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At least 541 records · Page 30

The Osher scheme for non-equilibrium reacting flows

An extension of the Osher upwind scheme to nonequilibrium reacting flows is presented. Owing to the presence of source terms, the Riemann problem is no longer self-similar and therefore its approximate solution becomes tedious. With simplicity in mind, a linearized approach which avoids an iterative solution is used to define the intermediate states and sonic points. The source terms are treated explicitly. Numerical computations are presented to demonstrate the feasibility, efficiency and accuracy of the proposed method. The test problems include a ZND (Zeldovich-Neumann-Doring) detonation problem for which spurious numerical solutions which propagate at mesh speed have been observed on coarse grids. With the present method, a change of limiter causes the solution to change from the physically correct CJ detonation solution to the spurious weak detonation solution.

Suresh, Ambady↗

Accurate upwind methods for the Euler equations

A new class of piecewise linear methods for the numerical solution of the one-dimensional Euler equations of gas dynamics is presented. These methods are uniformly second-order accurate, and can be considered as extensions of Godunov's scheme. With an appropriate definition of monotonicity preservation for the case of linear convection, it can be shown that they preserve monotonicity. Similar to Van Leer's MUSCL scheme, they consist of two key steps: a reconstruction step followed by an upwind step. For the reconstruction step, a monotonicity constraint that preserves uniform second-order accuracy is introduced. Computational efficiency is enhanced by devising a criterion that detects the 'smooth' part of the data where the constraint is redundant. The concept and coding of the constraint are simplified by the use of the median function. A slope steepening technique, which has no effect at smooth regions and can resolve a contact discontinuity in four cells, is described. As for the upwind step, existing and new methods are applied in a manner slightly different from those in the literature. These methods are derived by approximating the Euler equations via linearization and diagonalization. At a 'smooth' interface, Harten, Lax, and Van Leer's one intermediate state model is employed. A modification for this model that can resolve contact discontinuities is presented. Near a discontinuity, either this modified model or a more accurate one, namely, Roe's flux-difference splitting. is used. The current presentation of Roe's method, via the conceptually simple flux-vector splitting, not only establishes a connection between the two splittings, but also leads to an admissibility correction with no conditional statement, and an efficient approximation to Osher's approximate Riemann solver. These reconstruction and upwind steps result in schemes that are uniformly second-order accurate and economical at smooth regions, and yield high resolution at discontinuities.

Huynh, Hung T.↗

Magnetic Photon Splitting: The S-Matrix Formulation in the Landau Representation

Calculations of reaction rates for the third-order QED process of photon splitting gamma yields gamma.gamma in strong magnetic fields traditionally have employed either the effective Lagrangian method or variants of Schwinger's proper-time technique. Recently, Mentzel, Berg and Wunner [1] presented an alternative derivation via an S-matrix formulation in the Landau representation. Advantages of such a formulation include the ability to compute rates near pair resonances above pair threshold. This paper presents new developments of the Landau representation formalism as applied to photon splitting, providing significant, advances beyond the work of [1] by summing over the spin quantum numbers of the electron propagators, and analytically integrating over the component of momentum of the intermediate states that is parallel to field. The ensuing tractable expressions for the scattering amplitudes are satisfyingly compact, and of an appearance familiar to S-matrix theory applications. Such developments can facilitate numerical computations of splitting considerably both below and above pair threshold. Specializations to two regimes of interest are obtained, namely the limit of highly supercritical fields and the domain where photon energies are far inferior to that for the threshold of single-photon pair creation. In particular, for the first time the low-frequency amplitudes are simply expressed in terms of the Gamma function, its integral and its derivatives. In addition, the equivalence of the asymptotic forms in these two domains to extant results from effective Lagrangian/proper- time formulations is demonstrated.

Baring, Matthew G.↗

The General Equations of Equilibrium of Rotationally Symmetric Membranes and some Static Solutions for Uniform Centrifugal Loading

The general equations of equilibrium of a rotationally symmetrical body undergoing large arbitrary deflections but small strains are derived by means of the principle of virtual work. All deflections are referred to a reference surface which, in general, may be taken to coincide with any intermediate state of the membrane. Static solutions of the general equations for steadily rotating membranes are considered for the cases in which the final or the initial configuration of the membrane is specified. For problems in which the final configuration is specified, conditions are given under which such a configuration is obtainable from a stress-free initial state. Such conditions being satisfied, it is shown that the stresses and radial displacements are determinate while axial displacements may be obtained by quadrature. For problems in which the initial configuration is given, the determination of the stresses and deflections is reduced to the solution of a second-order nonlinear differential equation for a stress function. An approximate method of solution based on boundary-layer considerations is presented for the case of a spinning sphere of constant thickness. Specific examples are given for both classes of problems.

Simmonds, James G.↗

Delta excitations and shell-model information in heavy-ion, charge-exchange reactions

We calculate total cross sections for coherent pion production using localized plane-wave approximations for the shell-structure of valence nucleons that are excited to delta particles in the intermediate state in the (12C, 12B) and (12C, 12N) charge-exchange, heavy-ion reactions. We find comparable agreement to projectile downshift data for 12C(12C, 12B)12N. Then we improve the formalism by replacing the localized plane wave bound states with harmonic oscillator states which are imbedded in a multipole expansion approach and calculate pion differential cross sections to test for the sensitivity of the spectra to the single-particle mass parameter.

NASA Program Space Medicine↗

MARSIS antenna flight deployment anomaly and resolution

This paper summarizes the resolution of an in flight anomaly that occurred during the deployment of the first of three MARSIS antenna booms. Characteristics of this deployment are described, along with a correlation to finite element models and measured spacecraft inertias, which allowed the intermediate state of the boom to be accurately determined. Based on this information, a spacecraft maneuver was performed that warmed the stalled hinge and led to the first boom successfully locking into its designed geometry. The confirmed partially deployed boom shape was then used to develop a thermal model of the stalled hinge both in its initial solar attitude and during the successful spacecraft maneuver. Results from the hinge thermal model and component level testing were evaluated in order to determine the root cause of the anomaly and the probability of its recurrence on subsequent deployments. These conclusions were then utilized in planning mitigating actions that were implemented during the remaining two boom deployments. Final flight data are presented for both dipole booms indicating a correctly deployed and healthy antenna. The monopole boom deployment was detected but the final state of the boom is unknown.

Mars↗

A Globally Optimal Particle Tracking Technique for Stereo Imaging Velocimetry Experiments

An important phase of any Stereo Imaging Velocimetry experiment is particle tracking. Particle tracking seeks to identify and characterize the motion of individual particles entrained in a fluid or air experiment. We analyze a cylindrical chamber filled with water and seeded with density-matched particles. In every four-frame sequence, we identify a particle track by assigning a unique track label for each camera image. The conventional approach to particle tracking is to use an exhaustive tree-search method utilizing greedy algorithms to reduce search times. However, these types of algorithms are not optimal due to a cascade effect of incorrect decisions upon adjacent tracks. We examine the use of a guided evolutionary neural net with simulated annealing to arrive at a globally optimal assignment of tracks. The net is guided both by the minimization of the search space through the use of prior limiting assumptions about valid tracks and by a strategy which seeks to avoid high-energy intermediate states which can trap the net in a local minimum. A stochastic search algorithm is used in place of back-propagation of error to further reduce the chance of being trapped in an energy well. Global optimization is achieved by minimizing an objective function, which includes both track smoothness and particle-image utilization parameters. In this paper we describe our model and present our experimental results. We compare our results with a nonoptimizing, predictive tracker and obtain an average increase in valid track yield of 27 percent

McDowell, Mark↗

Compact, Lightweight Servo-Controllable Brakes

Compact, lightweight servo-controllable brakes capable of high torques are being developed for incorporation into robot joints. A brake of this type is based partly on the capstan effect of tension elements. In a brake of the type under development, a controllable intermediate state of torque is reached through on/off switching at a high frequency.

Lovchik, Christopher S.↗

Disc-jet Coupling in the 2009 Outburst of the Black Hole Candidate H1743-322

We present an intensive radio and X-ray monitoring campaign on the 2009 outburst of the Galactic black hole candidate X-ray binary H1743-322. With the high angular resolution of the Very Long Baseline Array, we resolve the jet ejection event and measure the proper motions of the jet ejecta relative to the position of the compact core jets detected at the beginning of the outburst. This allows us to accurately couple the moment when the jet ejection event occurred with X-ray spectral and timing signatures. We find that X-ray timing signatures are the best diagnostic of the jet ejection event in this outburst, which occurred as the X-ray variability began to decrease and the Type C quasi-periodic oscillations disappeared from the X-ray power density spectrum. However, this sequence of events does not appear to be replicated in all black hole X-ray binary outbursts, even within an individual source. In our observations of H1743-322, the ejection was contemporaneous with a quenching of the radio emission, prior to the start of the major radio flare. This contradicts previous assumptions that the onset of the radio flare marks the moment of ejection. The jet speed appears to vary between outbursts with a positive correlation outburst luminosity. The compact core radio jet reactivated on transition to the hard intermediate state at the end of the outburst and not when the source reached the low hard spectral state. Comparison with the known near-infrared behaviour of the compact jets suggests a gradual evolution of the compact jet power over a few days near beginning the and end of an outburst

Miller-Jones, J. C. A.↗

Superconducting Effects in Optimization of Magnetic Penetration Thermometers for X-ray Microcalorimeters

We have made high resolution x-ray microcalorimeters using superconducting MoAu bilayers and Nb meander coils. The temperature sensor is a Magnetic Penetration Thermometer (MPT). Operation is similar to metallic magnetic calorimeters, but instead of the magnetic susceptibility of a paramagnetic alloy, we use the diamagnetic response of the superconducting MoAu to sense temperature changes in an x-ray absorber. Flux-temperature responsivtty can be large for small sensor heat capacity, with enough dynamic range for applications. We find models of observed flux-temperature curves require several effects to explain flux penetration or expulsion in the microscopic devices. The superconductor is non-local, with large coherence length and weak pinning of flux. At lowest temperatures, behavior is dominated by screening currents that vary as a result of the temperature dependence of the magnetic penetration depth, modified by the effect of the nonuniformity of the applied field occurring on a scale comparable to the coherence length. In the temperature regime where responslvity is greatest, spadal variations in the order parameter become important: both local variations as flux enters/leaves the film and an intermediate state is formed, and globally as changing stability of the electrical circuit creates a Meissner transition and flux is expelled/penetrates to minimize free energy.

Stevenson, Thomas R.↗

A Green's Function Approach to Simulate DNA Damage by the Indirect Effect

The DNA damage is of fundamental importance in the understanding of the effects of ionizing radiation. DNA is damaged by the direct effect of radiation (e.g. direct ionization) and by indirect effect (e.g. damage by.OH radicals created by the radiolysis of water). Despite years of research, many questions on the DNA damage by ionizing radiation remains. In the recent years, the Green's functions of the diffusion equation (GFDE) have been used extensively in biochemistry [1], notably to simulate biochemical networks in time and space [2]. In our future work on DNA damage, we wish to use an approach based on the GFDE to refine existing models on the indirect effect of ionizing radiation on DNA. To do so, we will use the code RITRACKS [3] developed at the NASA Johnson Space Center to simulate the radiation track structure and calculate the position of radiolytic species after irradiation. We have also recently developed an efficient Monte‐Carlo sampling algorithm for the GFDE of reversible reactions with an intermediate state [4], which can be modified and adapted to simulate DNA damage by free radicals. To do so, we will use the known reaction rate constants between radicals (OH, eaq, H,...) and the DNA bases, sugars and phosphates and use the sampling algorithms to simulate the diffusion of free radicals and chemical reactions with DNA. These techniques should help the understanding of the contribution of the indirect effect in the formation of DNA damage and double‐strand breaks.

Plante, Ianik↗

A Radiation Chemistry Code Based on the Green's Function of the Diffusion Equation

Stochastic radiation track structure codes are of great interest for space radiation studies and hadron therapy in medicine. These codes are used for a many purposes, notably for microdosimetry and DNA damage studies. In the last two decades, they were also used with the Independent Reaction Times (IRT) method in the simulation of chemical reactions, to calculate the yield of various radiolytic species produced during the radiolysis of water and in chemical dosimeters. Recently, we have developed a Green's function based code to simulate reversible chemical reactions with an intermediate state, which yielded results in excellent agreement with those obtained by using the IRT method. This code was also used to simulate and the interaction of particles with membrane receptors. We are in the process of including this program for use with the Monte‐Carlo track structure code Relativistic Ion Tracks (RITRACKS). This recent addition should greatly expand the capabilities of RITRACKS, notably to simulate DNA damage by both the direct and indirect effect.

Plante, Ianik↗

Alternative Explanations for Extreme Supersolar Iron Abundances Inferred from the Energy Spectrum of Cygnus X-1

Here we study a 1-200 keV energy spectrum of the black hole binary Cygnus X-1 taken with NuSTAR and Suzaku. This is the first report of a NuSTAR observation of Cyg X-1 in the intermediate state, and the observation was taken during the part of the binary orbit where absorption due to the companion's stellar wind is minimal. The spectrum includes a multi-temperature thermal disk component, a cutoff power-law component, and relativistic and nonrelativistic reflection components. Our initial fits with publicly available constant density reflection models (relxill and reflionx) lead to extremely high iron abundances (greater than 9.96 and 10.6 minus 0.9 (sub) to plus 1.6 (sup) times solar, respectively). Although supersolar iron abundances have been reported previously for Cyg X-1, our measurements are much higher and such variability is almost certainly unphysical. Using a new version of reflionx that we modified to make the electron density a free parameter, we obtain better fits to the spectrum even with solar iron abundances. We report on how the higher density (n (sub e) equal to 3.98 minus 0.25 (sub) to plus 0.12 (sup) times 10 (sup 20) per cubic centimeter) impacts other parameters such as the inner radius and inclination of the disk.

Tomsick, John A.↗

A Comprehensive X-ray Report on AT2019wey

The Galactic low-mass X-ray binary AT2019wey (ATLAS19bcxp, SRGAJ043520.9+552226, SRGEJ043523.3+552234, ZTF19acwrvzk) was discovered as a new optical transient in Dec 2019, and independently as an X-ray transient in Mar 2020. In this paper, we present comprehensive NICER, NuSTAR, Chandra, Swift, and MAXI observations of AT2019wey from ~1 year prior to the discovery to the end of September 2020. AT2019wey appeared as a ~ 1 mCrab source and stayed at this flux density for several months, displaying a hard X-ray spectrum that can be modeled as a power-law with photon index Γ ~ 1.8. In June 2020 it started to brighten and reached ~20 mCrab in ~2 months. The inclination of this system can be constrained to I ≲ 30° by modelling the reflection spectrum. Starting from late-August (~ 59082 MJD), AT2019wey entered into the hard-intermediate state (HIMS), and underwent a few week-long timescale outbursts, where the brightening in soft X-rays is correlated with the enhancement of a thermal component. Low-frequency quasi-periodic oscillation (QPO) was observed in the HIMS. We detect no pulsation and in timing analysis of the NICER and NuSTAR data. The X-ray states and power spectra of AT2019wey are discussed against the landscape of low-mass X-ray binaries.

Individual X-rays↗

Evolution and folding of repeat proteins

Repeat proteins are made with tandem copies of similar amino acid stretches that fold into elongated architectures. These proteins constitute excellent model systems to investigate how evolution relates to structure, folding, and function. Here, we propose a scheme to map evolutionary information at the sequence level to a coarse-grained model for repeat-protein folding and use it to investigate the folding of thousands of repeat proteins. We model the energetics by a combination of an inverse Potts-model scheme with an explicit mechanistic model of duplications and deletions of repeats to calculate the evolutionary parameters of the system at the single-residue level. These parameters are used to inform an Ising-like model that allows for the generation of folding curves, apparent domain emergence, and occupation of intermediate states that are highly compatible with experimental data in specific case studies. We analyzed the folding of thousands of natural Ankyrin repeat proteins and found that a multiplicity of folding mechanisms are possible. Fully cooperative all-or-none transitions are obtained for arrays with enough sequence-similar elements and strong interactions between them, while noncooperative element-by-element intermittent folding arose if the elements are dissimilar and the interactions between them are energetically weak. Additionally, we characterized nucleation-propagation and multidomain folding mechanisms. We show that the global stability and cooperativity of the repeating arrays can be predicted from simple sequence scores.

Ezequiel A. Galpern↗

Structure of a Complex between Nedd8 and the Ulp/Senp Protease Family Member Den1

The Nedd8 conjugation pathway is conserved from yeast to humans and is essential in many organisms. Nedd8 is conjugated to cullin proteins in a process that alters SCF E3 ubiquitin ligase activity, and it is presumed that Nedd8 deconjugation would reverse these effects. We now report the X-ray structures of the human Nedd8-specific protease, Den1, in a complex with the inhibitor Nedd8 aldehyde, thus revealing a model for the tetrahedral transition state intermediate generated during proteolysis. Although Den1 is closely related to the SUMO-specific protease family (Ulp/Senp family), structural analysis of the interface suggests determinants involved in Nedd8 selectivity by Den1 over other ubiquitin-like family members and suggests how the Ulp/Senp architecture has been modified to interact with different ubiquitin-like modifiers.

59 BASIC BIOLOGICAL SCIENCES↗

Spin-Flavor van der Waals Forces and NN interaction

A major goal in Nuclear Physics is the derivation of the Nucleon-Nucleon (NN) interaction from Quantum Chromodynamics (QCD). In QCD the fundamental degrees of freedom are colored quarks and gluons which are confined to form colorless strongly interacting hadrons. Because of this the resulting nuclear forces at sufficiently large distances correspond to spin-flavor excitations, very much like the dipole excitations generating the van der Waals (vdW) forces acting between atoms. We study the Nucleon-Nucleon interaction in the Born-Oppenheimer approximation at second order in perturbation theory including the Delta resonance as an intermediate state. The potential resembles strongly chiral potentials computed either via soliton models or chiral perturbation theory and has a van der Waals like singularity at short distances which is handled by means of renormalization techniques. Results for the deuteron are discussed.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

D_S Dalitz Plot Analysis From the B-Factories

The resonant sub-structure of three-body charm meson decays can be effectively studied with Dalitz plot analyses. By using coherent sums of amplitudes, interference between different intermediate states can be described. Such interference effects can yield information on states, such as the scalar resonances, that is difficult to obtain in other ways. In this summary, we report on BABAR collaboration Dalitz plot analyses of two modes: D{sub s}{sup +} {yields} K{sup +}K{sup -}{pi}{sup +} and D{sub s}{sup +} {yields} {pi}{sup +}{pi}{sup -}{pi}{sup +}.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗