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DOE OSTI2024

Ocean cavity regime shift reversed West Antarctic grounding line retreat in the late Holocene

Recent geologic and modeled evidence suggests that the grounding line of the Siple Coast of the West Antarctic Ice Sheet (WAIS) retreated hundreds of kilometers beyond its present position in the middle to late Holocene and readvanced within the past 1.7 ka. This grounding line reversal has been attributed to both changing rates of isostatic rebound and regional climate change. Here, we test these two hypotheses using a proxy-informed ensemble of ice sheet model simulations with varying ocean thermal forcing, global glacioisostatic adjustment (GIA) model simulations, and coupled ice sheet-GIA simulations that consider the interactions between these processes. Our results indicate that a warm to cold ocean cavity regime shift is the most likely cause of this grounding line reversal, but that GIA influences the rate of ice sheet response to oceanic changes. This implies that the grounding line here is sensitive to future changes in sub-ice shelf ocean circulation.

58 GEOSCIENCES↗

DOE OSTI2023

Solar Uncertainty Management and Mitigation for Exceptional Reliability in Grid Operations (SUMMER-GO): Project Final Report

The Solar Uncertainty Management and Mitigation for Exceptional Reliability in Grid Operation (SUMMER-GO) project was recently completed through a collaboration among the National Renewable Energy Laboratory, Maxar, the Electric Reliability Council of Texas (ERCOT), the University of Texas at Dallas, the University of California Berkeley, and the University of Colorado Boulder. The project made significant advances in probabilistic solar power forecasting, both through the development of Bayesian model averaging methods for ensemble forecasting and in bringing these and other advancements into practice with Maxar's delivery of operational forecasts to ERCOT. In addition to creating more reliable solar power forecasts, the project developed methods for their utilization in power system operations. These include the development of risk-aware unit commitment and economic dispatch algorithms and methods to reformulate probabilistic forecasts to be used in these power system operational models. Dynamic power system reserve methods were also developed, which have been shown in silico to create economic savings and reliability improvements on an ERCOT-like system as well as financial savings in the ERCOT system through more granular consideration of the uncertainty associated with solar power forecasts. Finally, a situational awareness tool to help grid operators better understand solar power forecast uncertainty in daily operations was developed and extensively vetted.

14 SOLAR ENERGY↗

DOE OSTI2024

Systematic Underestimation of Canopy Conductance Sensitivity to Drought by Earth System Models

The response of vegetation canopy conductance (g c ) to changes in moisture availability ($γ^{m}_{gc}$) is a major source of uncertainty in climate projections. While vegetation typically reduces stomatal conductance during drought, accurately modeling how and to what degree stomata respond to changes in moisture availability at global scales is particularly challenging, because no global scale g c observations exist. Here, we leverage a collection of satellite, reanalysis and station-based near-surface air and surface temperature estimates, which are physically and statistically linked to $γ^{m}_{gc}$ due to the local cooling effect of g c through transpiration, to develop a novel emergent constraint of $γ^{m}_{gc}$ in an ensemble of Earth System Models (ESMs). We find that ESMs systematically underestimate $γ^{m}_{gc}$ by ~33%, particularly in grasslands, croplands, and savannas in semi-arid and bordering regions of the Central United States, Central Europe, Southeastern South America, Southern Africa, Eastern Australia, and parts of East Asia. We show that this underestimation occurs because ESMs inadequately reduce g c when soil moisture decreases. As g c controls carbon, water and energy fluxes, the misrepresentation of modeled $γ^{m}_{gc}$ contributes to biases in ESM projections of gross primary production, transpiration, and temperature during droughts. Our results suggest that the severity and duration of droughts may be misrepresented in ESMs due to the impact of sustained g c on both soil moisture dynamics and the biosphere-atmosphere feedbacks that affect local temperatures and regional weather patterns.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Measurements of H Λ 3 and H Λ 4 Lifetimes and Yields in Au + Au Collisions in the High Baryon Density Region

We report precision measurements of hypernuclei $^3_ΛH$ and $^4_ΛH$ lifetimes obtained from Au + Au collisions at $\sqrt{sNN}$ = 3.0 GeV and 7.2 GeV collected by the STAR experiment at the Relativistic Heavy Ion Collider, and the first measurement of $^3_ΛH$ and $^4_ΛH$ midrapidity yields in Au + Au collisions at $\sqrt{sNN}$ = 3.0 GeV. $^3_ΛH$ and $^4_ΛH$, being the two simplest bound states composed of hyperons and nucleons, are cornerstones in the field of hypernuclear physics. Their lifetimes are measured to be 221 ± 15 (stat) ± 19 (syst) ps for $^3_ΛH$ and 218 ± 6 (stat) ± 13 (syst) ps for $^4_ΛH$. The p T -integrated yields of $^3_ΛH$ and $^4_ΛH$ are presented in different centrality and rapidity intervals. It is observed that the shape of the rapidity distribution of $4_ΛH$ is different for 0%–10% and 10%–50% centrality collisions. Thermal model calculations, using the canonical ensemble for strangeness, describes the $^3_ΛH$ yield well, while underestimating the $^4_ΛH$ yield. Transport models, combining baryonic mean-field and coalescence (jam) or utilizing dynamical cluster formation via baryonic interactions (phqmd) for light nuclei and hypernuclei production, approximately describe the measured $^3_ΛH$ and $^4_ΛH$ yields. Our measurements provide means to precisely assess our understanding of the fundamental baryonic interactions with strange quarks, which can impact our understanding of more complicated systems involving hyperons, such as the interior of neutron stars or exotic hypernuclei.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2020

Data-Driven Linear Parameter-Varying Modeling and Control of Flexible Loads for Grid Services

Flexible loads have great potential to improve the electric grid's flexibility and stability. To effectively control large ensembles of heterogeneous loads, reliable models thereof are required. This paper presents a data-driven modeling and control approach to manage flexible loads for providing grid services. We leverage a linear parameter-varying autoregressive moving average (LPV-ARMA) model to describe the aggregate load response, where the parameters in the model are used to capture external environmental impacts (e.g., weather). A gain-scheduling feedback controller is then developed to adapt to environmental variations. This data-driven approach can be easily applied to different types of loads in various environmental conditions. In addition to the ensemble controller, distributed load controllers are designed to deliver grid services, while maintaining the quality of service of inherent load tasks. We demonstrate the work on the IEEE 37-node distribution system for real-time power regulation services through control of thermostatically controlled loads.

61 RADIATION PROTECTION AND DOSIMETRY↗

DOE OSTI2022

TULIP: An RNA-seq-based Primary Tumor Type Prediction Tool Using Convolutional Neural Networks

Background: With cancer as one of the leading causes of death worldwide, accurate primary tumor type prediction is critical in identifying genetic factors that can inhibit or slow tumor progression. There have been efforts to categorize primary tumor types with gene expression data using machine learning, and more recently with deep learning, in the last several years. Methods In this paper, we developed four 1-dimensional (1D) Convolutional Neural Network (CNN) models to classify RNA-seq count data as one of 17 highly represented primary tumor types or 32 primary tumor types regardless of imbalanced representation. Additionally, we adapted the models to take as input either all Ensembl genes (60,483) or protein coding genes only (19,758). Unlike previous work, we avoided selection bias by not filtering genes based on expression values. RNA-seq count data expressed as FPKM-UQ of 9,025 and 10,940 samples from The Cancer Genome Atlas (TCGA) were downloaded from the Genomic Data Commons (GDC) corresponding to 17 and 32 primary tumor types respectively for training and validating the models. Results: All 4 1D-CNN models had an overall accuracy of 94.7% to 97.6% on the test dataset. Further evaluation indicates that the models with protein coding genes only as features performed with better accuracy compared to the models with all Ensembl genes for both 17 and 32 primary tumor types. For all models, the accuracy by primary tumor type was above 80% for most primary tumor types. Conclusions: We packaged all 4 models as a Python-based deep learning classification tool called TULIP (TUmor CLassIfication Predictor) for performing quality control on primary tumor samples and characterizing cancer samples of unknown tumor type. Further optimization of the models is needed to improve the accuracy of certain primary tumor types.

Jones, Sara↗

DOE OSTI2022

Sensitivity Analysis of Wind and Turbulence Predictions With Mesoscale‐Coupled Large Eddy Simulations Using Ensemble Machine Learning

Abstract Coupling between mesoscale models and large‐eddy simulation (LES) models is increasingly used to more realistically represent the wide range of scales of atmospheric motions affecting boundary layer winds and turbulence that need to be simulated accurately for applications such as wind energy. However, such mesoscale‐to‐microscale coupled modeling frameworks are potentially affected by a large number of uncertain closure parameters. Here, we investigate the sensitivity associated with six closure parameters related to a 1.5‐order subgrid‐scale turbulence closure for an ensemble of mesoscale‐coupled LES. The simulations are performed using the Weather Research and Forecasting model nested from horizontal resolutions of greater than a kilometer down to tens of meters. Closure parameters are varied to generate perturbed parameter ensembles for two case studies of highly sheared, convective boundary layers observed in the Columbia Basin of Oregon and Washington during the Second Wind Forecast Improvement Project. Machine learning algorithms are used to explore the sensitivity of LES predictions, considering the effects of the perturbed physical parameters alongside categorical factors such as the case study identity, measurement location, and LES resolution. For the conditions we examine, a single parameter, the eddy viscosity coefficient, is the dominant source of parametric sensitivity and its importance is comparable to the categorical factors for several of the simulation response variables we examine.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Entanglement features of random neural network quantum states

Restricted Boltzmann machines (RBMs) are a class of neural networks that have been successfully employed as a variational ansatz for quantum many-body wave functions. Here, we develop an analytic method to study quantum many-body spin states encoded by random RBMs with independent and identically distributed complex Gaussian weights. By mapping the computation of ensemble-averaged quantities to statistical mechanics models, we are able to investigate the parameter space of the RBM ensemble in the thermodynamic limit. We discover qualitatively distinct wave functions by varying RBM parameters, which correspond to distinct phases in the equivalent statistical mechanics model. Notably, there is a regime in which the typical RBM states have near-maximal entanglement entropy in the thermodynamic limit, similar to that of Haar-random states. However, these states generically exhibit nonergodic behavior in the Ising basis, and do not form quantum state designs, making them distinguishable from Haar-random states.

36 MATERIALS SCIENCE↗

DOE OSTI2021

Model Evaluation and Intercomparison of Marine Warm Low Cloud Fractions With Neural Network Ensembles

Abstract Low cloud fractions (LCFs) and meteorological factors (MFs) over an oceanic region containing multiple cloud regimes are examined for three data sets: one Energy Exascale Earth System Model (E3SM) simulation with the default 72‐layer vertical grid (E3SM72), another one with 8‐times vertical resolution via the Framework for Improvement by Vertical Enhancement (E3SM 8), and one with MFs from ERA5 reanalysis and LCFs from the CERES SSF product (ERA5‐SSF). Neural networks (NNs) are trained to capture the relationship between MFs and LCF and to select the best‐performing MF subsets for predicting LCF. NN ensembles are used to (a) confirm the performance of selected MF subsets, (b) to serve as proxy models for each data set to predict LCFs for MFs from all data sets, and (c) to classify MFs into those in shared and uniquely occupied MF subspaces. Overall, E3SM72 and E3SM 8 have large fractions of MFs in shared MF subspace, but less so near the Californian and Peruvian stratocumulus decks. E3SM 8 and ERA5 have small fractions of MFs in shared MF subspace but greater than E3SM72 and ERA5, especially in the Southeast Pacific. The differences in LCFs between three pairs of data sets are decomposed into those associated with the differences in the LCF‐MF relationship and those involving different MFs. Given the same MFs, LCFs produced by E3SM 8 are greater than those produced by E3SM72 but are still different from those in ERA5‐SSF. In general, the shift in MFs dominates the difference in the LCFs.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Dynamic data-driven multiscale modeling for predicting the degradation of a 316L stainless steel nuclear cladding material

Here, we have developed a long short-term memory stacked ensemble (LSTM-SE) surrogate modeling approach that can provide rapid predictions of microstructural evolution and the resultant mechanical properties of American Iron and Steel Institute (AISI) 316L series stainless steel (316LSS) fuel cladding under conditions of varying temperature and radiation dose rate. To acquire training data, we developed and implemented a kinetic Monte Carlo (KMC) model to simulate precipitation kinetics of M 23 C 6 , γ', and G phases within SS316L cladding. Experimentally reported precipitation kinetics of SS316L in literature were linked to the kinetic parameters of the simulated precipitation in our KMC model. The model was then used to simulate microstructure evolution under synthetically generated treatments of varying temperature and radiation dose rate, for periods of up to 3000 hours. Changes in volume fraction, number density, and particle size of precipitates were recorded, and particle area fractions were correlated using statistical methods to develop the surrogate model. Simultaneously, the mechanical properties of the simulated microstructures were evaluated using microstructure-based finite element method (FEM) analysis to determine the elastic modulus, yield stress, ultimate tensile strength, and elongation to failure of the aged microstructures. Using this approach, our surrogate model can predict precipitation behavior within 0.25% volume fraction and mechanical properties within 6% relative error from the values predicted by the KMC and FEM models using 50 training simulations as input. The trained recurrent neural network-based model can return estimations of precipitation kinetics and mechanical properties ~1000 times faster than the physics-based codes. This work demonstrates, as a proof of concept, that reactor material service lifetimes under variable service conditions can be predicted for a statistics-based model from a practicably obtainable dataset.

36 MATERIALS SCIENCE↗

DOE OSTI2020

Data-Driven Linear Parameter-Varying Modeling and Control of Flexible Loads for Grid Services: Preprint

Flexible loads have great potential to improve the power grid's flexibility and stability. To effectively control large ensembles of heterogeneous loads, reliable models thereof are required. The paper presents a data-driven modeling and control approach to manage flexible loads for providing grid services. We leverage a linear parameter-varying autoregressive moving average (LPV-ARMA) model to describe the aggregate load response, where the parameters in the model are used to capture external environment impacts (e.g., weather). A gain-scheduling feedback controller is then developed to adapt to environmental variations. This data-driven approach can be easily applied to different types of loads in various environmental conditions. In addition to the ensemble controller, distributed load controllers are designed to deliver grid services, while maintaining the quality of service of inherent load tasks. We demonstrate the work on the IEEE 37-node distribution system for real-time power regulation services through control of thermostatically controlled loads.

control↗

DOE OSTI2023

Isolating the effect of biomass burning aerosol emissions on 20th century hydroclimate in South America and Southeast Asia

Abstract Biomass burning is a significant source of aerosol emissions in some regions and has a considerable impact on regional climate. Earth system model simulations indicate that increased biomass burning aerosol emissions contributed to statistically significant decreases in tropical precipitation over the 20th century. In this study, we use the Community Earth System Model version 1 Large Ensemble (CESM1-LENS) experiment to evaluate the mechanisms by which biomass burning aerosol contributed to decreased tropical precipitation, with a focus on South America and Southeast Asia. We analyze the all-but-one forcing simulations in which biomass burning aerosol emissions are held constant while other forcings (e.g., greenhouse gas concentrations) vary throughout the 20th century. This allows us to isolate the influence of biomass burning aerosol on processes that contribute to decreasing precipitation, including cloud microphysics, the radiative effects of absorbing aerosol particles, and alterations in regional circulation. We also show that the 20th century reduction in precipitation identified in the CESM1-LENS historical and biomass burning experiments is consistent across Coupled Model Intercomparison Project Phase 5 models with interactive aerosol schemes and the CESM2 single-forcing experiment. Our results demonstrate that higher concentrations of biomass burning aerosol increases the quantity of cloud condensation nuclei and cloud droplets, limiting cloud droplet size and precipitation formation. Additionally, absorbing aerosols (e.g., black carbon) contribute to a warmer cloud layer, which promotes cloud evaporation, increases atmospheric stability, and alters regional circulation patterns. Corresponding convectively coupled circulation responses, particularly over the tropical Andes, contribute to further reducing the flow of moisture and moisture convergence over tropical land. These results elucidate the processes that affect the water cycle in regions prone to biomass burning and inform our understanding of how future changes in aerosol emissions may impact tropical precipitation over the 21st century.

Environmental Sciences & Ecology↗

DOE OSTI2021

The Climate Response to Emissions Reductions Due to COVID-19: Initial Results From CovidMIP

Many nations responded to the COVID-19 pandemic by restricting travel and other activities during 2020, resulting in temporarily reduced emissions of CO 2 , other greenhouse gases and ozone and aerosol precursors. We perform a coordinated Intercomparison, CovidMIP, of Earth System model simulations to assess the impact on climate of these emissions reductions. Eleven models performed multiple initial-condition ensembles to produce over 280 simulations spanning both initial condition and model structural uncertainty. We find model consensus on reduced aerosol amounts (particularly over East Asia) and associated increases in surface shortwave radiation levels. However, any impact on near-surface temperature or rainfall during 2020-2024 is extremely small and is not detectable in this initial analysis. Regional analyses on a finer scale, and closer attention to extremes (especially linked to changes in atmospheric composition and air quality) are required to test the impact of COVID-19-related emission reductions on near-term climate.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Kinetic theory of particle-in-cell simulation plasma and the ensemble averaging technique

Abstract We derive the kinetic theory of fluctuations in physically and numerically stable particle-in-cell (PIC) simulations of electrostatic plasmas. The starting point is the single-time correlation at the start of the simulation between the statistical fluctuations of the weighted densities of macroparticle centers in the plasma particle phase-space. The fluctuations are associated with different initial conditions, typically due to the random initial conditions (in velocity space) of the macroparticles/simulation plasma, assigned according to their initial distribution of probability. The single-time correlations at all time steps and in each spatial grid cell are then determined from the Laplace–Fourier transforms of the discretized Klimontovich-like equation for the macroparticles and Maxwell’s equations for the fields, as computed by modern PIC codes. We recover the expressions for the electrostatic field and the plasma particle density fluctuation autocorrelation spectra as well as the kinetic equations describing the average evolution of PIC-simulated plasma particles, first derived by Langdon (1970b Proc. 4th Conf. Numerical Simulation of Plasmas ) using a test macroparticle approach perturbing a discretized Vlasovian plasma and then averaging the obtained physical quantity over the initial macroparticle velocity distribution. We generalize and extend these results to the modern algorithms in PIC codes using arbitrary macroparticle weights. Analytical estimates of statistical fluctuation amplitudes are derived as a function of the plasma simulation parameters, using the central limit theorem in the limit of a large number of macroparticles per cell. The theory is then used to analyze the ensemble averaging technique of PIC simulations where statistical averages are performed over ensembles of PIC simulations, modeling the same plasma physics problem but using different statistical realizations of the initial distribution functions of the macroparticles. This method is illustrated by linear Landau damping uncovering (from noise, which is usually considered numerical) the physical fluctuations driven by a single small amplitude electrostatic wave perturbing a PIC simulation plasma in equilibrium.

fluctuations correlations↗

DOE OSTI2023

Diagnosing Near-Surface Model Errors with Candidate Physics Parameterization Schemes for the Multiphysics Rapid Refresh Forecast System (RRFS) Ensemble during Winter over the Northeastern United States and Southern Great Plains

Abstract During the winter of 2020/21 an ensemble of FV3-LAM forecasts was produced over the contiguous United States for the Winter Weather Experiment using five physics suites. These forecasts are evaluated with the goal of optimizing physics parameterizations within the future operational Rapid Refresh Forecast System (RRFS) in the Unified Forecast System (UFS) realm and for selecting suitable physics suites for a multiphysics RRFS ensemble. The five physics suites have different combinations of land surface models (LSMs), planetary boundary layer (PBL) parameterizations, and surface layer schemes, chosen from those used in current and possible future operational systems and likely to be supported in the operational UFS. Full-season evaluation reveals a persistent near-surface cold bias in the U.S. Northeast from one suite and a nighttime warm bias in the southern Great Plains in another suite, while other suites have smaller biases. A representative case is chosen to diagnose the cause for each of these biases using sensitivity simulations with different physics combinations or modified parameters and verified with additional mesonet observations. The cold bias in the Northeast is attributed to aspects of the Noah-MP LSM over snow cover, where Noah-MP simulates lower soil water content, and thus lower thermal conductivity than other LSMs, leading to less upward ground heat flux during nighttime and consequently lower surface temperature. The nighttime warm bias found in the southern Great Plains is attributed to overestimation of vertical mixing in the K -profile-based eddy-diffusivity mass-flux (K-EDMF) PBL scheme and insufficient land–atmospheric coupling from the GFS surface layer scheme over short vegetation. A few key parameters driving these systematic biases are identified.

Meteorology & Atmospheric Sciences↗

DOE OSTI2025

Vegetation biogeography is a main source of uncertainty in modelling the land carbon cycle

The terrestrial biosphere exchanges a large amount of CO 2 with the atmosphere through photosynthesis and respiration, determining the magnitude of land carbon sink and consequently influencing the rate of global warming. The magnitudes of global photosynthesis and respiration, however, vary widely across models (100-200 PgC/year), constituting a key and persistent source of uncertainty in carbon cycle and climate modelling. Here, we argue that the uncertainty in the land carbon cycle modelling is largely attributable to the uncertainty in biogeography – the distribution of plant functional types (PFTs). Using an ensemble of dynamic global vegetation models (DGVMs), we find a strong dependence of total photosynthesis on total area for each PFT. The dependence allows us to reduce the spread of land carbon cycle estimates by ~75% using remote sensing-based PFT maps. We further find that 56 ± 21% of climate-driven changes in global photosynthesis modelled by DGVMs are caused by changes in PFT distribution in the last two decades. Our study identifies vegetation biogeography as a main controlling factor of uncertainty in land carbon cycle modelling and highlights the importance of biogeography-climate interactions in carbon cycle and climate studies.

Zhao, Ruiying [National Univ. of Singapore (Singap↗

DOE OSTI2025

Huge ensembles – Part 1: Design of ensemble weather forecasts using spherical Fourier neural operators

Abstract. Simulating low-likelihood high-impact extreme weather events in a warming world is a significant and challenging task for current ensemble forecasting systems. While these systems presently use up to 100 members, larger ensembles could enrich the sampling of internal variability. They may capture the long tails associated with climate hazards better than traditional ensemble sizes. Due to computational constraints, it is infeasible to generate huge ensembles (comprised of 1000–10 000 members) with traditional, physics-based numerical models. In this two-part paper, we replace traditional numerical simulations with machine learning (ML) to generate hindcasts of huge ensembles. In Part 1, we construct an ensemble weather forecasting system based on spherical Fourier neural operators (SFNOs), and we discuss important design decisions for constructing such an ensemble. The ensemble represents model uncertainty through perturbed-parameter techniques, and it represents initial condition uncertainty through bred vectors, which sample the fastest-growing modes of the forecast. Using the European Centre for Medium-Range Weather Forecasts Integrated Forecasting System (IFS) as a baseline, we develop an evaluation pipeline composed of mean, spectral, and extreme diagnostics. With large-scale, distributed SFNOs with 1.1 billion learned parameters, we achieve calibrated probabilistic forecasts. As the trajectories of the individual members diverge, the ML ensemble mean spectra degrade with lead time, consistent with physical expectations. However, the individual ensemble members' spectra stay constant with lead time. Therefore, these members simulate realistic weather states during the rollout, and the ML ensemble passes a crucial spectral test in the literature. The IFS and ML ensembles have similar extreme forecast indices, and we show that the ML extreme weather forecasts are reliable and discriminating. These diagnostics ensure that the ensemble can reliably simulate the time evolution of the atmosphere, including low-likelihood high-impact extremes. In Part 2, we generate a huge ensemble initialized each day in summer 2023, and we characterize the simulations of extremes.

Mahesh, Ankur↗

DOE OSTI2025

MINE: maximally informative next experiment—toward a new GWAS experimental design and methodology

Abstract The computational methodology of Genome Wide Association Studies (GWAS) currently has several limitations: (i) the number of observations (rows) on a quantitative trait tends to be smaller than the number of single nucleotide polymorphisms (SNPs) (columns) in the design matrix; (ii) each SNP is usually modeled separately, failing to acknowledge interaction between each other (ie epistasis); (iii) there is implicit linkage disequilibrium (LD) between neighboring SNPs due to their linkage. To overcome these issues, we developed a tool that uses ensemble methods to fit mixed linear models to GWAS data, and these ensemble methods include the development of a new experimental design approach in GWAS, which uses the resultant models and data to select the next informative experiment over time. This new adaptive and staged approach for GWAS experimental design was developed and tested in a 3 yr adaptive model-guided discovery experiment against a fixed classical design. In Sorghum bicolor a total of 79, 86, and 78 accessions were tested in years 1, 2, and 3, respectively out of 343 accessions available in the Bioenergy Association Panel (BAP) each identified for 232,303 SNPs, 1 every 2–3 kb in the genomes. We demonstrated the feasibility of MINE enacted with 8 people in the field per year over 3 yr vs in 1 large classical design enacted with 20 people in 1 yr. The MINE results for chromosomal regions identified controlling dry weight were confirmed against results from previous sorghum GWAS experiments and 1 large classical design for the BAP panel.

Genetics & Heredity↗