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DOE OSTI2021

Non-additive microbial community responses to environmental complexity

Environmental composition is a major, though poorly understood, determinant of microbiome dynamics. Here we ask whether general principles govern how microbial community growth yield and diversity scale with an increasing number of environmental molecules. By assembling hundreds of synthetic consortia in vitro, we find that growth yield can remain constant or increase in a non-additive manner with environmental complexity. Conversely, taxonomic diversity is often much lower than expected. To better understand these deviations, we formulate metrics for epistatic interactions between environments and use them to compare our results to communities simulated with experimentally-parametrized consumer resource models. We find that key metabolic and ecological factors, including species similarity, degree of specialization, and metabolic interactions, modulate the observed non-additivity and govern the response of communities to combinations of resource pools. Our results demonstrate that environmental complexity alone is not sufficient for maintaining community diversity, and provide practical guidance for designing and controlling microbial ecosystems.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1990

High altitude aircraft remote sensing during the 1988 Yellowstone National Park wildfires

An overview is presented of the effects of the wildfires that occurred in the Yellowstone National Park during 1988 and the techniques employed to combat these fires with the use of remote sensing. The fire management team utilized King-Air and Merlin aircraft flying night missions with a thermal IR line-scanning system. NASA-Ames Research Center assisted with an ER-2 high altitude aircraft with the ability to down-link active data from the aircraft via a teledetection system. The ER-2 was equipped with a multispectral Thematic Mapper Simulator scanner and the resultant map data and video imagery was provided to the fire command personnel for field evaluation and fire suppression activities. This type of information proved very valuable to the fire control management personnel and to the continuing ecological research goals of NASA-Ames scientists analyzing the effects of burn type and severity on ecosystem recovery and development.

Ambrosia, Vincent G.↗

NASA NTRS2000

The Urban Fabric of the City as Its Affects Thermal Energy Responses Derived from Remote Sensing Data

The physical geography of the city affects numerous aspects of its interlinked biophysical, social, and land-atmosphere characteristics - those attributes that come together to form the total urban environment. One approach to studying the multitude of interactions that occur as a result of urbanization is to view the city from a systems ecology perspective, where energy and material cycle into and out of the urban milieu. Thus, the urban ecosystem is synergistic in linking land, air, water, and living organisms in a vast network of interrelated physical, human, and biological process. Given the number and the shear complexity of the exchanges and, ultimately, their effects, that occur within the urban environment, we are focusing our research on looking at how the morphology or urban fabric of the city, drives thermal energy exchanges across the urban landscape. The study of thermal energy attributes for different cities provides insight into how thermal fluxes and characteristics are partitioned across the city landscape in response to each city's morphology. We are using thermal infrared remote sensing data obtained at a high spatial resolution from aircraft, along with satellite data, to identify and quantify thermal energy characteristics for 4 U.S. cities: Atlanta, GA, Baton Rouge, LA, Salt Lake City, UT, and Sacramento, CA. Analysis of how thermal energy is spatially distributed across the urban landscapes for these cities provides a unique perspective for understanding how the differing morphology of cities forces land-atmosphere exchanges, such as the urban heat island effect, as well as related meteorological and air quality interactions. Keyword: urban ecosystems, remote sensing, urban heat island

Quattrochi, Dale A.↗

NASA NTRS2016

Caribbean Oceans: Utilizing NASA Earth Observations to Detect, Monitor, and Respond to Unprecedented Levels of Sargassum in the Caribbean Sea

In 2011 and 2015, the nations of the Caribbean Sea were overwhelmed by the unprecedented quantity of Sargassum that washed ashore. This issue prompted international discussion to better understand the origins, distribution, and movement of Sargassum, a free-floating brown macro alga with ecological, environmental, and commercial importance. In the open ocean, Sargassum mats serve a vital ecological function. However, when large quantities appear onshore without warning, Sargassum threatens local tourist industries and nearshore ecosystems within the Caribbean. As part of the international response, this project investigated the proliferation of this macro alga within the Caribbean Sea from 2003-2015, and used NASA Earth observations to detect and model Sargassum growth across the region. The Caribbean Oceans team calculated the Floating Algal Index (FAI) using Terra Moderate Resolution Imaging Spectroradiometer (MODIS) data, and compared the FAI to various oceanic variables to determine the ideal pelagic environment for Sargassum growth. The project also examined the annual spread of Sargassum throughout the region by using Earth Trends Modeler (ETM) in Clark Labs' TerrSet software. As part of the international effort to better understand the life cycle of Sargassum in the Caribbean, the results of this project will help local economies promote sustainable management practices in the region.

Ped, Jordan↗

NASA NTRS1994

Bioregenerative life-support systems

Long-duration future habitation of space involving great distances from Earth and/or large crew sizes (eg, lunar outpost, Mars base) will require a controlled ecological life-support system (CELSS) to simultaneously revitalize atmosphere (liberate oxygen and fix carbon dioxide), purify water (via transpiration), and generate human food (for a vegetarian diet). Photosynthetic higher plants and algae will provide the essential functions of biomass productivity in a CELSS, and a combination of physicochemical and bioregenerative processes will be used to regenerate renewable resources from waste materials. Crop selection criteria for a CELSS include nutritional use characteristics as well as horticultural characteristics. Cereals, legumes, and oilseed crops are used to provide the major macronutrients for the CELSS diet. A National Aeronautics and Space Administration (NASA) Specialized Center of Research and Training (NSCORT) was established at Purdue University to establish proof of the concept of the sustainability of a CELSS. The Biosphere 2 project in Arizona is providing a model for predicted and unpredicted situations that arise as a result of closure in a complex natural ecosystem.

NASA Discipline Life Support Systems↗

DOE OSTI2020

Bioenergy landscapes drive trophic shifts in generalist ants

Changes in trophic niche—the pathways through which an organism obtains energy and nutrients—are a fundamental way in which organisms respond to environmental conditions. But the capacity for species to alter their trophic niches in response to global change, and the ways they do so when able, remain largely unknown. Here we examine food webs in three long–term and large–scale experiments to test how resource availability and nutritional requirements interact to determine an organism's trophic niche in the context of one of the largest global trends in land use—the rise in bioenergy production. Here, we use carbon and nitrogen stable isotope analyses to characterize arthropod food webs across three biofuel crops representing a gradient in plant resource richness (corn monocultures, fields dominated by native switchgrass and restored prairie), and to quantify changes in the trophic niche of a widespread generalist ant species across habitats. In doing so, we measure the effects of basal resource richness on food chain length, niche breadth and trophic position. We frame our results in the context of two hypotheses that explain variation in trophic niche—the niche variation hypothesis which emphasizes the importance of resource diversity and ecological opportunity, and the optimal diet hypothesis which emphasizes dietary constraints and the availability of optimal resources. Increasing plant richness lengthened food chains by 10%–20% compared to monocultures. Niche breadths of generalist ants did not vary with resource richness, suggesting they were limited by optimal diet requirements and constraints rather than by ecological opportunity. The ants instead responded to changes in plant richness by shifting their estimated trophic position. In resource–poor monocultures, the ants were top predators, sharing a trophic position with predatory spiders. In resource–rich environments, in contrast, the ants were omnivores, relying on a mix of animal prey and plant–based resources. In addition to highlighting novel ecosystem impacts of alternate bioenergy landscapes, our results suggest that niche breadth and trophic diversification depend more on the presence of optimal resources than on ecological opportunity alone.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

Impact of Changing Winds on the Mauna Loa CO 2 Seasonal Cycle in Relation to the Pacific Decadal Oscillation

Abstract Long‐term measurements at the Mauna Loa Observatory (MLO) show that the CO 2 seasonal cycle amplitude (SCA) increased from 1959 to 2019 at an overall rate of 0.22 0.034 ppm decade −1 while also varying on interannual to decadal time scales. These SCA changes are a signature of changes in land ecological CO 2 fluxes as well as shifting winds. Simulations with the TM3 tracer transport model and CO 2 fluxes from the Jena CarboScope CO 2 Inversion suggest that shifting winds alone have contributed to a decrease in SCA of −0.10 0.022 ppm decade −1 from 1959 to 2019, partly offsetting the observed long‐term SCA increase associated with enhanced ecosystem net primary production. According to these simulations and MIROC‐ACTM simulations, the shorter‐term variability of MLO SCA is nearly equally driven by varying ecological CO 2 fluxes (49%) and varying winds (51%). We also show that the MLO SCA is strongly correlated with the Pacific Decadal Oscillation (PDO) due to varying winds, as well as with a closely related wind index (U‐PDO). Since 1980, 44% of the wind‐driven SCA decrease has been tied to a secular trend in the U‐PDO, which is associated with a progressive weakening of westerly winds at 700 mbar over the central Pacific from 20°N to 40°N. Similar impacts of varying winds on the SCA are seen in simulations at other low‐latitude Pacific stations, illustrating the difficulty of constraining trend and variability of land CO 2 fluxes using observations from low latitudes due to the complexity of circulation changes.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Ecological Monitoring and Compliance Program 2020 Report

The Ecological Monitoring and Compliance Program (EMAC), funded through the U.S. Department of Energy, National Nuclear Security Administration Nevada Field Office (NNSA/NFO), monitors the ecosystem of the Nevada National Security Site (NNSS) and ensures compliance with laws and regulations pertaining to NNSS biota. This report summarizes the program’s activities conducted by Mission Support and Test Services, LLC (MSTS), during calendar year 2020. Program activities included (a) biological surveys at proposed activity sites, (b) desert tortoise compliance, (c) ecosystem monitoring, (d) sensitive and protected/regulated plant monitoring, (e) sensitive and protected/regulated animal monitoring, and (f) habitat restoration monitoring. During 2020, all applicable laws, regulations, and permit requirements were met, enabling EMAC to achieve its intended goals and objectives.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1991

BOREAS (Boreal Ecosystem-Atmosphere Study): Global change and biosphere-atmosphere interactions in the boreal forest

The Boreal Ecosystems Atmosphere Study (BOREAS) is a cooperative field and analysis project involving elements of land surface climatology, tropospheric chemistry, and terrestrial ecology. The goal of the study is to understand the interactions between the boreal forest biome and the atmosphere in order to clarify their roles in global change. The study will be centered on two 20 by 20 km sites within the North American boreal forest region, located near the northern and southern limits of the biome. Studies based at these sites will be used to explore the roles of various environmental factors in controlling the extent and character of the biome. The sites will be the subject of surface, airborne, and satellite based observations which aim to improve understanding of the biological and physical processes and states which govern the exchanges of energy, water, carbon, and trace gases between boreal forest ecosystems and the atmosphere. Particular reference will be made to those processes and states that may be sensitive to global change. The study also aims to develop the use of remote sensing techniques to transfer understanding of the above process from local scales out to regional scales. The BOREAS project is being planned for 1992-1996, with a major field effort in 1994.

Sellers, Piers J.↗

DOE OSTI2022

NEONiso R Package, versions greater than 0.5.2

Carbon fluxes in terrestrial ecosystems and their response to environmental change are a major source of uncertainty in the modern carbon cycle. The National Ecological Observatory Network (NEON) presents the opportunity to merge eddy covariance (EC)-derived fluxes with CO2 isotope ratio measurements to gain insights into carbon cycle processes. Collected continuously and consistently across >40 sites, NEON EC and isotope data facilitate novel integrative analyses. However, currently provisioned atmospheric isotope data are uncalibrated, greatly limiting ability to perform cross-site analyses. Here, we present two approaches to calibrating NEON CO2 isotope ratios, along with an R package to calibrate NEON data. We find that calibrating CO2 isotopologues independently yields a lower d13C bias (<0.05‰) and higher precision (<0.40‰) than directly correcting d13C with linear regression (bias: <0.11‰, precision: 0.42‰), but with slightly higher error and lower precision in calibrated CO2 mole fraction. The magnitude of the corrections to d13C and CO2 mole fractions vary substantially by site, underscoring the need for users to apply a consistent calibration framework to data in the NEON archive. Post-calibration data sets show that site mean annual d13C correlates negatively with precipitation, temperature, and aridity, but positively with elevation. Forested and agricultural ecosystems exhibit larger gradients in CO2 and d13C than other sites, particularly during the summer and at night. The overview and analysis tools developed here will facilitate cross-site analysis using NEON data, provide a model for other continental-scale observational networks, and enable new advances leveraging the isotope ratios of specific carbon fluxes.

Fiorella, Richard↗

DOE OSTI2020

Do Cell Wall Esters Facilitate Forest Response to Climate?

Terrestrial ecosystem dynamics are strongly modified by stresses associated with climate change, impacting plant growth and development, mortality, and ecological succession. Finally, we highlight the potential role of plant cell wall esters to link changes in cell wall structure and function with biosphere-atmosphere fluxes of methanol, acetic acid, carbon dioxide (CO 2 ), and water (H 2 O).

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2020

Microbiomes Reduce Their Host’s Sensitivity to Interspecific Interactions

Description of the Earth’s microbiota has recently undergone a phenomenal expansion that has challenged basic assumptions in many areas of biology, including hominid evolution, human gastrointestinal and neurodevelopmental disorders, and plant adaptation to climate change. By using the classic model system of freshwater phytoplankton that has been drawn upon for numerous foundational theories in ecology, we show that microbiomes, by facilitating their host population, can also influence between-species interactions among their eukaryotic hosts. Between-species interactions, including competition for resources, has been a central tenet in the field of ecology because of its implications for the diversity and composition of communities and how this in turn shapes ecosystem functioning.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Importance of suberin biopolymer in plant function, contributions to soil organic carbon and in the production of bio-derived energy and materials

Abstract Suberin is a hydrophobic biopolymer of significance in the production of biomass-derived materials and in biogeochemical cycling in terrestrial ecosystems. Here, we describe suberin structure and biosynthesis, and its importance in biological (i.e., plant bark and roots), ecological (soil organic carbon) and economic (biomass conversion to bioproducts) contexts. Furthermore, we highlight the genomics and analytical approaches currently available and explore opportunities for future technologies to study suberin in quantitative and/or high-throughput platforms in bioenergy crops. A greater understanding of suberin structure and production in lignocellulosic biomass can be leveraged to improve representation in life cycle analysis and techno-economic analysis models and enable performance improvements in plant biosystems as well as informed crop system management to achieve economic and environmental co-benefits.

09 BIOMASS FUELS↗

DOE OSTI2022

Raw seedling and sapling census data collected from June 2015 - April 2019 within a tropical wet forest in Puerto Rico

This data package contains data used to evaluate the effects of experimental warming (4˚C above ambient), drought, and hurricane disturbance on species richness, diversity, and composition of understory plant communities across ontogeny at the Tropical Responses to Altered Climate Experiment (TRACE) in Luquillo, Puerto Rico. The raw data in this package include a file for the species composition matrix of woody seedlings (>10 cm and <20 cm height; TRACE_composition_seedling.csv) and saplings (>20 cm height; TRACE_composition_sapling.csv) within the six TRACE plots, collected during six census dates from June 2015 to April 2019. Also included is also a file with the species names associated with the species codes found in the composition files (TRACE_species_codes.csv), and a data dictionary file describing the columns in the composition files (data_dictionary_composition_files.csv). All data files are in csv format, with the exception of the metadata which is in xml format.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Bioenergy cropping systems shape ant community composition and functional roles

The adoption of biomass crops grown for energy is a likely source of major landscape change in coming decades during the transition from fossil fuels. There are a wide range of cropping systems that have not been widely deployed yet but could become commonplace, and our knowledge of their ecological attributes and biodiversity impacts is limited. Ants are prominent and functionally important components of grassland and agricultural ecosystems. Given their outsized influences on ecosystem structure and function, we sought to understand how ant communities are likely to be shaped by a range of bioenergy cropping systems. We characterized ant communities in a long-term experimental array in Michigan, USA containing ten dedicated bioenergy crops including annual monocultures, simple monoculture or near-monoculture perennial grasses, and complex polyculture systems. Community composition differed strongly among cropping systems, and ants were more abundant, species-rich, and functionally diverse in complex systems than in simpler systems, particularly annual crops. Our results illustrate the divergent effects that bioenergy crop adoption could have for ant communities and the important functions they carry out in agroecosystems.

Haan, Nathan L.↗

NASA NTRS2019

Negative extreme events in gross primary productivity and their drivers in China during the past three decades

Climate extremes have remarkable impacts on ecosystems and are expected to increase with future global warming. However, only few studies have focused on the ecological extreme events and their drivers in China. In this study, we carried out an analysis of negative extreme events in gross primary productivity (GPP) in China and the sub-regions during 1982–2015, using monthly GPP simulated by 12 process-based models (TRENDYv6) and an observation-based model (Yao-GPP). Extremes were defined as the negative 5th percentile of GPP anomalies, which were further merged into individual extreme events using a three-dimensional contiguous algorithm. Spatio-temporal patterns of negative GPP anomalies were analyzed by taking the 1000 largest extreme events into consideration. Results showed that the effects of extreme events decreased annual GPP by 2.8% (i.e. 208 TgC/year) in TRENDY models and 2.3% (i.e. 151 TgC/year) in Yao-GPP. Hotspots of extreme GPP deficits were mainly observed in North China (−53 gC/sq.m year) in TRENDY models and Northeast China (−42 gC/sq.m year) in Yao-GPP. For China as a whole, attribution analyses suggested that extreme low precipitation was associated with 40%–50% of extreme negative GPP events. Most events in northern and western China could be explained by meteorological droughts (i.e. low precipitation) while GPP extreme events in southern China were more associated with temperature extremes, in particular with cold spells. GPP was revealed to be much more sensitive to heat/drought than to cold/wet extreme events. Combined with projected changes in climate extremes in China, GPP negative anomalies caused by drought events in northern China and by temperature extremes in southern China might be more prominent in the future.

Climate change↗

NASA NTRS2022

Western Sonoran Desert Water Resources: Evaluating Rock Pool Hydroperiod Fluctuation using Climate Variables to Inform Habitat Monitoring and Protection in the Western Sonoran Desert

Ephemeral freshwater rock pools, known as tinajas, have great biologic and cultural importance as sources of surface water in the western Sonoran Desert (WSD). Tinaja flooding and drying cycles, known as hydroperiods, vary based on meteorologic and climatologic conditions; however, a lack of extensive research relating climatic impacts to tinajas puts these critical ecosystems further at risk. The National Park Service (NPS) and the University of Arizona monitor the physical and ecological condition of tinajas in Organ Pipe Cactus National Monument (OPCNM), AZ, using resource-intensive strategies: in situ trail cameras and direct measurements. To aid monitoring efforts, the NASA DEVELOP team aimed to incorporate remote sensing into NPS strategies by analyzing spatiotemporal climate data and tinaja hydroperiods in OPCNM between 1979–2022. Using Aqua and Terra Moderate Resolution Imaging Spectroradiometers (MODIS), University of Idaho Gridded Surface Meteorological Dataset (gridMET), and OpenET data, the team generated climatology maps and time series for OPCNM. The team compared these data to daily in situ hydroperiod observations from the University of Arizona between 2019–2022. Climate maps and time series showed increases in temperature and solar radiation (p<0.05), while analyses of in situ data showed correlations of hydroperiods with precipitation and evapotranspiration. End products identified high-risk tinajas and demonstrated that Earth observations can successfully be correlated with in situ hydroperiod observations. These results will support NPS efforts to prioritize water resource management and inform protocols driving the conservation of tinajas in OPCNM.

Anne Britton↗

NASA NTRS2024

PACE Technical Report Series, Volume 12: The PACE Level 1C data format

NASA's Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission will make global ocean color and atmospheric measurements to provide extended data records of ocean ecology and global biogeochemistry, along with polarimetric measurements for advanced observations of aerosols, clouds and the ocean. PACE will contain three instruments: the primary Ocean Color Instrument (OCI), and two multi-angle polarimeters (MAPs). The latter instruments are contributed under a ‘Do-No-Harm’ (to the rest of the PACE mission) principle, and the PACE Science Data Processing System (SDPS) is only required to produce Level-1b (geolocated radiances with calibration applied) data without performance requirements. However, there is a strong desire to produce data in a format that merges the disparate spatial resolutions, viewing geometry and sampling nature of the three instruments. Our terminology for this format is Level 1c (L1C). This format will be an input to Level 2 algorithms produced from standalone MAP instrument observations, or from algorithms employing multi-sensor fusion. Creating the L1C format has several components. This includes choice of projection method, the means by which multi-angle views are properly incorporated into that projection (‘aggregation’) the means to represent wavelength and light polarization state, the selection of data to be included within the L1C file, and the handling of ancillary data either required for L1C file generation or needed in that format for L2 processing.

PACE↗