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At least 541 records · Page 30

Computer simulations unlock the secrets of antibiotic resistance

In a strategy to combat antibiotic resistant bacteria, theoretical biologists at Los Alamos National Laboratory are simulating how some microbes use protein structures to flush out the drugs before they kill the bacteria. At an atom level, the simulations show the efflux pumps in action, giving researchers a new tool for figuring out how to disable the pumps. That would allow some currently powerless antibiotics to once again cure a range of public health threats, including bronchitis, pink eye, ear infections, and sexually transmitted diseases.

59 BASIC BIOLOGICAL SCIENCES↗

GDCI cold start misfire prevention

A GDCI engine control system determines if in-cylinder conditions are sufficient to achieve combustion in a given cylinder or if a misfire is likely. Fuel is delivered to that cylinder if combustion is probable, but fuel is disabled to that cylinder if a misfire is probable.

Roth, Gregory T.↗

Increasing Software Testing Coverage and Portability with Spack

Adequate testing coverage is critical for successful scientific software development. For numerically intensive codes, the test matrix should cover a variety of machines, compilers, third-party library dependencies, as well as possible other features such as memory testing, parallelization paradigms, and application options that may be enabled or disabled, as some examples. Such coverage can be a major burden on developers without powerful methods for managing the matrix. Spack is a great tool developed by Lawrence Livermore National Lab for managing software on a Unix-based system and in addition to this, we are leveraging Spack to simplify application testing development and management. Here we demonstrate exploiting many of Spack's features to orchestrate the test coverage for the Nalu-Wind application we are developing under the Exascale Computing Project. By using Spack underneath our testing infrastructure, we have increased our testing coverage, portability, robustness, and software quality. While we use our Nalu-Wind application as an example, the benefits of exploiting Spack for application testing can be had for other applications as well.

97 MATHEMATICS AND COMPUTING↗

Exploring Integer Sum Reduction using Atomics on Intel CPU

Atomic functions are useful in updating a shared variable by multiple threads, barrier synchronizations, constructing complex data structures, and building high-level frameworks. In this paper, we focus on the evaluation and analysis of integer sum reduction, a common data parallel primitive. We convert the sequential reduction into parallel OpenCL implementations on the CPU. We also develop three micro kernels, which allow us to understand the relationships between the kernel performance and the operations involved in reduction. The results of the micro kernels show that increasing the work-group size linearly can linearly improve the kernel performance. There is a sweet spot in the relationship between the work-group size and barrier synchronization overhead. The performance of the atomics over local memory are not sensitive to the work-group size. The sum reduction kernel with vectorized memory accesses can improve the performance of the baseline kernel for a wide range of work-group sizes. However, the vectorization efficiency shrinks with the growing work-group size. We also find that the vendor’s default OpenCL kernel optimization does not improve the kernel performance. On average, disabling the optimization can reduce the execution time of the kernel with vectorized memory accesses by 15%. We attribute the performance drop to the fact that the default kernel optimizations instantiate a large number of atomics over global memory when implicitly vectorizing the kernel computation.

atomics↗

Resource management based on physical authentication and authorization

Systems and methods are disclosed that provide for management of resources of one or more systems included in an access-controlled area of a distributed site of an electric power delivery system. In certain embodiments, one or more users entering and access-controlled area may be identified via physical access control credentials provided to an associated access control system. A determination may be made as to whether the users have access rights to one or more hardware and/or software resources of systems included in the access-controlled area. Based on the determination, control signals may be generated by the access control system to enable and/or disable associated resources.

Gammel, Dennis↗

Bit error protection in cache memories

A computing device having a cache memory (or “cache”) is described, as is a method for operating the cache. The method for operating the cache includes maintaining, in a history record, a representation of a number of bit errors detected in a portion of the cache. When the history record indicates that no bit errors or a single-bit bit error was detected in the portion of the cache memory, the method includes selecting, based on the history record, an error protection to be used for the portion of the cache memory. When the history record indicates that a multi-bit bit error was detected in the portion of the cache memory, the method includes disabling the portion of the cache memory.

97 MATHEMATICS AND COMPUTING↗

Transportation Database Development Using Floating Car Data

In support of projects funded by the U.S. Department of Transportation and the U.S. Department of Energy, the National Renewable Energy Laboratory (NREL) has received on average 4 million floating car data (FCD) points each day over a 3-year period. To handle data sets of this size, the Transportation & Hydrogen Systems Center at NREL has developed a series of transportation databases (Transportation Secure Data Center and Fleet DNA projects) to support real-world vehicle and transportation infrastructure analysis on a national scale. To ensure the quality of the FCD received by NREL and to ensure that data can be accessed and applied quickly and easily across transportation research disciplines, a customized data processing routine and database were required. 'Floating car data' is a general term for location data recorded by a vehicle or by a person traveling in a vehicle. FCD are used to support real-time traffic information systems and have proven to be beneficial in a large number of research applications. For large-scale traffic information systems, FCD are logged from smart phones using either the GPS included in the device, or if GPS is disabled, triangulation from the network. Additionally, in scientific applications FCD are oftentimes collected on a smaller scale using onboard GPS-enabled data logging systems. Through the fusion of real-time data and historically logged results, up-to-date and accurate vehicle operating information are provided in near real-time to support routing and operation decisions. The approach outlined within this paper builds upon methods developed for advanced traffic information systems to link FCD to the street of travel and further extends the link to data recorded by components within a vehicle. Linking vehicle component performance to the infrastructure a vehicle is operating within provides the path to assess vehicle and infrastructure interactions, going far beyond providing information on traffic flow alone.

33 ADVANCED PROPULSION SYSTEMS↗

Hardware intrusion detection system

An apparatus for intrusion detection includes processing circuitry, a switch, signal detection circuitry, and an analog-to-digital converter (“ADC”). The processing circuitry is coupled to send a challenge signal to a device when the device is coupled to the processing circuitry. The switch is coupled to be enabled and disabled by the processing circuitry. The switch is for coupling to the device to receive a response signal in response to the challenge signal sent by the processing circuitry. The signal detection circuitry is coupled to receive the response signal in via the switch, when the processing circuitry enables the switch. The ADC is coupled to take measurements of the signal detection circuitry at a first output. The processing circuitry is coupled to the ADC and configured to analyze whether an intruder is present in the device based on the measurements of the signal detection circuitry.

42 ENGINEERING↗

Economics of Indoor Air Quality

Buildings represent a major end use of energy throughout the world and are typically the dominant sector for electricity. The use of that energy is to provide buildings services, the most important of which is Indoor Environmental Quality (IEQ). Heating and air conditioning systems typically handle the thermal comfort aspects of IEQ; the energy impacts and economics of such systems is well studied. The most important remaining aspect of IEQ is Indoor Air Quality (IAQ). IAQ combines health aspects odour and moisture but is typically not represented by a health-based performance metric. As a result, ventilation rates are used as a surrogate for IAQ. Recent research has developed “Smart Ventilation” technologies that economically optimize ventilation by considering utility rate structures, exposure to outdoor contaminants, as well as peak loads and total energy demand. Enabling this optimization of Smart Ventilation requires IAQ performance metrics that can be monetized. Lawrence Berkeley National Laboratory and others have used Disability Adjusted Life Years (DALYs) to quantify health impacts of contaminant exposure, which shows IAQ may be a critical economic driver. This paper reviews these general concepts and presents some of the most recent work we have done on both Smart Ventilation and economic metrics for IAQ.

Walker, Iain↗

Scientists create first billion-atom biomolecular simulation

Researchers have created the largest simulation to date of an entire gene of DNA, a feat that required one billion atoms to model and will help researchers to better understand and develop cures for diseases like cancer. It will also give insight into autism and intellectual disabilities. Modeling genes at the atomistic level is the first step toward creating a complete explanation of how DNA expands and contracts, which controls genetic on/off switching.

59 BASIC BIOLOGICAL SCIENCES↗

ComStock/COVID-19: U.S. Commercial Building Stock Analysis of COVID-19 Mitigation Strategies

ComStock is a DOE platform, with NREL as the lead developer, that models the U.S. commercial building stock using OpenStudio/EnergyPlus to perform physics-based building energy modeling simulations. The ASHRAE Epidemic Taskforce (ASHRAE-ETF) has released several COVID-19 mitigation strategies for commercial buildings. ComStock was used to analyze the impact of four strategies on the existing commercial building stock. These strategies are upgrading to MERV-13 filters, disabling demand control ventilation (DCV), increasing minimum outdoor air to 100%, and HVAC flushing mode operation. Results show the impact of each measure on energy consumption, electric consumption, gas consumption and peak electric.

30 DIRECT ENERGY CONVERSION↗

Attacking the IEC-61131 Logic Engine in Programmable Logic Controllers in Industrial Control Systems

In industrial control systems (ICS), programmable logic controllers (PLCs) directly monitor and control a physical process such as nuclear power plants, gas pipelines, and water treatment. They are equipped with a control logic written in IEC-61131 languages (e.g., ladder logic and structured text) that defines how a PLC should control a physical process. A PLC's control logic is a usual target of a cyberattack to sabotage a physical process. For instance, Stuxnet targets a control logic of a Siemens S7-300 PLC to damage a nuclear facility's centrifuges. The existing attacks in the literature generally focus only on injecting malicious control logic into a PLC. This paper presents a new dimension of control logic attacks that target the control logic engine (responsible for running a control logic) of a PLC. It demonstrates that a cyberattack can disable the control logic engine successfully by exploiting inherent PLC features such as program mode and starting/stopping engine. We develop two novel case studies on control logic engine attacks by employing the MITRE ATT\&CK knowledge base on the real-world PLCs used in industry settings, i.e., 1) Schweitzer Engineering Laboratory (SEL)'s Real-Time Automation Controller (SEL-3505 RTAC) equipped with security features such as encrypted traffic and device-level access control, and 2) traditional PLCs, i.e., Schneider Electric's Modicon M221, Allen-Bradley's MicroLogix 1400 and 1100 that do not have security features. The case studies present the internals of the logic engine attacks and facilitate the ICS research community and industry to understand the attack vectors on the control logic engine. We evaluate the effectiveness of the control engine attacks on a power substation, a 4-floor elevator, and a conveyor belt to demonstrate their real-world impact of halting a physical process.

Ali qasim, Syed↗

Coupled Microbial-Conversion and Computational-Fluid-Dynamics (CFD) Models for Butanediol Production in Micro-Aerated Reactors

Microbial conversion of substrates to macromolecules has been widely used in the synthesis of value-added products in pharmaceutical and biotechnology industries. These bioreactions are also being investigated in the production of low-value commodities such as biofuels [1]. Gas-liquid mass-transfer and transport-reaction coupling are important challenges when designing and scaling up these reactor systems. Experiments in wellmixed small-scale reactors have enabled characterization of microbial reactivity, while their coupling with macroscale transport remains relatively unexplored. In this work, we use a coupled metabolic-CFD model to study the action of a genetically engineered microbe Zymomonas mobilis [2] on sugars to produce 2,3-Butanediol (BDO). BDO is an important hydrocarbon intermediate that can be catalytically upgraded to several fuels and chemicals [3]. An important aspect to this particular microbial conversion is the need for micro-aerated environments as opposed to traditional aerobic fermentation. Slight variations in oxygen concentration can result in competing reaction pathways that disable BDO production. Hence, gas-liquid mass transfer and transport need to be optimized in large-scale reactors to maximize BDO production, for which CFD is a valuable tool. The aerobic-fermentation CFD model previously developed by the authors [5] for simulating bubble-column and airlift reactors at scale was used in this study. The Reynolds-averaged mass, momentum and energy transport equations for interpenetrating gas and liquid phase are solved in this model along with the transport and interphase mass transfer of oxygen. Our previous work used a phenomenological model for microbial oxygen uptake that neglected microbial growth and other reaction pathways. In this work, a detailed metabolic model enabled prediction of product formation and inhibition pathways. In order to manage computational cost, we used a subcycling technique [6] that takes advantage of the clear separation in transport (~ 200 sec) and reaction (~ 2-3 hours) timescales. The CFD model is first solved to steady state, after which the metabolic model is advanced at every cell in the computational domain using the local oxygen concentration. The CFD model is then run to achieve a new steady state that provides a new oxygen distribution for the metabolic model. This process, where reaction and fluid updates are interleaved together, is iterated until reactants are completely exhausted. This work will examine the performance of different reactor designs such as bubble column and airlift reactors at scale (250-500 m3). Oxygen mass-transfer coefficient and distribution are critically analyzed among reactors, and optimization studies pertaining to aeration is presented. Furthermore, it has been observed in experiments that high BDO production may be achieved by manipulating the aerobic environment over the course of reaction, such that oxygen concentration is high during the growth phase, and very low as sugar is depleted. This characteristic will be addressed by our simulations for which a timedependent scheduling strategy for aeration is presented that maximizes BDO production. [1] Humbird, D., Davis, R., and McMillan, J., Aeration costs in stirred-tank and bubble column bioreactors, Biochemical Engineering Journal, 127, 161—166, 2017 [2] Yang, S., Mohagheghi, A., Franden, M. A., Chou, Y.-C., Chen, X., Dowe, N., Himmel, M. E., and Zhang, M., Metabolic engineering of zymomonas mobilis for 2, 3-butanediol production from lignocellulosic biomass sugars. Biotechnology for biofuels, 9(1):189, 2016 [3] Kim, S. J., Sim, H. J., Kim, J. W., Lee, Y. G., Park, Y. C., and Seo, J. H., Enhanced production of 2,3-butanediol from xylose by combinatorial engineering of xylose metabolic pathway and cofactor regeneration in pyruvate decarboxylase-deficient Saccharomyces cerevisiae. Bioresource Technology, 245:1551–1557, 2017 [4] Weller, H., Tabor, G., Jasak, H. and Fureby, C., A tensorial approach to computational continuum mechanics using object-oriented techniques, Computers in physics, 12, 6, 620--631, 1998

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Hardware intrusion detection system

An apparatus for intrusion detection includes processing circuitry, a switch, signal detection circuitry, and an analog-to-digital converter (“ADC”). The processing circuitry is coupled to send a challenge signal to a device when the device is coupled to the processing circuitry. The switch is coupled to be enabled and disabled by the processing circuitry. The switch is for coupling to the device to receive a response signal in response to the challenge signal sent by the processing circuitry. The signal detection circuitry is coupled to receive the response signal in via the switch, when the processing circuitry enables the switch. The ADC is coupled to take measurements of the signal detection circuitry at a first output. The processing circuitry is coupled to the ADC and configured to analyze whether an intruder is present in the device based on the measurements of the signal detection circuitry.

Edwards, Nathan J.↗

Hydrogen Transport from Dielectrics to poly-Si/SiOx Passivating Contacts Measured by Mass Spectrometry and Vibrational Spectroscopy

We demonstrate the relationship between Si solar cell passivation and hydrogen content of various passivating films, including hydrogenated amorphous silicon (a-Si:H), aluminum oxide (Al2O3), silicon nitride (SiNx) and combinations thereof. Through isotopic studies using quadrupole mass spectrometry (QMS), Fourier transform infrared spectroscopy (FTIR), and Raman spectroscopy, we determine how hydrogen content and stability within each type of film relates to final passivation quality of solar cell test structures. Si solar cells using polycrystalline silicon on silicon oxide (poly-Si/SiOx) passivating contacts are at the forefront of Si solar cell research and emerging as top performers within industrial production. Performance of passivating contact Si solar cells is largely determined by a parameter known as the open-circuit voltage Voc, which directly relates to material quality within the bulk of the device and at surfaces. High Voc is achieved when defects within the bulk crystalline silicon (c-Si) and at interfaces are passivated, preventing them from acting as charge carrier recombination centers. One of the most important means of passivating defects within Si solar cells is via hydrogenation, injecting the cells with large amounts of H to satisfy dangling bonds in the bulk and at interfaces. Hydrogen is especially important in deactivating a prevalent defect in industrial p-type devices which leads to decreased device performance over long-term exposure to light, called light-induced degradation (LID). Some of the most common materials used to supply H to devices are a-Si:H, Al2O3, and SiNx, which can contain very large amounts of H. Upon annealing at elevated temperatures, the hydrogen becomes mobile enough to find and disable defect sites. However, too much hydrogen can also be problematic, sometimes leading to an effect called light and elevated temperature induced degradation (LeTID). It has been shown that these films passivate the interfaces of poly-Si passivating contacts differently, leading to differing performance. Though Al2O3 is a well-defined dielectric material, SiNx can have many different values of x depending on precursor gases and deposition conditions. We observe different FTIR and Raman spectra from different SiNx over a range of x values films to determine the bonding environments within them and further correlate the relative concentrations of Si, N, and H to the stability of H within SiNx and the passivation performance of each film. Because deuterium is chemically identical to hydrogen within these systems, but gives different signals in FTIR and Raman spectroscopy as well as in QMS, isotopic substitution can be used as an excellent tool to probe the H within films. In addition to measuring the H and D bonding within films using FTIR and Raman spectroscopy, we will use such isotopic experiments to observe H and D movement out of these hydrogenating films at elevated temperatures using QMS to determine the stability of H bonding within such systems. With these films characterized based on elemental composition, we will relate such measurements to passivation quality of these films and combinations thereof on poly-Si/SiOx contact structures using quasi-steady state photoconductance decay measurements to obtain implied open-circuit voltage (iVoc) and saturation current density J0 values. Such investigations into the performance of different passivating films and film stacks will lead to greater understanding of dielectrics in semiconductor devices, further improvements in passivated contact design, and eventually, greater proliferation of renewable solar energy worldwide.

Al2O3↗

Passenger Boarding Station and Curbfront Configuration Concepts for On-Demand Services with Small Automated Vehicles: Preprint

This paper explores the various configurations of off-line stations and vehicle berthing that have been found to be fundamentally important parameters in the analysis of system performance, operations, and capacity. The proposed Automated Transit Network system concept, which provides a direct ride between a passenger's origin and destination station, is applicable to both fixed guideway automated transit and to systems with self-driving vehicles. Addressed at a conceptual level are the vehicle/station interface in terms of Americans with Disability Act compliance and station capacity concerns. The concept of open-edge platforms monitored by advanced sensing technology combined with artificial intelligence-powered perception for the purpose of protecting passengers from entering the active vehicle lanes is also discussed. Finally, the paper draws initial conclusions on how these station configurations, operational complexities, and associated costs can be better understood through appropriate research and development.

ADVANCED PROPULSION SYSTEMS↗

Automated Mobility Platforms: A Framework for Versatile, Energy-Efficient Urban Transportation for the 21st Century: Preprint

This paper presents automated mobility platforms (AMPs) as a framework to deliver high-quality urban mobility. AMPs leverage advances in sensing technology developed from automated roadway vehicles to provide opportunities for efficient movement of people and goods in dense urban environments, campuses, and large facilities like airports. In this paper, we layout the concept of AMPs and how they can serve the mobility needs of the population by providing service at the intersection of micromobility (services such as electric scooters or bikes), personal rapid transit, and moving walkways. Several key attributes and justification for the AMPs concept are described, including improvements to accessibility (inherent in design) covering both socioeconomic and disability equity, safety, energy efficiency, cost-effectiveness, urban land and space management, and scalability. We summarize the results from an ongoing national laboratory-sponsored, faculty-supported, student-led investigation into AMPs that includes stakeholder engagement and technical feasibility assessment.

ADVANCED PROPULSION SYSTEMS↗

Hybrid Heat Pump Controls: Conventional Dual Fuel versus Seamlessly Fuel Flexible Heat Pump

This paper compares the performance of a novel seamlessly fuel flexible heat pump (SFFHP) and conventional dual fuel heat pump (DFHP) for space heating. The conventional dual fuel systems either run on the gas furnace or electric heat pump at any given moment, as a comparison, the proposed seamlessly fuel flexible heat pump simultaneously consumes gas and electricity by continuously optimizing the proportion of each. The process air flows across the heat pump condenser first and then flows across the furnace coil, therefore, the heat pump temperature lift is reduced. SFFHP delivers energy savings by allowing each subsystem, i.e., gas furnace and electric heat pump, to operate where it performs best.For DFHP, two operation control strategies, i.e., non-restricted control and restricted control, are available on market. For the non-restricted mode, the thermostat has a switching temperature-programmed according to the balancing point of heating load and capacity curve. Heat pump operates above the switching temperature, while the furnace takes over under the switching temperature. For the restricted control, the compressor of a heat pump is disabled below a predefined lockout outdoor temperature to let the furnace take over. For SFFHP, a model predictive control strategy is developed to continuously adjust the capacities of the electric heat pump and gas furnace based on the foreseen weather data, utility price signals, and marginal grid emission signals with the goal of minimizing the utility cost and CO2 emission while guaranteeing comfort requirements.In this paper, DFHP and SFFHP are simulated using high-fidelity heat pump performance curves generated from DOE/ORNL heat pump design model. Performance comparison of DFHP and SFFHP during 2019-2020 heating season in Los Angeles shows that SFFHP with model predictive control achieves 23% utility cost reduction and 17 % CO2 emission reduction. Case studies demonstrate that SFFHP can deliver significant reductions in peak demand, utility cost, and CO2 emission. As a result, SFFHP can deliver superior benefits for utility cost reduction and CO2 emission reduction over conventional dual fuel heat pump.

Li, Zhenning↗