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At least 541 records · Page 30

Mapping Influenza-Induced Posttranslational Modifications on Histones from CD8+ T Cells

T cell function is determined by transcriptional networks that are regulated by epigenetic programming via posttranslational modifications (PTMs) to histone proteins and DNA. Bottom-up mass spectrometry (MS) can identify histone PTMs, whereas intact protein analysis by MS can detect species missed by bottom-up approaches. We used a novel approach of online two-dimensional liquid chromatography-tandem MS with high-resolution reversed-phase liquid chromatography (RPLC), alternating electron transfer dissociation (ETD) and collision-induced dissociation (CID) on precursor ions to maximize fragmentation of uniquely modified species. The first online RPLC separation sorted histone families, then RPLC or weak cation exchange hydrophilic interaction liquid chromatography (WCX-HILIC) separated species heavily clad in PTMs. Tentative identifications were assigned by matching proteoform masses to predicted theoretical masses that were verified with tandem MS. We used this innovative approach for histone-intact protein PTM mapping (HiPTMap) to identify and quantify proteoforms purified from CD8 T cells after in vivo influenza infection. Activation significantly altered PTMs following influenza infection, histone maps changed as T cells migrated to the site of infection, and T cells responding to secondary infections had significantly more transcription enhancing modifications. Thus, HiPTMap identified and quantified proteoforms and determined changes in CD8 T cell histone PTMs over the course of infection.

mass spectrometry↗

Evaporation, ignition and combustion of nondilute clusters of drops

A theory of evaporation, ignition, and burning of moderately dense spherical drop clusters has been developed. The theory takes into account burning of premixed air and fuel internal to the cluster at ignition and subsequent burning of fuel emitted from the cluster by a flame sheet surrounding it. The model considers interdrop interaction, momentum exchange between drops and gas, and turbulent exchange processes between the cluster and its surroundings. Calcualtions are performed for varying initial air to fuel mass ratios, initial cluster radii, ambient gas temperatures, and initial drop temperatures. Results are presented for fuel burn fractions at ignition and at the moment of drop disappearance, as well as jump conditions at ignition.

Bellan, J.↗

Evaporation, ignition, and combustion of nondilute clusters of drops

A theory of evaporation, ignition, and burning of moderately dense spherical drop clusters has been developed. The theory takes into account burning of premixed air and fuel internal to the cluster at ignition and subsequent burning of fuel emitted from the cluster by a flame sheet surrounding it. The model considers interdrop interaction, momentum exchange between drops and gas, and turbulent exchange processes between the cluster and its surroundings. Calculations are performed for varying initial air-to-fuel-mass ratios, initial cluster radii, ambient gas temperatures and initial drop temperatures. Results are presented for ratios of fuel mass burned to fuel mass lost from the cluster between drop ignition and drop disappearance, fuel burned fractions at ignition and at the moment of drop disappearance, and jump conditions at ignition.

Bellan, J.↗

TEJAS

The Telerobotics/EVA Joint Analysis System (TEJAS) is a hypermedia information system that provides a clear, consistent, repeatable, interactive, and exchangeable multilevel mechanism for telerobotics technology development planning, based on a realistic understanding of the following: (1) Task description, assumptions, and open issues; (2) Specific task primitives (derived from generic primitives); (3) Technologies required to perform on-orbit telerobotics; (4) Planned telerobotics systems' use of those technologies; and (5) Forecast for each technology in terms of time and money. TEJAS was created in HyperCard on a Macintosh 2 personal workstation, with HyperTalk scripts providing action and relational capability. Version 1.0, consisting of more than a dozen interrelated files, will be released in Jan. 1990.

Drews, Michael↗

Using Ontologies to Formalize Services Specifications in Multi-Agent Systems

One key issue in multi-agent systems (MAS) is their ability to interact and exchange information autonomously across applications. To secure agent interoperability, designers must rely on a communication protocol that allows software agents to exchange meaningful information. In this paper we propose using ontologies as such communication protocol. Ontologies capture the semantics of the operations and services provided by agents, allowing interoperability and information exchange in a MAS. Ontologies are a formal, machine processable, representation that allows to capture the semantics of a domain and, to derive meaningful information by way of logical inference. In our proposal we use a formal knowledge representation language (OWL) that translates into Description Logics (a subset of first order logic), thus eliminating ambiguities and providing a solid base for machine based inference. The main contribution of this approach is to make the requirements explicit, centralize the specification in a single document (the ontology itself), at the same that it provides a formal, unambiguous representation that can be processed by automated inference machines.

Breitman, Karin Koogan↗

Workshop on Radical Agent Concepts (WRAC)

Agent technology, along with autonomous and autonomic computing, has emerged as a major field in computing, and will greatly influence the future development of complex computer-based systems. The area of research is strongly influenced by the Autonomic Computing initiative as well as by developments in biologically-inspired computing, and involves interdisciplinary interaction from those involved in research in social intelligence, psychology, arts, biology, computer science, computer communications and philosophy. This volume includes revised versions of papers presented at the workshop. The workshop was structured so as to allow adequate time for discussion and interaction, to exchange ideas and reflect on the motivations, scientific grounds and practical consequences of the concepts presented. Many of the ideas are truly "radical", and so authors were given time to revise their papers to reflect further thoughts on the ideas presented, and to reflect feedback received at the workshop.

Hinchey, Michael G.↗

Virtual Satellite

Virtual Satellite (VirtualSat) is a computer program that creates an environment that facilitates the development, verification, and validation of flight software for a single spacecraft or for multiple spacecraft flying in formation. In this environment, enhanced functionality and autonomy of navigation, guidance, and control systems of a spacecraft are provided by a virtual satellite that is, a computational model that simulates the dynamic behavior of the spacecraft. Within this environment, it is possible to execute any associated software, the development of which could benefit from knowledge of, and possible interaction (typically, exchange of data) with, the virtual satellite. Examples of associated software include programs for simulating spacecraft power and thermal- management systems. This environment is independent of the flight hardware that will eventually host the flight software, making it possible to develop the software simultaneously with, or even before, the hardware is delivered. Optionally, by use of interfaces included in VirtualSat, hardware can be used instead of simulated. The flight software, coded in the C or C++ programming language, is compilable and loadable into VirtualSat without any special modifications. Thus, VirtualSat can serve as a relatively inexpensive software test-bed for development test, integration, and post-launch maintenance of spacecraft flight software.

Hammrs, Stephan R.↗

Requirements of an Integrated Formal Method for Intelligent Swarms

NASA is investigating new paradigms for future space exploration, heavily focused on the (still) emerging technologies of autonomous and autonomic systems [47, 48, 49]. Missions that rely on multiple, smaller, collaborating spacecraft, analogous to swarms in nature, are being investigated to supplement and complement traditional missions that rely on one large spacecraft [16]. The small spacecraft in such missions would each be able to operate on their own to accomplish a part of a mission, but would need to interact and exchange information with the other spacecraft to successfully execute the mission.

Hinchey, M. G.↗

Grossite-Rich Refractory Inclusions in Carbonaceous Chondrites: Evidence for Early Generation of Different O-Isotope Reservoirs in the Protoplanetary Disk and O-Isotope Exchange During Fluid-Rock Interaction

The oxygen isotopic composition of the Sun inferred from the measurements of the solar wind returned by the Genesis spacecraft is O-16-enriched (△O-17 = -28.4±3.6‰) relative to the whole-rock O-isotope compositions of chondrites and achondrites, and chondrule phenocrysts, which all plot close to the terrestrial fractionation line (△O-17 ∼ ±5‰). Vast majority of refractory inclusions (CAIs and AOAs) in carbonaceous chondrites of petrologic types 2-3.0 are iso-topically uniform and have solar-like △O-17. In contrast, CAIs and AOAs in metamorphosed CV and CO chondrites are isotopically heterogeneous with melilite, anorthite, perovskite, Zr- and Sc-rich oxides and silicates, and occasionally Al, Ti-diopside being O-16-depleted relative to hibonite, spinel, Al-diopside, and forsterite. The timing of generation of different O-isotope reservoirs and the nature of O-isotope heterogeneity in refractory inclusions in CO3 and CV3 chondrites are poorly known. Grossite (CaAl4O7) is one of the first minerals predicted to condense from a gas of solar composition and therefore it could have recorded isotopic compositions of reservoirs during the earliest stages of the Solar System evolution. Here we report on O-isotope compositions of grossite-rich CAIs in CH3 and CO3 chondrites measured in situ with the UH Cameca ims-1280. For analytical procedures see [9].

A N Krot↗

Modern Muon Physics: Selected Issues

The muon was discovered almost hundred years ago, but still remains largely a mystery. For a long time, the only difference between a muon and an electron was the approximately 200 times greater mass of the muon. However, with the later discovery of the charm quantum number, the muon played a decisive role in the formulation of the Standard Model of elementary particles, determining together with muon neutrino and the strange s and the charm c quarks the second generation of particles of this model. The equality of the reaction constant of muon decay with the constant of the vector interaction of beta-decay played a decisive role in the formulation of the conservation of the vector current (CVC) of the weak interaction of elementary particles. Processes involving muons testified in favor of the partial conservation of the axial current of weak interaction (PCAC), that is, one pion exchange in the interaction of the lepton and hadron currents. It was the muon that gave a rise to hopes of creating an alternative energy source within the framework of Muon Catalyzed Fusion (μCF). The possible realization of this process in the future as the intensity of muon beams increases can revolutionired energy supply. Nuclear fission by muons and the study of heavy-nucleus mesoatoms introduced muon physics into several separate branches of physical research.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Global transport of atmospheric smoke following a major nuclear exchange

A fully interactive zonally symmetric general circulation model is used to simulate the transport and evolution of a massive smoke cloud that is likely to form in the atmosphere following a major nuclear war. The presence of such a cloud significantly alters the simulated circulation and the subsequent transport of the smoke particles themselves. While the model indicates a tendency for interhemispheric exchange, the most immediate effect is that the radiatively active particles are carried into the stratosphere by the generation of strong vertical motions and intense convection regardless of their initial injection altitudes.

Haberle, R. M.↗

Hydration structure and energetics of iron-exchanged montmorillonite

The interaction between iron released from corroded steel canisters and bentonite is a key process influencing the long-term performance of nuclear waste repositories. In particular, the migration of Fe²⁺ into montmorillonite (Mnt) interlayers may alter its hydration, swelling, and ion-transport properties. In the present study, molecular dynamics simulations were performed to investigate the hydration behavior, structural response, and transport properties of Fe-exchanged montmorillonite (Fe-Mnt) under varying hydration states. The simulations focus on short- to intermediate-time-scale Fe 2+ and Fe 3+ interlayer exchange and hydration effects, and do not consider long-term structural substitution, Fe-bearing clay phase stabilization, or secondary iron mineral precipitation. Systems containing Na + -, Fe 2+ -, and Fe 3+ -Mnt were examined using both periodic and edge-exposed configurations to evaluate interlayer structure, ion exchange, and free energy of Fe intercalation. The results show that Fe ions influence the interlayer spacing primarily at low water contents (<1 bilayer), where Fe-Mnt exhibits a d-spacing 1–2 Å larger than Na-Mnt due to stronger hydration. The calculated hydration energies follow the order Fe 2+ $<$Fe 3+ $<$Na + . Both water and ion diffusion coefficients decrease upon Fe ion intercalation, with Fe 2+ ions diffusing an order of magnitude more slowly than those of Na + . Free energy profiles further confirm that Fe 2+ and Fe 3+ ions are thermodynamically favored in the interlayer, with Fe 3+ being the most stable. In conclusion, these findings provide molecular-scale insights into the mechanisms of Fe–Na exchange and their implications for bentonite alteration in repository environments.

clay↗

Charge exchange in solar wind-cometary interactions

A simple model of a cometary spherically symmetrical atmosphere and ionosphere is considered. An analytic solution of the governing equations describing the radial distribution of the neutral and ion densities is found. The new solution is compared to the well-known solution of the equations containing only ionization terms. Neglecting recombination causes a significant overestimate of the ion density in the vicinity of the comet. An axisymmetric model of the solar wind-cometary interaction is considered, taking into account the loss of solar wind ions due to charge exchange. The calculations predict that for active comets, solar wind absorption due to charge exchange becomes important at a few thousand kilometers from the nucleus, and a surface separating the shocked solar wind from the cometary ionosphere develops in this region. These calculations are in reasonable agreement with the few observations available for the ionopause location at comets.

Gombosi, T. I.↗

Hidden Spin-Isospin Exchange Symmetry

The strong interactions among nucleons have an approximate spin-isospin exchange symmetry that arises from the properties of quantum chromodynamics in the limit of many colors, N c . However this large- N c symmetry is well hidden and reveals itself only when averaging over intrinsic spin orientations. Furthermore, the symmetry is obscured unless the momentum resolution scale is close to an optimal scale that we call Λ large-N c . We show that the large-N c derivation requires a momentum resolution scale of Λ large-N c ~ 500 MeV. We derive a set of spin-isospin exchange sum rules and discuss implications for the spectrum of 30 P and applications to nuclear forces, nuclear structure calculations, and three-nucleon interactions.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Exchange correlation potentials from full configuration interaction in a Slater orbital basis

Ryabinkin–Kohut–Staroverov (RKS) theory builds a bridge between wave function theory and density functional theory by using quantities from the former to produce accurate exchange-correlation potentials needed by the latter. In this work, the RKS method is developed and tested alongside Slater atomic orbital basis functions for the first time. To evaluate this approach, full configuration interaction computations in the Slater orbital basis are employed to give quality input to RKS, allowing full correlation to be present along with correct nuclei cusps and asymptotic decay of the wavefunction. SlaterRKS is shown to be an efficient algorithm to arrive at exchange-correlation potentials without unphysical artifacts in moderately-sized basis sets. Furthermore, enforcement of the nuclear cusp conditions will be shown to be vital for the success of the Slater-basis RKS method. As a result, examples of weakly and strongly correlated molecular systems will demonstrate the main features of SlaterRKS.

74 ATOMIC AND MOLECULAR PHYSICS↗

Magnetogenesis by Wave-driven Momentum Exchange

When multiple species interact with an electrostatic ion acoustic wave, they can exchange momentum, despite the lack of momentum in the field itself. Furthermore, the resulting force on the electrons can have a curl, and thus give rise to compensating electric fields with curl on magnetohydrodynamic timescales. As a result, a magnetic field can be generated. Surprisingly, in some astrophysical settings, this mechanism can seed magnetic fields with growth rates even larger than through the traditional Biermann battery.

79 ASTRONOMY AND ASTROPHYSICS↗

Skyrmion–skyrmion interaction in a magnetic film

Interaction of two skyrmions stabilized by the ferromagnetic exchange, Dzyaloshinskii–Moriya interaction (DMI), and external magnetic field has been studied numerically on a 2D lattice of size large compared to the separation, d, between the skyrmions. We show that two skyrmions of the same chirality (determined by the symmetry of the crystal) repel. In accordance with earlier analytical results, their long-range pair interaction falls out with the separation as exp(-d/δ H ), where δ H is the magnetic screening length, independent of the DMI. The prefactor in this expression depends on the DMI that drives the repulsion. The latter results in the spiral motion of the two skyrmions around each other, with the separation between them growing logarithmically with time. When two skyrmions of the total topological charge Q = 2 are pushed close to each other, the discreteness of the atomic lattice makes them collapse into one skyrmion of charge Q = 1 below a critical separation. Experiment is proposed that would allow one to measure the interaction between two skyrmions by holding them in positions with two magnetic tips. Our findings should be of value for designing topologically protected magnetic memory based upon skyrmions.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Process Drivers, Inter-model Spread, and a Path Forward: What Do We Know About Arctic Amplification?

Over the recent decades, rapid changes have been observed in the Arctic resulting from enhanced surface warming in the Arctic relative to the rest of the globe, a phenomenon called Arctic Amplification. While surface-based amplification of Arctic warming in response to increased CO2 has been established. The driving mechanisms, relevant processes, and the relative roles of local and remote mechanisms to Arctic Amplification remain unclear. Research over the last decade has made it clear that coupling between the atmosphere, sea ice, and ocean play a key role in Arctic Amplification. This presentation summarizes recent research on the fundamental role that atmosphere-sea ice-ocean interactions and energy exchanges play in driving Arctic Amplification, how these interactions manifest as radiative climate feedbacks, and how these processes influence the differences in the projected Arctic climate change across CMIP5 and 6. We hypothesize that models that simulate larger warming do so by generating a larger local atmospheric circulation response that more effectively redistributes energy drawn from the ocean in sea ice retreat regions Arctic-wide and contributing to a larger increase in downwelling long wave radiation. This process is also fundamentally tied to the Arctic lapse rate feedback.

Patrick Charles Taylor↗