 7 produced distinct tonal differences on a mountain slope to river bottom gradient.

Branton, C. I.↗
NASA NTRS1981

CROP type analysis using Landsat digital data

Classification and statistical sampling techniques for crop type discrimination using Landsat digital data have been developed by the University of California in cooperation with NASA and the California Department of Water Resources. Ratioed bands (MSS 7/5 and 5/4) and a sun-angle corrected Euclidean albedo band were prepared from data for the Sacramento Valley for five different dates. The test area was stratified into general crop groupings based on the particular patterns of irrigation timing for each crop. Data classified within each stratum were used to produce a crop type map. Comparison with ground data indicates that certain crops and crop groups are discernable. Small grains and rice are easily identifiable, as are deciduous fruit varieties as a group. However, it is not feasible to separate various fruit and nut varieties, or separate vegetable crops with these techniques at present.

Brown, C. E.↗
NASA NTRS1992

Physical properties of Deucalionis, Eos, Xanthe-type units in the central equatorial region of Mars

Classification and mapping of surficial units in the central equatorial region of Mars (30 degrees N to 20 degrees S, 57 degrees E to 75 degrees W) using enhanced color images and Mars Consortium data, identified three distinct, high albedo, relatively red surficial units in regions with intermediate to high thermal inertias. These units have distinctive properties and morphologies, occur in different, well-defined areas, and show different seasonal and secular patterns of albedo change. Deucalionis units occupy the classical albedo area of Deucalionis Regio, south of Meridiani Sinus and Sabaeus Sinus, and adjacent areas. Eos forms a bright band that separates the dark, relatively blue Meridiani-type units that dominate the southern part of the study area from intermediate albedo, relatively red Oxia units common in the north. Xanthe forms moderately bright, relatively red, Type 1B crater-streaks and uniform sheet-deposits in and adjacent to parts of Chryse Planitia, including the Viking 1 landing site. Xanthe is always associated with Oxia deposits, and has significantly lower albedos than the Eos materials, which it can be confused with.

Strickland, Edwin L., III↗
NASA NTRS1996

The Application of Remote Sensing Data to GIS Studies of Land Use, Land Cover, and Vegetation Mapping in the State of Hawaii

A land cover-vegetation map with a base classification system for remote sensing use in a tropical island environment was produced of the island of Hawaii for the State of Hawaii to evaluate whether or not useful land cover information can be derived from Landsat TM data. In addition, an island-wide change detection mosaic combining a previously created 1977 MSS land classification with the TM-based classification was produced. In order to reach the goal of transferring remote sensing technology to State of Hawaii personnel, a pilot project was conducted while training State of Hawaii personnel in remote sensing technology and classification systems. Spectral characteristics of young island land cover types were compared to determine if there are differences in vegetation types on lava, vegetation types on soils, and barren lava from soils, and if they can be detected remotely, based on differences in pigments detecting plant physiognomic type, health, stress at senescence, heat, moisture level, and biomass. Geographic information systems (GIS) and global positioning systems (GPS) were used to assist in image rectification and classification. GIS was also used to produce large-format color output maps. An interactive GIS program was written to provide on-line access to scanned photos taken at field sites. The pilot project found Landsat TM to be a credible source of land cover information for geologically young islands, and TM data bands are effective in detecting spectral characteristics of different land cover types through remote sensing. Large agriculture field patterns were resolved and mapped successfully from wildland vegetation, but small agriculture field patterns were not. Additional processing was required to work with the four TM scenes from two separate orbits which span three years, including El Nino and drought dates. Results of the project emphasized the need for further land cover and land use processing and research. Change in vegetation composition was noted in the change detection image.

Hogan, Christine A.↗
NASA NTRS2021

Identifying Meteorological Influences on Marine Low Cloud Mesoscale Morphology Using Satellite Classifications

Marine low cloud mesoscale morphology in the southeastern Pacific Ocean is analyzed using a large dataset of machine-learning generated classifications spanning three years. Meteorological variables and cloud properties are composited 10by mesoscale cloud type, showing distinct meteorological regimes of marine low cloud organization from the tropics to the midlatitudes. The presentation of mesoscale cellular convection, with respect to geographic distribution, boundary layer structure, and large-scale environmental conditions, agrees with prior knowledge. Two tropical and subtropical cumuliform boundary layer regimes, suppressed cumulus and clustered cumulus, are studied in detail. The patterns in precipitation, circulation, column water vapor, and cloudiness are consistent with the representation of marine shallow mesoscale convective 15 self-aggregation by large eddy simulations of the boundary layer. Although they occur under similar large-scale conditions, the suppressed and clustered low cloud types are found to be well-separated by variables associated with low-level mesoscale circulation, with surface wind divergence being the clearest discriminator between them, whether reanalysis or satellite observations are used. Clustered regimes are associated with surface convergence and suppressed regimes are associated with surface divergence.

Johannes Mohrmann↗