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At least 541 records · Page 30

JGI Genomic Single-cell Assembly Workflow

JIGSAW is a software package disigned to quality control and assemble genomic DNA sequences from single-cell bacterial and archaeal genomes. Amplification of singel-cell genomes using multiple displacement amplification technology presents challenges that magnify the amount of contaminants in the sample and produce non uniform depth of sequence coverage. these factors pose problems whan assembling the genomic data using currently availible short read assembles. The software addresses these problems by removing contaminants and normalizing the sequence read coverage prior to assemble. A hybrid assembly approach using two different open source genome assembly tools is then applied to piece together the DNA fragments. Additional reporting of QC metrics for the input sample and the genome assembly is provided for further analysis.

Trong, S.↗

Web Extensible Display Manager 2

The Web Extensible Display Manager (WEDM) was first deployed at Jefferson Lab (JLab) in 2016 with the goal of rendering Extensible Display Manager (EDM) control screens on the web for the benefit of accessibility, and with version 2 our aim is to provide a more general purpose display toolkit by freeing ourselves from the constraints of the EDM dependency. Over the last few years WEDM has been extensively used at JLab for 24/7 information kiosks, on-call monitoring, and by remote users and staff. The software has also been deployed to Oak Ridge National Laboratory, and has become more robust as many bug fixes and contributions have been added. However, adoption and utility of the software as a general purpose control system display manager is limited by EDM, which is no longer actively maintained. A new toolkit can be built on modern frameworks, fully embrace web conventions and standards, and support multiple control system data sources. This new version is a result of a technology review and selection, and introduces a web inspired display file format, a web based display builder, new widgets, and a data interface intended to support pluggable data.

Slominski, R. J.↗

Phasor Based Control with the Distributed, Extensible Grid Control Platform

This paper describes how to implement Phasor Based Control (PBC) using the Distributed, Extensible Grid Control (DEGC) Platform. PBC is a novel method for controlling distributed energy resources (DER) that coordinates a centralized optimization with distributed feedback controllers to enforce voltage phasor targets. DEGC is an open source software and communication platform designed for general DER control. We deployed PBC at Lawrence Berkeley Lab's FLEXLAB test site, conducting multiple hardware-in-the-loop test runs. Here, we describe how DEGC was used to implement PBC on hardware, and results demonstrating successful deployment.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Requirements for Robust DERMS Control and Cyber Attack Scenarios

A Distribution Management System (DMS) is responsible for monitoring and maintaining the health of a distribution grid. Common DMS applications include fault location isolation and service restoration, on-line power flow (OLPF), volt/VAR optimization (VVO), and switch order management. These systems were developed primarily in the area of top-down, unidirectional power flow, with large centralized generating plants moving electricity through the transmission grid and into the distribution grid from and thence to consumers. The recent and ongoing addition of distributed energy resources (DER) to the grid, including rooftop and community solar and wind, means that power is now flowing into the distribution grid from the edge, which complicates the functioning of the DMS. To ameliorate this problem, DMS use distributed energy resource management systems (DERMS) to control DER such as solar inverters. DERMS comprise software management tools that allow management and near real-time control of an array of DER. DERMS control devices and grid services including smart inverters, capacitor banks, on-load tap changes, voltage regulators, and customer loads.

14 SOLAR ENERGY↗

Operating displays - new concept: high performance displays - 118

New control rooms in Nuclear Power Plants using digital Distributed Control System (DCS) operated with software displays, are providing thousands of signals to the operating crew. When an event happens, the Flood of information provided to operators could obscure the initiator event increasing the operator response time, work load and complicating the selection of the actions to be performed. There are some initiatives that are trying to minimize the 'avalanche effect' as the alarm engineering filtering and prioritization or diagnostic displays. Likewise, new control rooms are lost the availability to know the plant status just with a quick glance to the panel indicators. Regarding Small Modular Reactors, where in some cases four operators should monitor and control twelve reactors, these problems are even more significant. The challenge is to find a solution, based on current digital systems, that supply information to operators in order to prevent events and take early actions to minimize or avoid any unexpected incident. In order to minimize human errors, Tecnatom has developed a specific set of displays, called 'High Performance Displays' (HPD) based on objectives, work environment limitation, and non-anticipated events. These displays are being design following the HFE standards: applying the NUREG-0711 elements to identify the information that they have to content and the NUREG-0700 to design the interface. The function of these displays is monitoring the plant situation in a way that the operators are able to recognize any potential event at a simple glance but controlling thousands of signals through pattern recognition, symmetries, regular polygons and colors. The objective of the HPD is to provide an integrated function minimizing the tunnel effect and reduce the workload during the diagnosis phase. Moreover, HPD enhance operators to take the right actions to anticipate the response to any event, even avoiding it, if possible This paper analyzes how HPD's have been design as well as presents the results of a preliminary validation of their capabilities. The preliminary validation is a reduce validation in a full scope simulator running two representative scenarios of abnormal and emergency operation. The analysis is focused on the first stage of the event, i.e. the detection phase, HPD's have been installed in a generic full scope simulator of a nuclear power plant, digital controlled. Both scenarios have been performed by two different operator crews. The first operator shift has worked with the conventional human machine interface, that is, displays similar to the ones currently installed in existing nuclear power plant with digital control. The second crew, reproduce the same scenarios but with HPD available. The studio collects preliminary data in order to compare results, draw lesson learned from the experience to improve HPD design, and find solutions in terms of reducing human errors, human workload, and increase the availability of the plant. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Accurate Consensus-based Distributed Averaging with Variable Time Delay in Support of Distributed Secondary Control Algorithms

We report that distributed secondary control has been widely used in hierarchical control structures, where multiple distributed generators (DGs) need to coordinate to regulate system voltage and frequency. In these systems, consensus algorithms determine the average of a group of dynamic states (e.g. voltages measured by a group of DGs). To be useful, consensus algorithms must be computationally efficient, stable and accurate. In practice, numerous practical implementation challenges significantly affect the consensus equilibrium. In this paper, we quantify the accuracy deviations of the distributed average observer algorithms proposed in the literature to demonstrate the problems with the state-of-the-art distributed averaging techniques. A novel approach is proposed that achieves accurate average tracking in the presence of time-varying communication delays among agents. In our implementation, time synchronization of all distributed controllers is enabled by a novel software platform, called Resilient Information Architecture Platform for the Smart Grid (RIAPS). The proposed distributed average observer is implemented on hardware controllers and its effectiveness is validated in a controller hardware-in-the-loop testbed.

24 POWER TRANSMISSION AND DISTRIBUTION↗

WE-FG-BRA-04: A Portable Confocal Microscope to Image Live Cell Damage Response Induced by Therapeutic Radiation

Purpose: To construct a custom and portable fluorescence confocal laser-scanning microscope (FCLSM) that can be placed in the path of therapeutic radiation beams to study real-time radiation-induced damage response in live cells. Methods: We designed and constructed a portable FCLSM with three laser diodes for excitation (405, 488, and 635 nm). An objective lens focuses the excitation light and collects fluorescence from the sample. A pair of galvanometer mirrors scans/collects the laser beam/fluorescence along the focal plane (x/y-directions). A stepper motor stage scans in the axial direction and positions the x/y of the image field. Barrier filters and dichroic mirrors are used to route the spectral emission bands to the appropriate photodetector. An avalanche photodiode collects near-infrared fluorescence; a photodiode collects back-reflected 635 nm light; and a photomultiplier tube collects green fluorescence in the range of eGFP/eYFP. A 200-µm diameter pinhole was used to implement the confocal geometry for near-infrared and red channels and a 150-µm diameter pinhole for the green channel. Data acquisition and system control were achieved using a high-throughput data acquisition card. In-house software developed in LabVIEW was used to control the hardware, collect data from the photodetectors and reconstruct the confocal images. Results: 6 frames/s can be acquired for a 25 µm{sup 2} (128×128 pixels) field of view, visualizing the entire volume of the cell nucleus (∼10 µm depth) in <10 s. To demonstrate the usefulness of our FCLSM, we imaged gold nanoshells in live cells, radiation-induced damage in fibrosarcoma cells expressing eGFP tagged to a DNA repair protein, and neurons expressing eGFP. The system can also image particle tracks in fluorescent nuclear track detectors. Conclusion: We developed a versatile and portable FCLSM that allows radiobiology studies in live cells exposed to therapeutic radiation. The FCLSM can be placed in any vertical beam line for top-to-bottom exposures. This research was supported by the Sister Institution Network Fund and the Center for Radiation Oncology Research at The University of Texas MD Anderson Cancer Center and Cancer Prevention and Research Institute of Texas. Gabriel Sawakuchi has research support from Elekta Inc.

60 APPLIED LIFE SCIENCES↗

Adaptive Time Step Control for Multirate Infinitesimal Methods

Multirate methods have been used for decades to temporally evolve initial-value problems in which different components evolve on distinct time scales, and thus use of different step sizes for these components can result in increased computational efficiency. Generally, such methods select these different step sizes based on experimentation or stability considerations. For problems that evolve on a single time scale, adaptivity approaches that strive to control local temporal error are widely used to achieve numerical results of a desired accuracy with minimal computational effort, while alleviating the need for manual experimentation with different time step sizes. However, there is a notable gap in the publication record on the development of adaptive time step controllers for multirate methods. In this paper, we extend the single-rate controller work of Gustafsson [ACM Trans. Math. Software, 20 (1994), pp. 496-517] to the multirate method setting. Specifically, we develop controllers based on polynomial approximations to the principal error functions for both the "fast" and "slow" time scales within multirate infinitesimal (MRI) methods. We additionally investigate a variety of approaches for estimating the errors arising from each time scale within MRI methods. We then numerically evaluate the proposed multirate controllers and error estimation strategies on a range of multirate test problems, comparing their performance against an estimated optimal performance. Through this work, we combine the most performant of these approaches to arrive at a set of multirate adaptive time step controllers that robustly achieve desired solution accuracy with minimal computational effort.

97 MATHEMATICS AND COMPUTING↗

ML based control systems for nuclear physics experiments

The Experimental Physics Software and Computing Infrastructure (EPSCI) group at Jefferson Lab is leading the use of machine learning (ML) to enhance control systems in nuclear physics experiments. Collaborating closely with domain experts and data scientists, we have developed an ML-based control system that uses a Gaussian process to dynamically adjust the high voltage of the GlueX Central Drift Chamber. This results in stable detector performance by adapting to environmental changes, thereby reducing the offline calibration effort. Furthermore, we are developing ML-driven systems for optimizing the polarization of photon beams and polarized cryotargets. These systems will maintain the optimal microwave frequency in cryogenic targets and make real-time adjustments to diamond radiators for polarized photon sources, tasks traditionally handled by human operators. By automating these functions, we aim to optimize the polarization, reduce downtime, and minimize human error. This talk will highlight the development of reliable ML-based control systems and the policies to ensure they are both effective and trustworthy.

Jeske, Torri↗

Software Quality Assurance Plan: Cardinal

The Cardinal Software Quality Assurance (SQA) Program aims to provide the controls and processes necessary to enable continuous, high-quality software development while meeting user and program sponsor requirements. This SQA Plan (SQAP) delineates the SQA Program framework for Cardinal by describing the Program activities, organization, and documentation, and by clearly defining the interconnection of all Program items. It should be noted that this SQAP is aligned with the current version of the Argonne Quality Assurance Program Plan, which was designed to align with DOE O 414.1D. This SQAP is also aligned with the revision 10 of the SQAP for MOOSE and MOOSE-based applications.

97 MATHEMATICS AND COMPUTING↗

Use of collaboration software to improve nuclear power plant outage management

Nuclear Power Plant (NPP) refueling outages create some of the most challenging activities the utilities face in both tracking and coordinating thousands of activities in a short period of time. Other challenges, including nuclear safety concerns arising from atypical system configurations and resource allocation issues, can create delays and schedule overruns, driving up outage costs. Today the majority of the outage communication is done using processes that do not take advantage of advances in modern technologies that enable enhanced communication, collaboration and information sharing. Some of the common practices include: runners that deliver paper-based requests for approval, radios, telephones, desktop computers, daily schedule printouts, and static whiteboards that are used to display information. Many gains have been made to reduce the challenges facing outage coordinators; however; new opportunities can be realized by utilizing modern technological advancements in communication and information tools that can enhance the collective situational awareness of plant personnel leading to improved decision-making. Ongoing research as part of the Light Water Reactor Sustainability Program (LWRS) has been targeting NPP outage improvement. As part of this research, various applications of collaborative software have been demonstrated through pilot project utility partnerships. Collaboration software can be utilized as part of the larger concept of Computer-Supported Cooperative Work (CSCW). Collaborative software can be used for emergent issue resolution, Outage Control Center (OCC) displays, and schedule monitoring. Use of collaboration software enables outage staff and subject matter experts (SMEs) to view and update critical outage information from any location on site or off.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

FPGA-Based Optical Cavity Phase Stabilization for Coherent Pulse Stacking

Coherent pulse stacking (CPS) is a new time-domain coherent addition technique that stacks several optical pulses into a single output pulse, enabling high pulse energy from fiber lasers. We develop a robust, scalable, and distributed digital control system with firmware and software integration for algorithms, to support the CPS application. We model CPS as a digital filter in the Z domain and implement a pulse-pattern-based cavity phase detection algorithm on an field-programmable gate array (FPGA). A two-stage (2+1 cavities) 15-pulse stacking system achieves an 11.0 peak-power enhancement factor. Each optical cavity is fed back at 1.5kHz, and stabilized at an individually-prescribed round-trip phase with 0.7deg and 2.1deg rms phase errors for Stages 1 and 2, respectively. Optical cavity phase control with nanometer accuracy ensures 1.2% intensity stability of the stacked pulse over 12 h. The FPGA-based feedback control system can be scaled to large numbers of optical cavities.

43 PARTICLE ACCELERATORS↗

Commercial Building Technology Demonstration (Final Scientific/Technical Report)

The background for this project was a unique and innovative concept that had been proposed and demonstrated by enVerid Systems, reducing the energy consumption in HVAC systems in commercial and public buildings by up to 50% at peak loads. The concept involves selective scrubbing of gas contaminants from indoor air as a practical substitute for outside air ventilation, the latter being the conventional practice today. This scrubbing enables recycling of most of the indoor air and significantly decreasing the amount of outside air, resulting in a reduced HVAC load and commensurate energy savings for the facility. Key to our approach is low cost scrubbing of all gas contaminants from indoor air using novel, efficient and regenerable sorbent materials. The total solution, labeled HLR (HVAC Load Reduction) is implemented by means of compact modules that can be retrofitted onto virtually any building, and utilizes novel sorbents that have been developed and brought to scale production by enVerid. Although the technology had been deployed and demonstrated, the US commercial building and HVAC markets, famously conservative with respect to innovation and new technologies, had yet to embrace the idea or the product. The overarching goal of the project was to help overcome market hesitancy and enable widespread adoption, by creating a critical mass of success stories across different regions and building types, all under oversight and verification of the DOE and NREL, to ensure credibility and accuracy. The project, overall, was a resounding success. Several installations were deployed and tested comprehensively for the impact on both energy consumption and indoor air quality, and results were not only excellent, but quantitatively in line with expectations. A total number of eight (8) installations were attempted, with 2 aborted due to building issues. Of the six successful installations, however, complete M&V was performed by NREL on 2 (Miami and NYC) and partial analysis on a third site (ArcBest), and these three, along with their results, were therefore presented from a financial and reporting standpoint. Although the number of case studies fell short of the original target of 10, we nevertheless had excellent demonstrations in vastly different climate zones: Southeast, Northeast and Midwest, and in very different building types. This included a modern high-rise office building in New York City and a University Campus health center in Miami, and a mid-rise high-density office in Arkansas. The cooling load reduction was shown to be significant, averaging 37% during the final cooling season in the Miami site. In the NYC site, the cooling energy savings were generally less, at around 12%, as expected. While this is a lower number for average/total savings, two comments are important to note: (i) the outside airflow (OA) reduction was not consistent during the data collection period, at least in part understating the attainable savings through incorrect measurement of the “high energy” reference state; and (ii) the peak impact in NYC is almost certainly as high as Miami, with critical ramifications for peak load reduction and equipment downsizing ability. Importantly, the measured energy savings in all locations were related to the outdoor climate conditions and the actual achievable reduction in outside air, very much in line with models and calculations; this leaves us with increased confidence in our understanding of the interaction between the technology and the building, and our ability to project the impact of this innovation in the future, through broad adoption. Simply put: the energy savings and load reduction impact of the HLR solution has been confirmed quantitatively. The results also confirmed the air quality objective. This may be even more significant, in that air quality is more complex and harder to measure and quantify, and the performance of the HLR as an air scrubber is the linchpin of the entire solution. In all sites, indoor air quality met or exceeded the required parameters, in terms of achieving the target (low) levels of indoor pollutants. Furthermore, the concentrations of outdoor sourced pollutants were markedly lower, as expected, mostly due to the reduction in outside air intake although in part also due to the scrubbing. The success was not immediate nor easy, and early challenges with the systems, especially (but not only) around controls and communication, caused delays in commissioning and undermined some of our M&V schedules. The good news is no fundamental issues were encountered and the number of such glitches was declining quickly by the end of the project. Other challenges had to do with coordinating the control of the building OA dampers, which the HLR needs to have in order to deliver the load reduction, but which the facility manager controls regularly and independently. This is not necessarily a problem for normal HLR operation but interferes with accurate M&V, where switching OA settings back and forth on a precise timetable is essential for clean data. The project provided valuable experience in retrofitting buildings that had been originally designed to operate with less recirculation and more outside air, and some key learnings related to the cyclical regeneration of the sorbents in the operational environment of the building. Some of these learnings gave already been incorporated into ongoing improvements in the design of the HLR module as well as the software that is used to control its operation. The cost and time of retrofit installations is much better understood; so is the test and balance procedure of the building that determines the available range of outside air reduction, which in turn determines the amount of load reduced. We had also implemented at least one annual cycle of sorbent cartridge replacement in the field, after which we tested the used sorbent to assess the rate of degradation of sorbent potency – an important factor affecting the long-term economics of HLR deployments. A notable shortfall of the project, other than the fact that the number of sites was below target, was that we had not (yet) completed testing to measure and verify (M&V) the winter energy savings. This is primarily due to late start on the NYC sites (Miami does not portend any heating savings associated with reduced outside air), combined with the issues of OA damper control. It is by no means suggested that such savings cannot be captured, only that the M&V with respect to winter in NYC has been incomplete. The value of this project and its interest to the general public are hard to overstate. The case studies created from Miami and especially from NYC have, without a doubt, opened up the interest of the broad HVAC industry to HLR in the past year. Major manufacturer reps have signed up to represent and promote the product, and dozens of top tier engineering consultants have introduced HLR as a base of design in upcoming construction and renovation projects – precisely the overarching goal of this project. These would not have happened without the highly visible installation in NYC and its ultimately satisfied customer. Furthermore, the DOE itself issued a report in late 2017 analyzing hundreds of candidate technologies for reducing energy consumption in HVAC; remarkably, the budding HLR solution ranked among the top 3(!); no doubt, its status as a viable and significant contender on this list is informed by the success of these demonstrations. And furthermore, in the wake of these demos, several major energy utilities, led by ConEdison in NYC, have endorsed the HLR solution and now routinely provide substantial cash rebates for customers choosing to incorporate the HLR in their buildings and reap the benefit of the reduced peak load as well as reduced cumulative energy demand. Last but not least, in January of 2019, as this report was being written, the HLR module won the AHR Expo Innovation Award for Green Buildings and, remarkably, the prestigious and only Product of the Year 2019, being selected by an independent professional panel of judges from AHR and ASHRAE. Given the confirmation of the enormous energy saving potential of HLR in widescale deployment, as well as ancillary but significant benefits in terms of equipment downsizing and indoor air quality, the benefit of this effort to the public speaks for itself. Accelerating adoption of HLR, without dependence on subsidies and driven by the private sector, is well under way. There is still much work to be done in terms of educating the HVAC and construction ecosystems and improving the product’s robustness and simplicity, to further facilitate the adoption of this technology and the capture of its potential value. But the American public will greatly benefit both directly and indirectly in the immediate future and beyond.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Systematic and objective evaluation of Earth system models: PCMDI Metrics Package (PMP) version 3

Systematic, routine, and comprehensive evaluation of Earth system models (ESMs) facilitates benchmarking improvement across model generations and identifying the strengths and weaknesses of different model configurations. By gauging the consistency between models and observations, this endeavor is becoming increasingly necessary to objectively synthesize the thousands of simulations contributed to the Coupled Model Intercomparison Project (CMIP) to date. The Program for Climate Model Diagnosis and Intercomparison (PCMDI) Metrics Package (PMP) is an open-source Python software package that provides quick-look objective comparisons of ESMs with one another and with observations. The comparisons include metrics of large- to global-scale climatologies, tropical inter-annual and intra-seasonal variability modes such as the El Niño–Southern Oscillation (ENSO) and Madden–Julian Oscillation (MJO), extratropical modes of variability, regional monsoons, cloud radiative feedbacks, and high-frequency characteristics of simulated precipitation, including its extremes. The PMP comparison results are produced using all model simulations contributed to CMIP6 and earlier CMIP phases. An important objective of the PMP is to document the performance of ESMs participating in the recent phases of CMIP, together with providing version-controlled information for all datasets, software packages, and analysis codes being used in the evaluation process. Among other purposes, this also enables modeling groups to assess performance changes during the ESM development cycle in the context of the error distribution of the multi-model ensemble. Quantitative model evaluation provided by the PMP can assist modelers in their development priorities. In this paper, we provide an overview of the PMP, including its latest capabilities, and discuss its future direction.

54 ENVIRONMENTAL SCIENCES↗

Active Power and Flux Control of a Self-Excited Induction Generator for a Variable-Speed Wind Turbine Generation

A Self-Excited Induction Generation (SEIG) for a variable speed wind turbine generation(VS-WG) is normally considered to be a good candidate for implementation in stand-alone applications such as battery charging, hydrogenation, water pumping, water purification, water desalination, and etc. In this study, we have examined a study on active power and flux control strategies for a SEIG for a variable speed wind turbine generation. The control analysis for the proposed system is carried out by using PSCAD software. In the process, we can optimize the control design of the system, thereby enhancing and expediting the control design procedure for this application. With this study, this control design for a SEIG for VS-WG can become the industry standard for analysis and development in terms of SEIG.

17 WIND ENERGY↗