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At least 541 records · Page 30

A high performance magnetoplasmadynamic thruster

A flared-anode MPD thruster has been modified to permit injection of propellant through the backplate near the anode wall. At 6 g/sec argon, this thruster displays an onset current of 41.4 kA, almost double the value observed for propellant injection at the cathode and intermediate radial positions. A magnetic field survey of the interelectrode region shows current density is highest at the upstream and downstream ends of the chamber. The operating efficiency at onset current inferred from magnetic field data exceeds 50 percent, but swinging-gate thrust stand measurements reveal a progressive divergence between inferred and actual thrust with increasing power. Near onset, the measured thrust is approximately 20 percent lower than that inferred from magnetic probing. Explanations for this behavior have been explored with viscous drag emerging as the most probable cause of performance degradation.

Wolff, M.↗

Climate and infectious disease: use of remote sensing for detection of Vibrio cholerae by indirect measurement

It has long been known that cholera outbreaks can be initiated when Vibrio cholerae, the bacterium that causes cholera, is present in drinking water in sufficient numbers to constitute an infective dose, if ingested by humans. Outbreaks associated with drinking or bathing in unpurified river or brackish water may directly or indirectly depend on such conditions as water temperature, nutrient concentration, and plankton production that may be favorable for growth and reproduction of the bacterium. Although these environmental parameters have routinely been measured by using water samples collected aboard research ships, the available data sets are sparse and infrequent. Furthermore, shipboard data acquisition is both expensive and time-consuming. Interpolation to regional scales can also be problematic. Although the bacterium, V. cholerae, cannot be sensed directly, remotely sensed data can be used to infer its presence. In the study reported here, satellite data were used to monitor the timing and spread of cholera. Public domain remote sensing data for the Bay of Bengal were compared directly with cholera case data collected in Bangladesh from 1992-1995. The remote sensing data included sea surface temperature and sea surface height. It was discovered that sea surface temperature shows an annual cycle similar to the cholera case data. Sea surface height may be an indicator of incursion of plankton-laden water inland, e.g., tidal rivers, because it was also found to be correlated with cholera outbreaks. The extensive studies accomplished during the past 25 years, confirming the hypothesis that V. cholerae is autochthonous to the aquatic environment and is a commensal of zooplankton, i.e., copepods, when combined with the findings of the satellite data analyses, provide strong evidence that cholera epidemics are climate-linked.

Cholera/epidemiology↗

Announcing the Biomedical Data Translator: Initial Public Release

ABSTRACT The growing availability of biomedical data offers vast potential to improve human health, but the complexity and lack of integration of these datasets often limit their utility. To address this, the Biomedical Data Translator Consortium has developed an open‐source knowledge graph–based system—Translator—designed to integrate, harmonize, and make inferences over diverse biomedical data sources. We announce here Translator's initial public release and provide an overview of its architecture, standards, user interface, and core features. Translator employs a scalable, federated, knowledge graph framework for the integration of clinical, genomic, pharmacological, and other biomedical knowledge sources, enabling query retrieval, inference, and hypothesis generation. Translator's user interface is designed to support the exploration of knowledge relationships and the generation of insights, without requiring deep technical expertise and gradually revealing more detailed evidence, provenance, and confidence information, as needed by a given user. To demonstrate Translator's application and impact, we highlight features of the user interface in the context of three real‐world use cases: suggesting potential therapeutics for patients with rare disease; explaining the mechanism of action of a pipeline drug; and screening and validating drug candidates in a model organism. We discuss strengths and limitations of reasoning within a largely federated system and the need for rich concept modeling and deep provenance tracking. Finally, we outline future directions for enhancing Translator's functionality and expanding its data sources. Translator represents a significant step forward in making complex biomedical knowledge more accessible and actionable, aiming to accelerate translational research and improve patient care.

Research & Experimental Medicine↗

An Ontology-Based Virtual Orrery

Tutorials in this technical memorandum explain how to use the Protégé ontology editor to import data from Excel and export data from Protégé in the JavaScript Object Notation Linked Data (JSON-LD) format then how to transform the JSON-LD file into variables for web apps. These tutorials apply JavaScript and R programming languages and 3D graphics libraries. Ontologies enable standardization, data sharing, and semantic interoperability. An ontology models a domain of knowledge as taxonomies of annotated classes, data properties, relational object properties, and inference rules. This technical memorandum includes a data dictionary for a subset of the Space Situational Awareness Ontology (SSAO).

Ontologies↗

Synthesis of regional crust and upper-mantle structure from seismic and gravity data

Available seismic and ground based gravity data are combined to infer the three dimensional crust and upper mantle structure in selected regions. This synthesis and interpretation proceeds from large-scale average models suitable for early comparison with high-altitude satellite potential field data to more detailed delineation of structural boundaries and other variations that may be significant in natural resource assessment. Seismic and ground based gravity data are the primary focal point, but other relevant information (e.g. magnetic field, heat flow, Landsat imagery, geodetic leveling, and natural resources maps) is used to constrain the structure inferred and to assist in defining structural domains and boundaries. The seismic data consists of regional refraction lines, limited reflection coverage, surface wave dispersion, teleseismic P and S wave delay times, anelastic absorption, and regional seismicity patterns. The gravity data base consists of available point gravity determinations for the areas considered.

Alexander, S. S.↗

Development and usage of a false color display technique for presenting Seasat-A scatterometer data

A computer generated false color program which creates digital multicolor graphics to display geophysical surface parameters measured by the Seasat-A satellite scatterometer (SASS) is described. The data is incrementally scaled over the range of acceptable values and each increment and its data points are assigned a color. The advantage of the false color display is that it visually infers cool or weak data versus hot or intense data by using the rainbow of colors. For example, with wind speeds, levels of yellow and red could be used to imply high winds while green and blue could imply calmer air. The SASS data is sorted into geographic regions and the final false color images are projected onto various world maps with superimposed land/water boundaries.

Jackson, C. B.↗

Arctic multiyear ice classification and summer ice cover using passive microwave satellite data

Passive microwave data collected by Nimbus 7 were used to classify and monitor the Arctic multilayer sea ice cover. Sea ice concentration maps during several summer minima are analyzed to obtain estimates of ice floes that survived summer, and the results are compared with multiyear-ice concentrations derived from these data by using an algorithm that assumes a certain emissivity for multiyear ice. The multiyear ice cover inferred from the winter data was found to be about 25 to 40 percent less than the summer ice-cover minimum, indicating that the multiyear ice cover in winter is inadequately represented by the passive microwave winter data and that a significant fraction of the Arctic multiyear ice floes exhibits a first-year ice signature.

Comiso, J. C.↗

The Number and Pattern of Viral Genomic Reassortments are not Necessarily Identifiable from Segment Trees

Reassortment is an evolutionary process common in viruses with segmented genomes. These viruses can swap whole genomic segments during cellular co-infection, giving rise to novel progeny formed from the mixture of parental segments. Since large-scale genome rearrangements have the potential to generate new phenotypes, reassortment is important to both evolutionary biology and public health research. However, statistical inference of the pattern of reassortment events from phylogenetic data is exceptionally difficult, potentially involving inference of general graphs in which individual segment trees are embedded. In this paper, we argue that, in general, the number and pattern of reassortment events are not identifiable from segment trees alone, even with theoretically ideal data. We call this fact the fundamental problem of reassortment, which we illustrate using the concept of the “first-infection tree,” a potentially counterfactual genealogy that would have been observed in the segment trees had no reassortment occurred. Further, we illustrate four additional problems that can arise logically in the inference of reassortment events and show, using simulated data, that these problems are not rare and can potentially distort our observation of reassortment even in small data sets. Finally, we discuss how existing methods can be augmented or adapted to account for not only the fundamental problem of reassortment, but also the four additional situations that can complicate the inference of reassortment.

59 BASIC BIOLOGICAL SCIENCES↗

Deployment of inference as a service at the US CMS Tier-2 data centers

Coprocessors, especially GPUs, will be a vital ingredient of data production workflows at the HL-LHC. At CMS, the GPU-as-a-service approach for production workflows is implemented by the SONIC project (Services for Optimized Network Inference on Coprocessors). SONIC provides a mechanism for outsourcing computationally demanding algorithms, such as neural network inference, to remote servers, where requests from multiple clients are intelligently distributed across multiple GPUs by a load-balancing service. This talk highlights the recent progress in deploying SONIC at selected U.S. CMS Tier-2 data centers. Using realistic CMS Run3 data processing workflows, such as those containing transformer-based algorithms, we demonstrate how SONIC is integrated into the production-like environment to enable accelerated inference offloading. We will present developments from both the client and server sides, including production job and data center configurations for NVIDIA and AMD GPUs. We will also present performance scaling benchmarks and discuss the challenges of operating SONIC in CMS production, such as server discovery, GPU saturation, fallback server logic, etc.

Holzman, Burt↗

Measuring higher-order moments of neutron-time-of-flight data for cryogenic inertial confinement fusion implosions on OMEGA

Ion temperatures serve as an important diagnostic for inertial confinement fusion (ICF) implosions. In direct-drive ICF experiments on OMEGA, neutron-time-of-flight (nTOF) data are used to infer the ion temperature of the fusing plasma produced in the implosion experiment. The analysis of the nTOF data requires an assumption about the shape of the underlying source signal. Since the source nTOF signal is a near-replica of the neutron energy spectrum, an ideal Gaussian shape, corresponding to the neutron energy spectrum of a uniform temperature plasma, is routinely employed. However, spatial and temporal variations of the ion temperature in the plasma give rise to higher-order moments, which were first described by Munro [Nucl. Fusion 56, 036001 (2016)]. In this work, we show a simpler alternative analysis to derive moments of the neutron energy spectrum for a plasma with variations in ion temperature. We also present a revised analysis of measured nTOF signals that uses a model with an additional degree of freedom to take into account the effect of ion temperature variations on the shape of the spectrum. Compared to presently used nTOF analysis, the revised analysis yields on average ≈2× more accurate fits to the data and up to 15% higher ion temperatures for cryogenic experiments. As a result, we quantify the ion temperature inflation caused by radially symmetric fluid flows, which are present even in a symmetric implosion, and which serve as a lower bound on the ion temperature inflation in real implosions.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Improvement of synoptic scale moisture and wind field analyses using the Nimbus 4 THIR 6.7 micron observations

The Nimbus 4 temperature-humidity infrared radiometer (THIR) monitors radiation in the 6.5 to 7.2 micron water vapor absorption with a 23 kilometer spatial resolution at the sub-satellite point. Radiation monitored in this spectral region results primarily from emission in the 250 to 500 millibar region of the upper troposphere. The THIR 6.7 micron observations are readily available in photofacsimile imagery form which shows very distinctive patterns associated with spatial variations in atmospheric water vapor. These radiometric observations were combined in several instances with moisture values measured in the upper troposphere by the standard radiosonde network. In each instance, the result is a much more consistent analysis showing increased spatial detail that agrees with the radiometric observations and does not compromise the conventional data. The improved moisture analyses show relatively dry and moist tongues that are very difficult or impossible to infer from the conventional data alone. The patterns in the moisture fields can be tracked over 12 and 24 hour periods. In addition, by keeping in mind the advective properties of the moisture field, success was achieved in improving streamline analyses at the 400 mb level over data sparse regions on a global scale.

Steranko, J.↗

Application of Nimbus 4 THIR 6.7-micron observations to regional and global moisture and wind field analyses.

The Nimbus 4 temperature-humidity infrared radiometer (THIR) monitors radiation in the 6.5 to 7.2-micron water vapor absorption region with a 23-km spatial resolution at the subsatellite point. Radiation monitored in this spectral region results primarily from emission in the 250 to 500-mb region of the upper troposphere. The THIR 6.7-micron observations are readily available in photofacsimile imagery form which shows very distinctive patterns associated with spatial variations in atmospheric water vapor. These radiometric observations have been combined in several instances with moisture values measured in the upper troposphere by the standard radiosonde network. In each instance, the result is a much more consistent analysis showing increased spatial detail that agrees with the radiometric observations and does not compromise the conventional data. The improved moisture analyses show relatively dry and moist tongues that are very difficult or impossible to infer from the conventional data alone.

Steranka, J.↗

Monitoring of ground water table depth and soil moisture at the Point Reyes field site

Ground water table (GWT) depth and soil moisture (SM) have been monitored at several locations at the Point Reyes field site (Californian coastal grassland) from 2021 to 2024. Monitoring is still on-going and data may be added to this archive at later time. The SM data have been acquired using Teros 12 Meter soil moisture sensors placed at 10, 30, 60 and 90 cm depth at 5 locations along a small hillslope. These sensors also collect soil temperature and bulk conductance. In addition, some collocated sensors provide pore pressure and Photochemical Reflectance Index (PRI). The GWT depth has been inferred from various type of Onset pressure transducers. The pressure measurements have been corrected for atmospheric pressure variations and sensor position relative to the ground surface to infer GWT depth, as well as with RTK GPS data to infer GWT elevation. The GWT data have been acquired at 5 distinct locations from 2020 to 2024 with the sensors placed at about 4 m depth. In addition, GWT data has been acquired for the 2023-2024 period with sensors located in 1 m deep shallow wells installed near each deeper well. This data is intended to evaluate possibly different dynamic in shallow (perched) and deep aquifer. The datasets are all provided in csv format. Please note that the interpretation of the GWT data needs to be done with consideration of environmental and well characteristics at the site and uncertainty in various variables. For more information on GWT and SM data, please contact the author.

54 ENVIRONMENTAL SCIENCES↗

Evaluation of a fault tolerant system for an integrated avionics sensor configuration with TSRV flight data

The performance analysis results of a fault inferring nonlinear detection system (FINDS) using sensor flight data for the NASA ATOPS B-737 aircraft in a Microwave Landing System (MLS) environment is presented. First, a statistical analysis of the flight recorded sensor data was made in order to determine the characteristics of sensor inaccuracies. Next, modifications were made to the detection and decision functions in the FINDS algorithm in order to improve false alarm and failure detection performance under real modelling errors present in the flight data. Finally, the failure detection and false alarm performance of the FINDS algorithm were analyzed by injecting bias failures into fourteen sensor outputs over six repetitive runs of the five minute flight data. In general, the detection speed, failure level estimation, and false alarm performance showed a marked improvement over the previously reported simulation runs. In agreement with earlier results, detection speed was faster for filter measurement sensors soon as MLS than for filter input sensors such as flight control accelerometers.

Caglayan, A. K.↗

Effect of DCB extraction on Mossbauer and spectral data for a Hawaiian palagonitic soil (PN-9): Iden tification of pigmentary phases

The study of palagonitic soils is an active area of research in martian geoscience because the spectral and magnetic properties of a subset are spectral and/or magnetic analogues of martian bright regions. An understanding of the composition, distribution, and mineralogy of ferric-bearing phases for palagonitic soils forms, through spectral and magnetic data, a basis for inferring the nature of ferric-bearing phases on Mars. Progress has been made in this area, but the data set is incomplete, especially with respect to the nature of pigmenting phases. The purpose of this study is to identify the nature of the pigment for Hawaiian palagonitic soil PN-9 by using extraction procedures to selectively remove iron oxide phases. This soil was collected at the same locale as samples Hawaii 34 and VOL02. All three soils are good spectral analogues for martian bright regions.

Morris, Richard V.↗

Constraining solar electron number density via neutrino flavor data at Borexino

Understanding the physics of the deep solar interior, and the more exotic environs of core-collapse supernovae (CCSN) and binary neutron-star (NS) mergers, is of keen interest in many avenues of research. To date, this physics is based largely on simulations via forward integration. While these simulations provide valuable constraints, it could be insightful to adopt the "inverse approach" as a point of comparison. Within this paradigm, parameters of the solar interior are not output based on an assumed model, but rather are inferred based on real data. Here, we take the specific case of solar electron number density, which historically is taken as output from the standard solar model. We show how one may arrive at an independent constraint on that density profile based on available neutrino flavor data from the Earth-based Borexino experiment. The inference technique's ability to offer a unique lens on physics can be extended to other datasets, and to analogous questions for CCSN and NS mergers, albeit with simulated data.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Cholesky-based experimental design for Gaussian process and kernel-based emulation and calibration.

Gaussian processes and other kernel-based methods are used extensively to construct approximations of multivariate data sets. The accuracy of these approximations is dependent on the data used. This paper presents a computationally efficient algorithm to greedily select training samples that minimize the weighted L p error of kernel-based approximations for a given number of data. The method successively generates nested samples, with the goal of minimizing the error in high probability regions of densities specified by users. The algorithm presented is extremely simple and can be implemented using existing pivoted Cholesky factorization methods. Training samples are generated in batches which allows training data to be evaluated (labeled) in parallel. For smooth kernels, the algorithm performs comparably with the greedy integrated variance design but has significantly lower complexity. Numerical experiments demonstrate the efficacy of the approach for bounded, unbounded, multi-modal and non-tensor product densities. We also show how to use the proposed algorithm to efficiently generate surrogates for inferring unknown model parameters from data using Bayesian inference.

97 MATHEMATICS AND COMPUTING↗

Assessing the cumulative effects of nearshore habitat restoration actions for multiple populations of juvenile salmon in Whidbey Basin, Washington: foundation and approach for synthesis and evaluation

Ecosystem restoration is a common tool for re-establishing ecosystem processes, structures, and functions to improve biodiversity and services in coastal and estuarine ecosystems. In the Salish Sea, salmon habitats have been fragmented, reduced in size, and diminished in quality, and the ecosystem processes that form and sustain these habitats have been degraded and disrupted as well. This loss is especially prevalent in estuaries, where up to 90% of former salmon habitat has been lost or compromised. Salmon species are integral to the identities and cultures of people in the Pacific Northwest, yet salmon abundances remain at historic lows, especially in urbanized areas. Recent investments in restoration are creating rearing habitat and repairing lost ecosystem function. However, restoration efforts in this region have largely proceeded at the site scale, with less attention to big-picture thinking regarding how restoration will effectively recover degraded or lost habitats for target species. As a result, no landscape-scale evaluation program exists, and the cumulative benefits of multiple interventions are unknown. We describe innovative methods for science synthesis related to the evaluation of cumulative effects of ecosystem restoration for Pacific salmon, using years of existing, but disparate data. Building from previous work on cumulative effects evaluation and incorporating a hierarchy of hypotheses approach, we propose using causal inference across numerous hypotheses in a framework to assess the cumulative benefits to Pacific salmon from multiple estuarine restoration projects. We present the framework as a method that can be used to address many complex questions and provide examples from the Salish Sea where the approach is being implemented. The framework draws on science synthesis from numerous fields and uses a hierarchy of hypotheses, causal analysis at multiple scales, and a new hierarchy of synthesis for assessing multiple lines of evidence documenting restoration effects on Pacific salmon. We propose causal inference to synthesize dissimilar data streams, in our case, to identify various manifestations of cumulative effects of restoration and benefits to salmon, and to further inform restoration and recovery planning. A unifying framework would allow for the detection of thresholds at which restoration provides measurable improvement and would greatly advance understanding of the effects of restoration on ecosystems.

59 BASIC BIOLOGICAL SCIENCES↗