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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 541 records · Page 30
All sourcesNASA NTRSDOE OSTI
DOE OSTI2018

A Publicly Available Landscape Analysis Tool for Biodefense Policy

Outbreaks of infectious diseases, coupled with an increasing biological threat from non-state actors, highlight the continued need to prioritize biodefense. The Blue Ribbon Panel on Biodefense has noted that the US remains ‘underprepared’ for a catastrophic biological attack or pandemic and emphasized increased coordination is essential. Consistent with this recommendation, the FY17 National Defense Authorization Act tasked the Secretaries of Defense, Health and Human Services, Homeland Security, and Agriculture to “jointly develop a national biodefense strategy and associated implementation plan, which shall include a review and assessment of biodefense policies, practices, programs and initiatives.”

Omberg, Kristin M.↗
DOE OSTI2014

The availability of filament ends modulates actin stochastic dynamics in live plant cells

A network of individual filaments that undergoes incessant remodeling through a process known as stochastic dynamics comprises the cortical actin cytoskeleton in plant epidermal cells. From images at high spatial and temporal resolution, it has been inferred that the regulation of filament barbed ends plays a central role in choreographing actin organization and turnover. How this occurs at a molecular level, whether different populations of ends exist in the array, and how individual filament behavior correlates with the overall architecture of the array are unknown. Here we develop an experimental system to modulate the levels of heterodimeric capping protein (CP) and examine the consequences for actin dynamics, architecture, and cell expansion. Significantly, we find that all phenotypes are the opposite for CP-overexpression (OX) cells compared with a previously characterized cp-knockdown line. Specifically, CP OX lines have fewer filament–filament annealing events, as well as reduced filament lengths and lifetimes. Further, cp-knockdown and OX lines demonstrate the existence of a subpopulation of filament ends sensitive to CP concentration. Finally, CP levels correlate with the biological process of axial cell expansion; for example, epidermal cells from hypocotyls with reduced CP are longer than wild-type cells, whereas CP OX lines have shorter cells. On the basis of these and other genetic studies in this model system, we hypothesize that filament length and lifetime positively correlate with the extent of axial cell expansion in dark-grown hypocotyls.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Moderate high temperature is beneficial or detrimental depending on carbon availability in the green alga Chlamydomonas reinhardtii

High temperatures impair plant growth and reduce agricultural yields, but the underlying mechanisms remain elusive. The unicellular green alga Chlamydomonas reinhardtii is an excellent model to study heat responses in photosynthetic cells due to its fast growth rate, many similarities in cellular processes to land plants, simple and sequenced genome, and ample genetic and genomics resources. Chlamydomonas grows in light by photosynthesis and with externally supplied acetate as an organic carbon source. Understanding how organic carbon sources affect heat responses is important for the algal industry but remains understudied. We cultivated wild-type Chlamydomonas under highly controlled conditions in photobioreactors at 25 °C (control), 35 °C (moderate high temperature), or 40 °C (acute high temperature) with or without constant acetate supply for 1 or 4 day. Treatment at 35 °C increased algal growth with constant acetate supply but reduced algal growth without sufficient acetate. The overlooked and dynamic effects of 35 °C could be explained by induced acetate uptake and metabolism. Heat treatment at 40 °C for more than 2 day was lethal to algal cultures with or without constant acetate supply. Furthermore, our findings provide insights to understand algal heat responses and help improve thermotolerance in photosynthetic cells.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Specialization Restricts the Evolutionary Paths Available to Yeast Sugar Transporters

Functional innovation at the protein level is a key source of evolutionary novelties. The constraints on functional innovations are likely to be highly specific in different proteins, which are shaped by their unique histories and the extent of global epistasis that arises from their structures and biochemistries. These contextual nuances in the sequence–function relationship have implications both for a basic understanding of the evolutionary process and for engineering proteins with desirable properties. Here, we have investigated the molecular basis of novel function in a model member of an ancient, conserved, and biotechnologically relevant protein family. These Major Facilitator Superfamily sugar porters are a functionally diverse group of proteins that are thought to be highly plastic and evolvable. By dissecting a recent evolutionary innovation in an α-glucoside transporter from the yeast Saccharomyces eubayanus, we show that the ability to transport a novel substrate requires high-order interactions between many protein regions and numerous specific residues proximal to the transport channel. To reconcile the functional diversity of this family with the constrained evolution of this model protein, we generated new, state-of-the-art genome annotations for 332 Saccharomycotina yeast species spanning ~400 My of evolution. By integrating phylogenetic and phenotypic analyses across these species, we show that the model yeast α-glucoside transporters likely evolved from a multifunctional ancestor and became subfunctionalized. The accumulation of additive and epistatic substitutions likely entrenched this subfunction, which made the simultaneous acquisition of multiple interacting substitutions the only reasonably accessible path to novelty.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Iron Availability within the Leaf Vasculature Determines the Magnitude of Iron Deficiency Responses in Source and Sink Tissues in Arabidopsis

Abstract Iron (Fe) uptake and translocation in plants are fine-tuned by complex mechanisms that are not yet fully understood. In Arabidopsis thaliana, local regulation of Fe homeostasis at the root level has been extensively studied and is better understood than the systemic shoot-to-root regulation. While the root system is solely a sink tissue that depends on photosynthates translocated from source tissues, the shoot system is a more complex tissue, where sink and source tissues occur synchronously. In this study, and to gain better insight into the Fe deficiency responses in leaves, we overexpressed Zinc/Iron-regulated transporter-like Protein (ZIP5), an Fe/Zn transporter, in phloem-loading cells (proSUC2::AtZIP5) and determined the timing of Fe deficiency responses in sink (young leaves and roots) and source tissues (leaves). Transgenic lines overexpressing ZIP5 in companion cells displayed increased sensitivity to Fe deficiency in root growth assays. Moreover, young leaves and roots (sink tissues) displayed either delayed or dampened transcriptional responses to Fe deficiency compared to wild-type (WT) plants. We also took advantage of the Arabidopsis mutant nas4x-1 to explore Fe transcriptional responses in the opposite scenario, where Fe is retained in the vasculature but in an unavailable and precipitated form. In contrast to proSUC2::AtZIP5 plants, nas4x-1 young leaves and roots displayed a robust and constitutive Fe deficiency response, while mature leaves showed a delayed and dampened Fe deficiency response compared to WT plants. Altogether, our data provide evidence suggesting that Fe sensing within leaves can also occur locally in a leaf-specific manner.

Cell Biology↗
DOE OSTI2026

Exploring the partonic collectivity in small systems at energies available at the CERN Large Hadron Collider

Using the Hydro-Coal-Frag model that combines hydrodynamics at low p T , quark coalescence at intermediate p T , and the LBT transport model at high p T , we study the spectra and elliptic flow of identified hadrons in high multiplicity p–Pb and p–p collisions at the CERN Large Hadron Collider (LHC). In p–Pb collisions, the Hydro-Coal-Frag model gives a good description of the differential elliptic flow over the p T range from 0 to 6 GeV and the approximate number of constituent quark (NCQ) scaling at intermediate p T . Although the Hydro-Coal-Frag model can also roughly describe the elliptic flow in high multiplicity p–p collisions with the quark coalescence process, the larger contribution from the string fragmentations leads to a notable violation of the NCQ scaling of v 2 at intermediate p T as observed in the experiment. Comparison runs of the Hydro-Frag model without the coalescence process demonstrate that regardless the parameter adjustments, the Hydro-Frag model cannot simultaneously describe the p T spectra and the elliptic flow of identified hadrons in either p–Pb collisions or p–p collisions. In conclusion, the calculations in this paper thus provide support for the existence of partonic degrees of freedom and the possible formation of the QGP in the small systems created at the LHC.

Wang, Yuanyuan [Peking University, Beijing (China)↗
DOE OSTI2019

Heavy quarkonia production at energies available at the CERN Large Hadron Collider and future electron-ion colliding facilities using basis light-front quantization wave functions

We study here exclusive charmonium and bottomonium production in ultraperipheral heavy-ion collisions and electron-ion collisions within the dipole picture. We employ heavy quarkonium light-front wave functions obtained within the basis light-front quantization framework, which has some features of the light-front holographic QCD. We focus on comparison with measurements of exclusive charmonium and bottomonium production in ultraperipheral pp, pPb, and PbPb collisions at the CERN Large Hadron Collider and find reasonable agreement with the cross sections. We also discuss the coherent production cross-section ratios of excited states to the ground state for charmonium and bottomonium, which exhibit insensitivity to the dipole model parameters. We demonstrate that electron-ion collisions provide an opportunity for a quantitative study of heavy quarkonium structure.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2020

Bayesian calibration of a hybrid nuclear collision model using $\textit{p}$₋Pb and Pb-Pb data at energies available at the CERN Large Hadron Collider

Here, we posit a unified hydrodynamic and microscopic description of the quark-gluon plasma (QGP) produced in ultrarelativistic p₋Pb and Pb-Pb collisions at $\sqrt{s}_\text{NN}$ = 5.02 TeV and evaluate our assertion using Bayesian inference. Specifically, we model the dynamics of both collision systems using initial conditions with parametric nucleon substructure, a preequilibrium free streaming stage, event-by-event viscous hydrodynamics, and a microscopic hadronic afterburner. Free parameters of the model, which describe the initial state and QGP medium are then simultaneously calibrated to fit charged-particle yields, mean $p_T$, and flow cumulants. We argue that the global agreement of the calibrated model with the experimental data strongly supports the existence of hydrodynamic flow in small collision systems at ultrarelativistic energies, and that the flow produced develops at length scales smaller than a single proton. Posterior estimates for the model's input parameters are obtained, and new insights into the temperature dependence of the QGP transport coefficients and event-by-event structure of the proton are discussed.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2020

Influence of the neutron-skin effect on nuclear isobar collisions at energies available at the BNL Relativistic Heavy Ion Collider

The unambiguous observation of a Chiral Magnetic Effect (CME)-driven charge separation is the core aim of the isobar program at RHIC consisting of $96\atop{40}$Zr+$96\atop{40}$Zr and $96\atop{44}$Ru+$96\atop{44}$Ru collisions at √s NN = 200 GeV. We quantify the role of the spatial distributions of the nucleons in the isobars on both eccentricity and magnetic field strength within a relativistic hadronic transport approach (SMASH, Simulating Many Accelerated Strongly-interacting Hadrons). In particular, we introduce isospin-dependent nucleon-nucleon spatial correlations in the geometric description of both nuclei, deformation for $96\atop{44}$Ru and the so-called neutron skin effect for the neutron-rich isobar i.e. $96\atop{40}$Zr. The main result of this study is a reduction of the magnetic field strength difference between $96\atop{44}$Ru+$96\atop{44}$Ru and $96\atop{40}$Zr+$96\atop{40}$Zr by a factor of 2, from 10% to 5% in peripheral collisions when the neutron-skin effect is included. Further, we find an increase of the eccentricity ratio between the isobars by up to 10% in ultra-central collisions as due to the deformation of $96\atop{44}$Ru while neither the neutron skin effect nor the nucleon-nucleon correlations result into a significant modification of this observable with respect to the traditional Woods-Saxon modeling. Our results suggest a significantly smaller CME signal to background ratio for the experimental charge separation measurement in peripheral collisions with the isobar systems than previously expected.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2020

System-size scan of D meson R AA and v n using PbPb, XeXe, ArAr, and OO collisions at energies available at the CERN Large Hadron Collider

Here, experimental measurements indicate no suppression (e.g. R pPb ~ 1) but a surprisingly large D meson v 2 was measured in pPb collisions. In order to understand these results we use Trento+v-USPhydro+DAB-MOD to make predictions and propose a system size scan at the LHC involving 208 PbPb, 129 XeXe, 40 ArAr, and 16OO collisions. We find that the nuclear modification factor approaches unity as the system size is decreased, but nonetheless, in the 0–10% most central collisions v 2 {2} is roughly equivalent regardless of system size. These results arise from a rather non-trivial interplay between the shrinking path length and the enhancement of eccentricities in small systems at high multiplicity. Finally, we also find a surprising sensitivity of D mesons v 2 {2} in 0–10% at p T = 2–10 GeV to the slight deformation of 129 Xe recently found at LHC.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2021

Charge balance functions for heavy-ion collisions at energies available at the CERN Large Hadron Collider

Heavy-ion collisions at the Large Hadron Collider provide the conditions to investigate regions of quark-gluon plasma that reach higher temperatures and that persist for longer periods of time compared with collisions at the Relativistic Heavy Ion Collider. This extended duration allows correlations from charge conservation to better separate during the quark-gluon plasma phase, and thus be better distinguished from correlations that develop during the hadron phase or during hadronization. Here, charge balance functions binned by relative rapidity and azimuthal angle and indexed by species are considered. A detailed theoretical model that evolves charge correlations throughout the entirety of an event is compared with preliminary results from the ALICE Collaboration. The comparison with experiment provides insight into the evolution of the chemistry and diffusivity during the collision. A ratio of balance functions is proposed to better isolate the effects of diffusion and thus better constrain the diffusivity.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2021

Cumulants and correlation functions of net-proton, proton, and antiproton multiplicity distributions in Au+Au collisions at energies available at the BNL Relativistic Heavy Ion Collider

Here, we report a systematic measurement of cumulants, C n , for net-proton, proton, and antiproton multiplicity distributions, and correlation functions, κ n , for proton and antiproton multiplicity distributions up to the fourth order in Au+Au collisions at $\sqrt{s_{NN}}$ = 7.7, 11.5, 14.5, 19.6, 27, 39, 54.4, 62.4, and 200 GeV. The C n and κ n are presented as a function of collision energy, centrality and kinematic acceptance in rapidity, y, and transverse momentum, p T . The data were taken during the first phase of the Beam Energy Scan (BES) program (2010–2017) at the BNL Relativistic Heavy Ion Collider (RHIC) facility. The measurements are carried out at midrapidity (|y| < 0.5) and transverse momentum 0.4 < p T < 2.0 GeV/c, using the STAR detector at RHIC. We observe a nonmonotonic energy dependence ($\sqrt{s_{NN}}$ = 7.7–62.4 GeV) of the net-proton C 4 /C 2 with the significance of 3.1σ for the 0–5% central Au+Au collisions. This is consistent with the expectations of critical fluctuations in a QCD-inspired model. Thermal and transport model calculations show a monotonic variation with $\sqrt{s_{NN}}$. For the multiparticle correlation functions, we observe significant negative values for a two-particle correlation function, κ 2 , of protons and antiprotons, which are mainly due to the effects of baryon number conservation. Furthermore, it is found that the four-particle correlation function, κ 4 , of protons plays a role in determining the energy dependence of proton C 4 /C 1 below 19.6 GeV, which cannot be understood by the effect of baryon number conservation.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2021

Nonequilibrium kinetic freeze-out properties in relativistic heavy ion collisions from energies employed at the RHIC beam energy scan to those available at the LHC

In this paper, we investigate the kinetic freeze-out properties in relativistic heavy ion collisions at different collision energies. We present a study of standard Boltzmann-Gibbs blast-wave (BGBW) fits and Tsallis blast-wave (TBW) fits performed on the transverse momentum spectra of identified hadrons produced in Au + Au collisions at collision energies of $\sqrt{s_{\rm{NN}}}=$7.7 –200 GeV at the Relativistic Heavy Ion Collider (RHIC), and in Pb + Pb collisions at collision energies of $\sqrt{s_{\rm{NN}}}=$ 2.76 and 5.02 TeV at the Large Hadron Collider (LHC). The behavior of strange and multistrange particles is also investigated. We found that the TBW model describes data better than the BGBW one overall, and the contrast is more prominent as the collision energy increases as the degree of nonequilibrium of the produced system is found to increase. From TBW fits, the kinetic freeze-out temperature at the same centrality shows a weak dependence of collision energy between 7.7 and 39 GeV, while it decreases as collision energy continues to increase up to 5.02 TeV. The radial flow is found to be consistent with zero in peripheral collisions at RHIC energies but sizable at LHC energies and central collisions at all RHIC energies. We also observed that the strange hadrons, with higher temperature and similar radial flow, approach equilibrium more quickly from peripheral to central collisions than light hadrons. The dependence of temperature and flow velocity on nonequilibrium parameter (q - 1) is characterized by two second-order polynomials. Both a and dξ from the polynomials fit, related to the influence of the system bulk viscosity, increase toward lower RHIC energies.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2021

O 16 O 16 collisions at energies available at the BNL Relativistic Heavy Ion Collider and at the CERN Large Hadron Collider comparing α clustering versus substructure

Collisions of . light and heavy nuclei in relativistic heavy-ion collisions have been shown to be sensitive to nuclear structure. With a proposed 16 O 16 O run at the CERN Large Hadron Collider (LHC) and at the BNL Relativistic Heavy Ion Collider (RHIC) we study the potential for finding α clustering in 16 O. Here we use the state-of-the-art iEBE-VISHNU package with 16 O nucleonic configurations from ab initio nuclear lattice simulations. This setup was tuned using a Bayesian analysis on p Pb and PbPb systems. We find that the 16 O 16 O system always begins far from equilibrium and that at LHC and RHIC it approaches the regime of hydrodynamic applicability only at very late times. Finally, by taking ratios of flow harmonics we are able to find measurable differences between α-clustering, nucleonic, and subnucleonic degrees of freedom in the initial state.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2023

3D structure of anisotropic flow in small collision systems at energies available at the BNL Relativistic Heavy Ion Collider

Here, we present (3 + 1)-dimensional [(3 + 1)D] dynamical simulations of asymmetric nuclear collisions at the BNL Relativistic Heavy Ion Collider (RHIC). Employing a dynamical initial state model coupled to (3 + 1)D viscous relativistic hydrodynamics, we explore the rapidity dependence of anisotropic flow in the RHIC small system scan at 200 GeV center-of-mass energy. We calibrate parameters to describe central 3 He + Au collisions and make extrapolations to d + Au and p + Au collisions. Our calculations demonstrate that approximately 50% of the v 3 (p T ) difference between the measurements by the STAR and PHENIX Collaborations can be explained by the use of reference flow vectors from different rapidity regions. This emphasizes the importance of longitudinal flow decorrelation for anisotropic flow measurements in asymmetric nuclear collisions, and the need for (3 + 1)D simulations. We also present results for the beam energy dependence of particle spectra and anisotropic flow in d + Au collisions.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2023

Search for the chiral magnetic wave using anisotropic flow of identified particles at energies available at the BNL Relativistic Heavy Ion Collider

The chiral magnetic wave (CMW) has been theorized to propagate in the deconfined nuclear medium formed in high-energy heavy-ion collisions, and to cause a difference in elliptic flow (v 2 ) between negatively and positively charged hadrons. Experimental data consistent with the CMW have been reported by the STAR Collaboration at the Relativistic Heavy Ion Collider (RHIC), based on the charge asymmetry dependence of the pion v 2 from Au+Au collisions at $\sqrt{s_{NN}}$ = 27 to 200 GeV. In this comprehensive study, we present the STAR measurements of elliptic flow and triangular flow of charged pions, along with the v 2 of charged kaons and protons, as a function of charge asymmetry in Au+Au collisions at $\sqrt{s_{NN}}$ = 27, 39, 62.4 and 200 GeV. The slope parameters extracted from the linear dependence of the v2 difference on charge asymmetry for different particle species are reported and compared in different centrality intervals. In addition, the slopes of v 2 for charged pions in small systems, i.e., p+Au and d+Au at $\sqrt{s_{NN}}$ = 200 GeV, are also presented and compared with those in large systems, i.e., Au+Au at $\sqrt{s_{NN}}$ = 200 GeV and U+U at 193 GeV. Our results provide new insights for the possible existence of the CMW, and further constrain the background contributions in heavy-ion collisions at RHIC energies.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2024

System-size dependence of the hadronic rescattering effect at energies available at the CERN Large Hadron Collider

The first measurements of K * ( 892 ) 0 resonance production as a function of charged-particle multiplicity in Xe-Xe collisions at s N N = 5.44 TeV and p p collisions at s = 5.02 TeV using the ALICE detector are presented. The resonance is reconstructed at midrapidity ( | y | < 0.5) using the hadronic decay channel K * 0 → K ± π ∓ . Measurements of transverse-momentum integrated yield, mean transverse-momentum, nuclear modification factor of K * 0 , and yield ratios of resonance to stable hadron ( K * 0 / K ) are compared across different collision systems ( p p , p -Pb, Xe-Xe, and Pb-Pb) at similar collision energies to investigate how the production of K * 0 resonances depends on the size of the system formed in these collisions. The hadronic rescattering effect is found to be independent of the size of colliding systems and mainly driven by the produced charged-particle multiplicity, which is a proxy of the volume of produced matter at the chemical freeze-out. In addition, the production yields of K * 0 in Xe-Xe collisions are utilized to constrain the dependence of the kinetic freeze-out temperature on the system size using the hadron resonance gas–partial chemical equilibrium model. ©2024 CERN, for the ALICE Collaboration 2024 CERN

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗