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At least 541 records · Page 30

Raexplore: Enabling Rapid, Automated Architecture Exploration for Full Applications

We present Raexplore, a performance modeling framework for architecture exploration. Raexplore enables rapid, automated, and systematic search of architecture design space by combining hardware counter-based performance characterization and analytical performance modeling. We demonstrate Raexplore for two recent manycore processors IBM Blue- Gene/Q compute chip and Intel Xeon Phi, targeting a set of scientific applications. Our framework is able to capture complex interactions between architectural components including instruction pipeline, cache, and memory, and to achieve a 3–22% error for same-architecture and cross-architecture performance predictions. Furthermore, we apply our framework to assess the two processors, and discover and evaluate a list of architectural scaling options for future processor designs.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

Load Balancing Scientific Applications

The largest supercomputers have millions of independent processors, and concurrency levels are rapidly increasing. For ideal efficiency, developers of the simulations that run on these machines must ensure that computational work is evenly balanced among processors. Assigning work evenly is challenging because many large modern parallel codes simulate behavior of physical systems that evolve over time, and their workloads change over time. Furthermore, the cost of imbalanced load increases with scale because most large-scale scientific simulations today use a Single Program Multiple Data (SPMD) parallel programming model, and an increasing number of processors will wait for the slowest one at the synchronization points. To address load imbalance, many large-scale parallel applications use dynamic load balance algorithms to redistribute work evenly. The research objective of this dissertation is to develop methods to decide when and how to load balance the application, and to balance it effectively and affordably. We measure and evaluate the computational load of the application, and develop strategies to decide when and how to correct the imbalance. Depending on the simulation, a fast, local load balance algorithm may be suitable, or a more sophisticated and expensive algorithm may be required. We developed a model for comparison of load balance algorithms for a specific state of the simulation that enables the selection of a balancing algorithm that will minimize overall runtime.

97 MATHEMATICS AND COMPUTING↗

A Pervasive Parallel Processing Framework for Data Visualization and Analysis at Extreme Scale

Most of today’s visualization libraries and applications are based off of what is known today as the visualization pipeline. In the visualization pipeline model, algorithms are encapsulated as “filtering” components with inputs and outputs. These components can be combined by connecting the outputs of one filter to the inputs of another filter. The visualization pipeline model is popular because it provides a convenient abstraction that allows users to combine algorithms in powerful ways. Unfortunately, the visualization pipeline cannot run effectively on exascale computers. Experts agree that the exascale machine will comprise processors that contain many cores. Furthermore, physical limitations will prevent data movement in and out of the chip (that is, between main memory and the processing cores) from keeping pace with improvements in overall compute performance. To use these processors to their fullest capability, it is essential to carefully consider memory access. This is where the visualization pipeline fails. Each filtering component in the visualization library is expected to take a data set in its entirety, perform some computation across all of the elements, and output the complete results. The process of iterating over all elements must be repeated in each filter, which is one of the worst possible ways to traverse memory when trying to maximize the number of executions per memory access. This project investigates a new type of visualization framework that exhibits a pervasive parallelism necessary to run on exascale machines. Our framework achieves this by defining algorithms in terms of functors, which are localized, stateless operations. Functors can be composited in much the same way as filters in the visualization pipeline. But, functors’ design allows them to be concurrently running on massive amounts of lightweight threads. Only with such fine-grained parallelism can we hope to fill the billions of threads we expect will be necessary for efficient computation on an exascale computer. This project concludes with a functional prototype containing pervasively parallel algorithms that perform demonstratively well on many-core processors. These algorithms are fundamental for performing data analysis and visualization at extreme scale.

97 MATHEMATICS AND COMPUTING↗

Trinity Benchmarks on the Intel Xeon Phi (Knights Corner)

This report documents the early experiences with porting and performance analysis of the Tri-Lab Trinity benchmark applications on Intel Xeon Phi (Knights Corner) (KNC) processor. KNC, the second generation of the Intel Many Integrated Core (MIC) architectures, uses a large number of small P54C-x86 cores with wide vector units and is deployed as PCI bus attached process accelerators. Sandia has experimental test beds of small InifiniBand clusters and workstations to investigate the performance of the MIC architecture. On these experimental test beds the programming models that may be investigated are "offload", "symmetric" and "native". Among these program usage models our primary interest is in the so called "native" mode, because the planned Trinity system to be deployed in 2016 using the next generation MIC processor architecture called Knights Landing would be self-hosted. Trinity / NERSC-8 benchmark programs cover a variety of scientific disciplines and they were used to guide the procurement of these systems. Architectures such as the Intel MIC are well suited to study evolving processor architectures and a usage model commonly referred to as MPI + X that facilitates migration of our applications to use both coarse grain and fine grain parallelism. Our focus with the applications selected is on the efficacy of algorithms in these applications to take advantage of features like: large number of cores, wide vector units, higher-bandwidth and deeper memory sub-system. This is a first step towards understanding applications, algorithms and programming environments for Trinity and future exascale computing systems.

97 MATHEMATICS AND COMPUTING↗

Model-Based Localizatiion in a Shallow Ocean Environment: A Sequential Bayesian/Optimization Approach

The shallow ocean is a dynamically changing medium leading to nonstationary statistical behavior when subjected to temperature, wind, surface variations, bottom interactions, noise and extraneous disturbances as well as other conditions that render it a uniquely challenging environment — especially from a signal processing perspective. Processors must account for and adapt to such instantaneous changes in order to be effective. Thus, a processor is required to “adapt” to these environmental variations while simultaneously providing meaningful estimates that are necessary for such applications as detection, localization, inversion and enhancement. In this paper, we develop a parametrically adaptive, sequential Bayesian processor capable of jointly estimating both modal functions and environmental parameters to provide enhanced estimates for a focused optimizer capable locating a target in the noisy shallow ocean environment.

42 ENGINEERING↗

Diagnosing and Destroying Non-Markovian Noise

Nearly every protocol used to analyze the performance of quantum information processors is based on an assumption that the errors experienced by the device during logical operations are constant in time and are insensitive to external contexts. This assumption is pervasive, rarely stated, and almost always wrong. Quantum devices that do behave this way are termed "Markovian:' but nearly every system we have ever probed has displayed drift or crosstalk or memory effects they are all non-Markovian. Strong non-Markovianity introduces spurious effects in characterization protocols and violates assumptions of the fault-tolerance threshold theorems. This SAND report details a three year laboratory-directed research and development (LDRD) project entitled, "Diagnosing and Destroying non-Markovian Noise in Quantum Information Processors." This program was initiated to build tools to study non-Markovian dynamics and quantum systems and develop robust methodologies for eliminating it. The program achieved a number of notable successes, including the first statistically rigorous protocol for identifying and characterizing drift in quantum systems, a formalism for modeling memory effects in quantum devices, and the successful suppression of drift in a Sandia trapped-ion quantum processor.

97 MATHEMATICS AND COMPUTING↗

Parallel Time Integration for Constrained Optimization

The number of transistors in an average processor continues to increase, but individual clock speeds have plateaued. Those transistors are instead going into additional cores, increasing the number of different things that a processor can do at once and placing an emphasis on parallel computation. Many problems in scientific computing follow a time-evolution model, and it can be difficult to solve such problems in parallel across the temporal domain. The Multi-Grid Reduction In Time (MGRIT) algorithm, developed at Lawrence Livermore National Laboratory (LLNL), solves differential equations with a method designed specifically to take advantage of extreme numbers of processors by parallelizing across time. The Tri-diagonal MGRIT (TriMGRIT) algorithm, also developed at LLNL, is a generalization of MGRIT which enables parallel-in-time solving of a greater number of problems. Constrained optimization problems, in particular, may be solved in parallel using TriMGRIT. These consist of choosing a control function such that an objective functional is minimized, constrained by a differential-equation. We consider two such problems: applying torque to a pendulum to bring it to a gentle stop and moving a crowd of people from one distribution into another. We also perform some miscellaneous theoretical and practical research, including investigating the use of a line-search subroutine to refine intermediate TriMGRIT results and preliminary work on strategies for choosing operators for TriMGRIT to use.

97 MATHEMATICS AND COMPUTING↗

COLLABORATIVE DEVELOPMENT PROJECTS - PHOTONIC MEMORY CONTROLLER MODULE (P-MCM)

As computational density for high-performance computing and big-data services continues to scale, performance scalability of next generation computing systems is becoming increasingly constrained by limitations in memory access, power dissipation and chip packaging. The processor-memory communication bottleneck, a major challenge in current multicore processors due to limited pin-out and power budget, presents a detrimental scaling barrier to data-intensive computing. A consortium team of small businesses and leading researchers that includes experts from photonics processor-memory architecture, III/V photonic laser design/fabrication, silicon photonics design/fabrication, photonics packaging and assembly, and FPGA-based high-performance memory controller IP development – to collaboratively develop a commercialization path for a Photonic Memory Controller Module (P-MCM).

97 MATHEMATICS AND COMPUTING↗

Assessment of Multi-Scale Thermal-Hydraulic Codes and Models for DNB Challenge Problem Applications

The objectives of this milestone work are to assess the improved capabilities of the multi-scale thermal-hydraulic (T/H) codes and models developed by the Consortium for Advanced Simulation of Light Water Reactors (CASL) for Departure from Nucleate Boiling (DNB) Challenge Problem (CP), in accordance with the DNB CP implementation plan. The multi-scale models can range from fine mesh Computational Fluid Dynamics (CFD) simulation of flow field surrounding a fuel rod to a full core modeling of a Pressurized Water Reactor (PWR). The assessments are performed based on the CASL subchannel code COBRA-TF (CTF) and the CFD code Hydra-TH. Significant improvements have been achieved on the CASL multi-scale T/H code and modeling capabilities based on the CTF subchannel code and the Hydra-TH CFD code in the past year for DNB CP applications. The improvements are reflected in the new transient modeling for the Reactivity Insertion Accident (RIA) DNB predictions and full assembly modeling using the CTF code and its processor, as well as the rod bundle modeling for single-phase flow and heat transfer simulations using the Hydra-TH code, the pre-processor for mesh generation and the post-processor for data visualization.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

An Integrated Framework for Memory-Centric Analysis: From Trace Collection to Co-Design

The memory wall phenomenon—where advances in processor performance significantly outpace those in memory subsystems—poses a fundamental challenge for contemporary computing systems. In memory-bound applications, memory subsystem behavior dominates performance, yet existing analysis approaches present significant limitations: detailed microarchitectural simulators require days to weeks to simulate modest workloads; hardware performance counters provide only aggregate statistics that obscure temporal and spatial access patterns; and scaled simulation approaches face challenges in capturing certain behaviors that emerge at larger scales. These limitations reflect a processor-centric design philosophy increasingly misaligned with memory-bound workloads where detailed understanding of memory access patterns, cache hierarchy interactions, and contention is critical for effective optimization. This paper presents an integrated framework for memory-centric analysis that enables effective hardware-software co-design. We describe practical trace collection techniques, including hardware-assisted processor tracing with minimal overhead and portable software-based instrumentation with statistical sampling. We present multi-perspective analysis methods that examine memory behavior from temporal, sequential, spatial, and relational viewpoints, revealing distinct optimization opportunities invisible in aggregate metrics. We detail an architectural modeling framework that uses sampled traces with temporal interpolation and confidence-based filtering to evaluate cache and memory configurations. Evaluation on representative benchmarks demonstrates that this framework achieves practical accuracy (L2 cache errors of 2.64\%, confidence-filtered L3 errors of 9.92\%, bandwidth errors of 7.33\%) while providing substantial speedup (26.8×) over cycle-accurate simulation, enabling rapid design space exploration. We demonstrate how this integrated framework enables systematic identification of both hardware optimizations (memory controller tuning, bank partitioning, NUMA configuration) and software optimizations (data layout restructuring, prefetching strategies, memory-aware scheduling). Through this comprehensive treatment of the memory-centric analysis pipeline—from trace collection through architectural modeling to co-design application—we provide researchers and practitioners with practical techniques for addressing memory bottlenecks in contemporary computing systems.

Gajaria, Dhruv Mayur↗

Recall Performance for Content-Addressable Memory Using Adiabatic Quantum Optimization

A content-addressable memory (CAM) stores key-value associations such that the key is recalled by providing its associated value. While CAM recall is traditionally performed using recurrent neural network models, we show how to solve this problem using adiabatic quantum optimization. Our approach maps the recurrent neural network to a commercially available quantum processing unit by taking advantage of the common underlying Ising spin model. We then assess the accuracy of the quantum processor to store key-value associations by quantifying recall performance against an ensemble of problem sets. We observe that different learning rules from the neural network community influence recall accuracy but performance appears to be limited by potential noise in the processor. The strong connection established between quantum processors and neural network problems supports the growing intersection of these two ideas.

97 MATHEMATICS AND COMPUTING↗

PATCHWORK: A Multipatch Infrastructure for Multiphysics/Multiscale/Multiframe Fluid Simulations

Here, we present a "multipatch" infrastructure for the numerical simulation of fluid problems in which subregions require different grid scales, different grid geometries, different physical equations, or different reference frames. Its key element is a sophisticated client–router–server framework for efficiently linking processors supporting different regions ("patches") that must exchange boundary data. This infrastructure may be used with a wide variety of fluid dynamics codes; the only requirement is that their primary dependent variables be the same in all patches, e.g., fluid mass density, internal energy density, and velocity. Its structure can accommodate either Newtonian or relativistic dynamics. The overhead imposed by this system is both problem and computer cluster architecture dependent. Compared to a conventional simulation using the same number of cells and processors employed on a problem not requiring multipatch methods, the cell update per processor rate decreases by an amount that can range from negligible to a factor of a few; however, even in these problems, the infrastructure can permit substantial decreases in the total number of cell updates required.

97 MATHEMATICS AND COMPUTING↗

An Approach to Enhance pnetCDF Performance in Environmental Modeling Applications

I/O has been considered as a bottleneck in parallel applications. The software package, pnetCDF which works with parallel file systems, was developed to address this issue and provide parallel I/O capability. This study examines the performance of a novel approach which performs data aggregation along either row or column dimension of the spatial domain, and then applies the pnetCDF parallel I/O paradigm. The test was done with three different domain sizes which represents small, moderately large and large data domains, using a small scale Community Multi-scale Air Quality model (CMAQ) mocked up code. The examination includes comparing I/O performance with traditional serial I/O technique, straight application of pnetCDF, and the data aggregation along row and column dimension before applying pnetCDF. After the comparison, “optimal” I/O configurations for this new novel approach were quantified. Data aggregation along the row dimension (pnetCDFcr) works better than along the column dimension (pnetCDFcc) although it may perform slightly worse than straight the pnetCDF method with a small number of processors. When the number of processors becomes larger, pnetCDFcr out performs pnetCDF significantly. If the number of processors keeps increasing, pnetCDF reaches a point that the performance is even worse than the serial I/O technique. This new approach has also been tested on a real application where it performs two times better than the straight pnetCDF paradigm.

I/O↗

Managing coherence via put/get windows

A method and apparatus for managing coherence between two processors of a two processor node of a multi-processor computer system. Generally the present invention relates to a software algorithm that simplifies and significantly speeds the management of cache coherence in a message passing parallel computer, and to hardware apparatus that assists this cache coherence algorithm. The software algorithm uses the opening and closing of put/get windows to coordinate the activated required to achieve cache coherence. The hardware apparatus may be an extension to the hardware address decode, that creates, in the physical memory address space of the node, an area of virtual memory that (a) does not actually exist, and (b) is therefore able to respond instantly to read and write requests from the processing elements.

97 MATHEMATICS AND COMPUTING↗

Simplifying and speeding the management of intra-node cache coherence

A method and apparatus for managing coherence between two processors of a two processor node of a multi-processor computer system. Generally the present invention relates to a software algorithm that simplifies and significantly speeds the management of cache coherence in a message passing parallel computer, and to hardware apparatus that assists this cache coherence algorithm. The software algorithm uses the opening and closing of put/get windows to coordinate the activated required to achieve cache coherence. The hardware apparatus may be an extension to the hardware address decode, that creates, in the physical memory address space of the node, an area of virtual memory that (a) does not actually exist, and (b) is therefore able to respond instantly to read and write requests from the processing elements.

97 MATHEMATICS AND COMPUTING↗

Method and apparatus of parallel computing with simultaneously operating stream prefetching and list prefetching engines

A prefetch system improves a performance of a parallel computing system. The parallel computing system includes a plurality of computing nodes. A computing node includes at least one processor and at least one memory device. The prefetch system includes at least one stream prefetch engine and at least one list prefetch engine. The prefetch system operates those engines simultaneously. After the at least one processor issues a command, the prefetch system passes the command to a stream prefetch engine and a list prefetch engine. The prefetch system operates the stream prefetch engine and the list prefetch engine to prefetch data to be needed in subsequent clock cycles in the processor in response to the passed command.

97 MATHEMATICS AND COMPUTING↗

Radio-nuclide mixture identification using medium energy resolution detectors

According to one embodiment, a method for identifying radio-nuclides includes receiving spectral data, extracting a feature set from the spectral data comparable to a plurality of templates in a template library, and using a branch and bound method to determine a probable template match based on the feature set and templates in the template library. In another embodiment, a device for identifying unknown radio-nuclides includes a processor, a multi-channel analyzer, and a memory operatively coupled to the processor, the memory having computer readable code stored thereon. The computer readable code is configured, when executed by the processor, to receive spectral data, to extract a feature set from the spectral data comparable to a plurality of templates in a template library, and to use a branch and bound method to determine a probable template match based on the feature set and templates in the template library.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Method and system to estimate variables in an integrated gasification combined cycle (IGCC) plant

System and method to estimate variables in an integrated gasification combined cycle (IGCC) plant are provided. The system includes a sensor suite to measure respective plant input and output variables. An extended Kalman filter (EKF) receives sensed plant input variables and includes a dynamic model to generate a plurality of plant state estimates and a covariance matrix for the state estimates. A preemptive-constraining processor is configured to preemptively constrain the state estimates and covariance matrix to be free of constraint violations. A measurement-correction processor may be configured to correct constrained state estimates and a constrained covariance matrix based on processing of sensed plant output variables. The measurement-correction processor is coupled to update the dynamic model with corrected state estimates and a corrected covariance matrix. The updated dynamic model may be configured to estimate values for at least one plant variable not originally sensed by the sensor suite.

47 OTHER INSTRUMENTATION↗