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At least 541 records · Page 30

Computing the binding affinity of a ligand buried deep inside a protein with the hybrid steered molecular dynamics

Computing the ligand-protein binding affinity (or the Gibbs free energy) with chemical accuracy has long been a challenge for which many methods/approaches have been developed and refined with various successful applications. False positives and, even more harmful, false negatives have been and still are a common occurrence in practical applications. Inevitable in all approaches are the errors in the force field parameters we obtain from quantum mechanical computation and/or empirical fittings for the intra- and inter-molecular interactions. These errors propagate to the final results of the computed binding affinities even if we were able to perfectly implement the statistical mechanics of all the processes relevant to a given problem. And they are actually amplified to various degrees even in the mature, sophisticated computational approaches. In particular, the free energy perturbation (alchemical) approaches amplify the errors in the force field parameters because they rely on extracting the small differences between similarly large numbers. In this paper, we develop a hybrid steered molecular dynamics (hSMD) approach to the difficult binding problems of a ligand buried deep inside a protein. Sampling the transition along a physical (not alchemical) dissociation path of opening up the binding cavity- -pulling out the ligand- -closing back the cavity, we can avoid the problem of error amplifications by not relying on small differences between similar numbers. We tested this new form of hSMD on retinol inside cellular retinol-binding protein 1 and three cases of a ligand (a benzylacetate, a 2-nitrothiophene, and a benzene) inside a T4 lysozyme L99A/M102Q(H) double mutant. In all cases, we obtained binding free energies in close agreement with the experimentally measured values. This indicates that the force field parameters we employed are accurate and that hSMD (a brute force, unsophisticated approach) is free from the problem of error amplification suffered by many sophisticated approaches in the literature.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

MO-G-17A-04: Internal Dosimetric Calculations for Pediatric Nuclear Imaging Applications, Using Monte Carlo Simulations and High-Resolution Pediatric Computational Models

Purpose: Our purpose is to evaluate the administered absorbed dose in pediatric, nuclear imaging studies. Monte Carlo simulations with the incorporation of pediatric computational models can serve as reference for the accurate determination of absorbed dose. The procedure of the calculated dosimetric factors is described, while a dataset of reference doses is created. Methods: Realistic simulations were executed using the GATE toolkit and a series of pediatric computational models, developed by the “IT'IS Foundation”. The series of the phantoms used in our work includes 6 models in the range of 5–14 years old (3 boys and 3 girls). Pre-processing techniques were applied to the images, to incorporate the phantoms in GATE simulations. The resolution of the phantoms was set to 2 mm3. The most important organ densities were simulated according to the GATE “Materials Database”. Several used radiopharmaceuticals in SPECT and PET applications are being tested, following the EANM pediatric dosage protocol. The biodistributions of the several isotopes used as activity maps in the simulations, were derived by the literature. Results: Initial results of absorbed dose per organ (mGy) are presented in a 5 years old girl from the whole body exposure to 99mTc - SestaMIBI, 30 minutes after administration. Heart, kidney, liver, ovary, pancreas and brain are the most critical organs, in which the S-factors are calculated. The statistical uncertainty in the simulation procedure was kept lower than 5%. The Sfactors for each target organ are calculated in Gy/(MBq*sec) with highest dose being absorbed in kidneys and pancreas (9.29*10{sup 10} and 0.15*10{sup 10} respectively). Conclusion: An approach for the accurate dosimetry on pediatric models is presented, creating a reference dosage dataset for several radionuclides in children computational models with the advantages of MC techniques. Our study is ongoing, extending our investigation to other reference models and evaluating the results with clinical estimated doses.

60 APPLIED LIFE SCIENCES↗

Z-Pinning approach for 3D printing mechanically isotropic materials

Conventional 3D printing approaches are restricted to building up material in a layer-by-layer format, which is more appropriately considered “2.5-D” printing. The layered structure inherently results in significant mechanical anisotropy in printed parts, causing the tensile strength in the build direction (z-axis) to be only a fraction of the in-plane strength – a decrease of 50–75% is common. In this study, a novel “z-pinning” approach is described that allows continuous material to be deposited across multiple layers within the volume of the part. Here, the z-pinning process is demonstrated using a Fused Filament Fabrication (FFF) printer for polylactic acid (PLA) and carbon fiber reinforced PLA. For both materials, z-pinning increased the tensile strength and toughness in the z-direction by more than a factor of 3.5. Direct comparisons to tensile strength in the x-axis showed a significant decrease in mechanical anisotropy as the volume of the pin was increased relative to the void in the rectilinear grid structure. In fact, the PLA sample with the largest pin volume demonstrated mechanically isotropic properties within the statistical uncertainty of the tests. Tensile test results were also analyzed relative to the functional area resisting deformation for each sample.

36 MATERIALS SCIENCE↗

A Dimensionally Aligned Signal Projection for Classification of Unintended Radiated Emissions

Characterization of unintended radiated emissions (URE) from electronic devices plays an important role in many research areas from electromagnetic interference to nonintrusive load monitoring to information system security. URE can provide insights for applications ranging from load disaggregation and energy efficiency to condition-based maintenance of equipment-based upon detected fault conditions. URE characterization often requires subject matter expertise to tailor transforms and feature extractors for the specific electrical devices of interest. We present a novel approach, named dimensionally aligned signal projection (DASP), for projecting aligned signal characteristics that are inherent to the physical implementation of many commercial electronic devices. These projections minimize the need for an intimate understanding of the underlying physical circuitry and significantly reduce the number of features required for signal classification. We present three possible DASP algorithms that leverage frequency harmonics, modulation alignments, and frequency peak spacings, along with a two-dimensional image manipulation method for statistical feature extraction. To demonstrate the ability of DASP to generate relevant features from URE, we measured the conducted URE from 14 residential electronic devices using a 2 MS/s collection system. Furthermore, a linear discriminant analysis classifier was trained using DASP generated features and was blind tested resulting in a greater than 90% classification accuracy for each of the DASP algorithms and an accuracy of 99.1% when DASP features are used in combination. Furthermore, we show that a rank reduced feature set of the combined DASP algorithms provides a 98.9% classification accuracy with only three features and outperforms a set of spectral features in terms of general classification as well as applicability across a broad number of devices.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Method of Determining the Reliability of Real-Time In-reactor Monitoring of VVER

A methodological approach and the basic tenets for evaluating the reliability of in-reactor monitoring of VVER are presented. The method is based on the statistical analysis of indications in real time and includes methods for evaluating the admissible maximum error of the measurement channels used for monitoring as well as the average value and admissible deviation of indications in groups of parallel monitoring channels, as well as a method of evaluating reliability by comparing the values of a parameter with the regime values. In comparing the indications of a monitoring channel with the indications of other parallel channels, the median value is proposed as the baseline value. The developed method is implemented in the Diagnostika SVRK special software, which has been successfully tested during the commissioning of the No. 1 unit at the Novovoronezh NPP-2.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Estimation of Tropical Cyclone Intensity in the North Atlantic and Northeastern Pacific Basins Using TRMM Satellite Passive Microwave Observations

Here, a statistical passive microwave intensity estimation (PMW-IE) algorithm for estimating the intensity of tropical cyclones (TCs) in the North Atlantic and northeastern and central Pacific basins is developed and tested. The algorithm is derived from Tropical Rainfall Measuring Mission (TRMM) Microwave Imager (TMI) 85-GHz brightness temperatures and near-surface rain-rate retrievals to provide objective estimates of current maximum sustained surface winds (Vmax) and 6-h future Vmax of TCs. The full record of TRMM data (1998–2013) including 2326 TMI overpasses of 503 TCs is separated into dependent samples (1998–2010) for model development and independent samples (2011–13) for model verification. The best track intensities are used as dependent variables in a stepwise multiple-regression approach. Separately for each basin, three regression models are derived using selected 1) 85-GHz-only variables, 2) rain-rate-only variables, and 3) combined 85-GHz and rain variables. The algorithms are assessed using independent samples and those with contemporaneous aircraft-reconnaissance measurements. Rain-only and combined models perform better than the 85-GHz-only model. Lower errors are found for estimating the 6-h future Vmax than estimating the current Vmax using all three models. This implies that it is optimal to use passive-microwave-retrieved rain variables observed a few hours earlier to estimate TC intensity. The MAE (RMSE) of 6-h future Vmax is 9 (12) kt (1 kt ≈ 0.51 m s -1 ) when testing the combined models with ATL and EPA independent samples. Aircraft-reconnaissance-based independent samples yields a MAE of 9.6 kt and RMSE of 12.6 kt for estimating 6-h future Vmax.

58 GEOSCIENCES↗

The relationship between stress, anxiety and eating behavior among Chinese students: a cross-sectional study

Background The expansion of higher education and the growing number of college students have led to increased awareness of mental health issues such as stress, anxiety, and eating disorders. In China, the educational system and cultural expectations contribute to the stress experienced by college students. This study aims to clarify the role of anxiety as a mediator in the relationship between stress and eating behaviors among Chinese college students. Methods This study utilized data from the 2021 Psychology and Behavior Investigation of Chinese Residents, which included 1,672 college students under the age of 25. The analysis methods comprised descriptive statistics, t -tests, Pearson correlation analyses, and mediation effect analysis. Results The findings indicate that Chinese college students experience high levels of stress, with long-term stress slightly exceeding short-term stress. Both types of stress were positively correlated with increased anxiety and the adoption of unhealthy eating behaviors. Anxiety was identified as a significant mediator, accounting for 28.3% of the relationship between long-term stress and eating behavior (95% CI = 0.058–0.183). The mediation effect of short-term stress on eating behavior through anxiety was also significant, explaining 61.4% of the total effect (95% CI = 0.185–0.327). Conclusion The study underscores the importance of stress management and mental health services for college students. It recommends a comprehensive approach to reducing external pressures, managing anxiety, and promoting healthy eating behaviors among college students. Suggestions include expanding employment opportunities, providing career guidance, enhancing campus and societal support for holistic development, strengthening mental health services, leveraging artificial intelligence technologies, educating on healthy lifestyles, and implementing targeted health promotion programs.

Chai, Yulin↗

A Ricin Forensic Profiling Approach Based on a Complex Set of Biomarkers

A forensic method for the retrospective determination of preparation methods used for illicit ricin toxin production was developed. The method was based on a complex set of biomarkers, including carbohydrates, fatty acids, seed storage proteins, in combination with data on ricin and Ricinus communis agglutinin. The analyses were performed on samples prepared from four castor bean plant ( Ricinus communis ) cultivars by four different sample preparation methods (PM1 – PM4) ranging from simple disintegration of the castor beans to multi-step preparation methods including different protein precipitation methods. Comprehensive analytical data was collected by use of a range of analytical methods and robust orthogonal partial least squares-discriminant analysis- models (OPLS-DA) were constructed based on the calibration set. By the use of a decision tree and two OPLS-DA models, the sample preparation methods of a test set of ricin preparations were determined. The model statistics of the two models were good and a 100% rate of correct predictions of the test set was achieved.

Fredriksson, Sten-Åke (ORCID:0000000237131990)↗

Hybrid feature selection approach for power transformer fault diagnosis based on support vector machine and genetic algorithm

To further improve fault diagnosis accuracy, a new hybrid feature selection approach combined with a genetic algorithm (GA) and support vector machine (SVM) is presented in this study. Adaptive synthetic technique and arctangent transformation method are adopted to improve the statistical property of the training set (IEC TC10 dataset). Five filter methods based on different evaluation metrics are employed to rank 48 input features derived from dissolved gas analysis (DGA). Then, feature combination methods are applied to aggregate feature ranks and form a lower-dimension candidate feature subset. The GA-SVM model is implemented to optimise parameters and select optimal feature subsets. 5-fold cross-validation accuracy of the GA-SVM is used to evaluate fault diagnosis capability of feature subsets and finally, a novel subset is determined as the optimal feature subset. Accuracy comparison manifests the superiority of the optimal feature subsets over that of conventional approaches. Besides, generalisation and robustness of the optimal subset are validated by testing DGA samples from the local power utility. Results indicate that the optimal feature subset obtained by the proposed method can significantly improve the accuracies of power transformer fault diagnosis.

Kari, Tusongjiang↗

A method of surface marker location optimization for tumor motion estimation in lung stereotactic body radiation therapy

Purpose: Accurately localizing lung tumor localization is essential for high-precision radiation therapy techniques such as stereotactic body radiation therapy (SBRT). Since direct monitoring of tumor motion is not always achievable due to the limitation of imaging modalities for treatment guidance, placement of fiducial markers on the patient’s body surface to act as a surrogate for tumor position prediction is a practical alternative for tracking lung tumor motion during SBRT treatments. In this work, the authors propose an innovative and robust model to solve the multimarker position optimization problem. The model is able to overcome the major drawbacks of the sparse optimization approach (SOA) model. Methods: The principle-component-analysis (PCA) method was employed as the framework to build the authors’ statistical prediction model. The method can be divided into two stages. The first stage is to build the surrogate tumor matrix and calculate its eigenvalues and associated eigenvectors. The second stage is to determine the “best represented” columns of the eigenvector matrix obtained from stage one and subsequently acquire the optimal marker positions as well as numbers. Using 4-dimensional CT (4DCT) and breath hold CT imaging data, the PCA method was compared to the SOA method with respect to calculation time, average prediction accuracy, prediction stability, noise resistance, marker position consistency, and marker distribution. Results: The PCA and SOA methods which were both tested were on all 11 patients for a total of 130 cases including 4DCT and breath-hold CT scenarios. The maximum calculation time for the PCA method was less than 1 s with 64 752 surface points, whereas the average calculation time for the SOA method was over 12 min with 400 surface points. Overall, the tumor center position prediction errors were comparable between the two methods, and all were less than 1.5 mm. However, for the extreme scenarios (breath hold), the prediction errors for the PCA method were not only smaller, but were also more stable than for the SOA method. Results obtained by imposing a series of random noises to the surrogates indicated that the PCA method was much more noise resistant than the SOA method. The marker position consistency tests using various combinations of 4DCT phases to construct the surrogates suggested that the marker position predictions of the PCA method were more consistent than those of the SOA method, in spite of surrogate construction. Marker distribution tests indicated that greater than 80% of the calculated marker positions fell into the high cross correlation and high motion magnitude regions for both of the algorithms. Conclusions: The PCA model is an accurate, efficient, robust, and practical model for solving the multimarker position optimization problem to predict lung tumor motion during SBRT treatments. Due to its generality, PCA model can also be applied to other imaging guidance system whichever using surface motion as the surrogates.

60 APPLIED LIFE SCIENCES↗

Study of η(1405)/η(1475) in $J/\psi \to \gamma {K}_S^0{K}_S^0{\pi}^0$ decay

Using a sample of (10 . 09 ± 0 . 04) × 10 9 J/ψ decays collected with the BESIII detector, partial wave analyses of the decay $ J/\psi \to \gamma {K}_S^0{K}_S^0{\pi}^0$ are performed within the ${K}_S^0{K}_S^0{\pi}^0$ invariant mass region below 1.6 GeV/ c 2 . The covariant tensor amplitude method is used in both mass independent and mass dependent approaches. Both analysis approaches exhibit dominant pseudoscalar and axial vector components, and show good consistency for the other individual components. Furthermore, the mass dependent analysis reveals that the ${K}_S^0{K}_S^0{\pi}^0$ invariant mass spectrum for the pseudoscalar component can be well described with two isoscalar resonant states using relativistic Breit-Wigner model, i.e., the η (1405) with a mass of $1391.7\pm {0.7}_{-0.3}^{+11.3}$ MeV/ c 2 and a width of $60.8\pm {1.2}_{-12.0}^{+5.5}$ MeV, and the η (1475) with a mass of $1507.6\pm {1.6}_{-32.2}^{+15.5}$ MeV/ c 2 and a width of $115.8\pm {2.4}_{-10.9}^{+14.8}$ MeV. The first and second uncertainties are statistical and systematic, respectively. Alternate models for the pseudoscalar component are also tested, but the description of the ${K}_S^0{K}_S^0{\pi}^0$ invariant mass spectrum deteriorates significantly.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Prospects and Limitations of Predicting Fuel Ignition Properties from Low-Temperature Speciation Data

Using chemical kinetic modeling and statistical analysis, we investigate the possibility of correlating key chemical “markers”–typically small molecules–formed during very lean (φ ~ 0.001) oxidation experiments with near-stoichiometric (φ ~ 1) fuel ignition properties. One goal of this work is to evaluate the feasibility of designing a fuel-screening platform, based on small laboratory reactors that operate at low temperatures and use minimal fuel volume. Buras et al. [Combust. Flame2020,216, 472–484] have shown that convolutional neural net (CNN) fitting can be used to correlate first-stage ignition delay times (IDTs) with OH/HO2 measurements during very lean oxidation in low-T flow reactors with better than factor-of-2 accuracy. In this work, we test the limits of applying this correlation-based approach to predict the low-temperature heat release (LTHR) and total IDT, including the sensitivity of total IDT to the equivalence ratio, φ. We demonstrate that first-stage IDT can be reliably correlated with very lean oxidation measurements using compressed sensing (CS), which is simpler to implement than CNN fitting. LTHR can also be predicted via CS analysis, although the correlation quality is somewhat lower than for first-stage IDT. In contrast, the accuracy of total IDT prediction at φ = 1 is significantly lower (within a factor of 4 or worse). Furthermore, these results can be rationalized by the fact that the first-stage IDT and LTHR are primarily determined by low-temperature chemistry, whereas total IDT depends on low-, intermediate-, and high-temperature chemistry. Oxidation reactions are most important at low temperatures, and therefore, measurements of universal molecular markers of oxidation do not capture the full chemical complexity required to accurately predict the total IDT even at a single equivalence ratio. As a result, we find that φ-sensitivity of ignition delay cannot be predicted at all using solely correlation with lean low-T chemical speciation measurements.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

SU-E-J-04: A Data-Driven, Response-Based, Multi-Criteria Decision Support System for Personalized Lung Radiation Treatment Planning

Purpose: To develop a decision support tool to predict a patient's potential overall survival (OS) and radiation induced toxicity (RIT) based on clinical factors and responses during the course of radiotherapy, and suggest appropriate radiation dose adjustments to improve therapeutic effect. Methods: Important relationships between a patient's basic information and their clinical features before and during the radiation treatment are identified from historical clinical data by using statistical learning and data mining approaches. During each treatment period, a data analysis (DA) module predicts radiotherapy features such as time to local progression (TTLP), time to distant metastases (TTDM), radiation toxicity to different organs, etc., under possible future treatment plans based on patient specifics or responses. An information fusion (IF) module estimates intervals for a patient's OS and the probabilities of RIT from a treatment plan by integrating the outcomes of module DA. A decision making (DM) module calculates “satisfaction” with the predicted radiation outcome based on trade-offs between OS and RIT, and finds the best treatment plan for the next time period via multi-criteria optimization. Results: Using physical and biological data from 130 lung cancer patients as our test bed, we were able to train and implement the 3 modules of our decision support tool. Examples demonstrate how it can help predict a new patient's potential OS and RIT with different radiation dose plans along with how these combinations change with dose, thus presenting a range of satisfaction/utility for use in individualized decision support. Conclusion: Although the decision support tool is currently developed from a small patient sample size, it shows the potential for the improvement of each patient's satisfaction in personalized radiation therapy. The radiation treatment outcome prediction and decision making model needs to be evaluated with more patients and demonstrated for use in radiation treatments for other cancers. P01-CA59827;R01CA142840.

60 APPLIED LIFE SCIENCES↗

DUNE and MINERvA Flux Studies and a Measurement of the Charged-Current Quasielastic Antineutrino Scattering Cross Section with $<E_{\nu}> \sim 6 $ GeV on a CH Target

One of the biggest open questions in physics is the prevalence of matter over anti-matter in the present universe. One of possible answers lies in the violation of charge and parity symmetry in the lepton sector that would favor matter over anti-matter so that the universe becomes dominated by matter over time. Recent results from neutrino experiments like T2K and NOvA have indicated that there is CP violation in the leptonic sector \citep{Abe:2019vii}. However, the precise measurement of CP violation will require an unprecedented level of accuracy in these oscillation experiments. One of the challenges lies with the systematic uncertainties that come with the measurements, which include uncertainties related to the neutrino flux modeling, interaction modeling and detector related systematic uncertainties.\\ The first part of this thesis will go through the challenges related to flux uncertainties. It will discuss the flux uncertainties related to hadron production in the LBN F beamli ne for the DUNE experiment. Hadron production models used in flux simulations vary widely depending on the simulation and choice of physics models used to simulate the hadron production. This thesis will explain the method of using existing hadron production data to constrain these uncertainties, a method which has been used in MINERvA experiment.\\ The second part of the thesis goes through the effect of possible flux mismodeling and MINERvA's approach to address this effect. In doing so, we discovered that the suspected mismodeling could also result from incorrect estimation of the energy scale of the muons. This project not only demonstrated the challenges of flux modeling but also led to a novel approach of using neutrino energy spectra to understand the correlation between detector and neutrino beamline parameters. \\ A high statistics measurement of the anti-neutrino scattering cross section in the charged current quasielastic (CCQE) channel is the final part of the th esis. Th e 2-body interactions in this channel have the advantage of allowing reconstruction of the interaction kinematics from the outgoing muon trajectory which can be measured very well. Double differential cross sections as a function of muon kinematics, one of the deliverables of this analysis, will help future oscillation experiments understand their data. The cross-section as a function of the four-momentum transferred from the leptonic system to the hadronic system ($Q^{2}_{QE}$) can be used to test models used in simulating antineutrino interactions and the nuclear effects that can modify the predicted cross sections. Nuclear effects arise from the complex nuclear environment and both modify the initial scattering and change the fate of the particles produced from in neutrino-nucleus interactions. Study of nuclear effects will help to understand the structure of the atomic nucleus and its impact on neutrino interactions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Seasonal variability of multiple leaf traits captured by leaf spectroscopy at two temperate deciduous forests

Understanding the temporal patterns of leaf traits is critical in determining the seasonality and magnitude of terrestrial carbon, water, and energy fluxes. However, we lack robust and efficient ways to monitor the temporal dynamics of leaf traits. Here we assessed the potential of leaf spectroscopy to predict and monitor leaf traits across their entire life cycle at different forest sites and light environments (sunlit vs. shaded) using a weekly sampled dataset across the entire growing season at two temperate deciduous forests. In addition, the dataset includes field measured leaf-level directional-hemispherical reflectance/transmittance together with seven important leaf traits [total chlorophyll (chlorophyll a and b), carotenoids, mass-based nitrogen concentration (N mass ), mass-based carbon concentration (C mass ), and leaf mass per area (LMA)]. All leaf traits varied significantly throughout the growing season, and displayed trait-specific temporal patterns. We used a Partial Least Square Regression (PLSR) modeling approach to estimate leaf traits from spectra, and found that PLSR was able to capture the variability across time, sites, and light environments of all leaf traits investigated (R 2 = 0.6–0.8 for temporal variability; R 2 = 0.3–0.7 for cross-site variability; R 2 = 0.4–0.8 for variability from light environments). We also tested alternative field sampling designs and found that for most leaf traits, biweekly leaf sampling throughout the growing season enabled accurate characterization of the seasonal patterns. Compared with the estimation of foliar pigments, the performance of N mass , C mass and LMA PLSR models improved more significantly with sampling frequency. Our results demonstrate that leaf spectra-trait relationships vary with time, and thus tracking the seasonality of leaf traits requires statistical models calibrated with data sampled throughout the growing season. In conclusion, our results have broad implications for future research that use vegetation spectra to infer leaf traits at different growing stages.

54 ENVIRONMENTAL SCIENCES↗

Do the most massive black holes at z = 2 grow via major mergers?

The most frequently proposed model for the origin of quasars holds that the high accretion rates seen in luminous active galactic nuclei (AGN) are primarily triggered during major mergers between gas-rich galaxies. While plausible for decades, this model has only begun to be tested with statistical rigor in the past few years. Here, we report on a Hubble Space Telescope study to test this hypothesis for z = 2 quasars with high supermassive black hole masses (M{sub BH}=10{sup 9}--10{sup 10} M{sub ⊙} ), which dominate cosmic black hole growth at this redshift. We compare Wide Field Camera 3 F160W (rest-frame V-band) imaging of 19 point source-subtracted quasar hosts to a matched sample of 84 inactive galaxies, testing whether the quasar hosts have greater evidence for strong gravitational interactions. Using an expert ranking procedure, we find that the quasar hosts are uniformly distributed within the merger sequence of inactive galaxies, with no preference for quasars in high-distortion hosts. Using a merger/non-merger cutoff approach, we recover distortion fractions of f{sub m,qso}=0.39±0.11 for quasar hosts and f{sub m,gal}=0.30±0.05 for inactive galaxies (distribution modes, 68% confidence intervals), with both measurements subjected to the same observational conditions and limitations. The slight enhancement in distorted fraction for quasar hosts over inactive galaxies is not significant, with a probability that the quasar fraction is higher P(f{sub m,qso}>f{sub m,gal})=0.78 (0.78σ), in line with results for lower mass and lower z AGN. We find no evidence that major mergers are the primary triggering mechanism for the massive quasars that dominate accretion at the peak of cosmic quasar activity.

79 ASTRONOMY AND ASTROPHYSICS↗

Consistent and reproducible computation of the glass transition temperature from molecular dynamics simulations

In many fields, from semiconductors for opto-electronic applications to ionic liquids (ILs) for separations, the glass transition temperature (Tg) of a material is a useful gauge for its potential use in practical settings. As a result, there is a great deal of interest in predicting Tg using molecular simulations. However, the uncertainty and variation in the trend shift method, a common approach in simulations to predict Tg, can be high. This is due to the need for human intervention in defining a fitting range for linear fits of density with temperature assumed for the liquid and glass phases across the simulated cooling. The definition of such fitting ranges then defines the estimate for the Tg as the intersection of linear fits. We eliminate this need for human intervention by leveraging the Shapiro–Wilk normality test and proposing an algorithm to define the fitting ranges and, consequently, Tg. Through this integration, we incorporate into our automated methodology that residuals must be normally distributed around zero for any fit, a requirement that must be met for any regression problem. Consequently, fitting ranges for realizing linear fits for each phase are statistically defined rather than visually inferred, obtaining an estimate for Tg without any human intervention. The method is also capable of finding multiple linear regimes across density vs temperature curves. We compare the predictions of our proposed method across multiple IL and semiconductor molecular dynamics simulation results from the literature and compare other proposed methods for automatically detecting Tg from density–temperature data. We believe that our proposed method would allow for more consistent predictions of Tg. We make this methodology available and open source through GitHub.

Chemistry↗