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At least 541 records · Page 30

Global gridded crop harvested area, production, yield, and monthly physical area data circa 2015

Abstract Here we provide an update to global gridded annual and monthly crop datasets. This new dataset uses the crop categories established by the Global Agro-Ecological Zones (GAEZ) Version 3 model, which is based on the Food and Agricultural Organization of the United Nations (FAO) crop production data. We used publicly available data from the FAOSTAT database as well as GAEZ Version 4 global gridded dataset to generate circa 2015 annual crop harvested area, production, and yields by crop production system (irrigated and rainfed) for 26 crops and crop categories globally at 5-minute resolution. We additionally used available data on crop rotations, cropping intensity, and planting and harvest dates to generate monthly gridded cropland data for physical areas for the 26 crops by production system. These data are in standard georeferenced gridded format, and can be used by any global hydrology, land surface, or other earth system model that requires gridded annual or monthly crop data inputs.

54 ENVIRONMENTAL SCIENCES↗

Methods and Experiences for Developing Abstractions for Data-intensive, Scientific Applications

Developing software for scientific applications that require the integration of diverse types of computing, instruments, and data present challenges that are distinct from commercial software. These applications require scale, and the need to integrate various programming and computational models with evolving and heterogeneous infrastructure. Pervasive and effective abstractions for distributed infrastructures are thus critical; however, the process of developing abstractions for scientific applications and infrastructures is not well understood. While theory-based approaches for system development are suited for well-defined, closed environments, they have severe limitations for designing abstractions for scientific systems and applications. The design science research (DSR) method provides the basis for designing practical systems that can handle real-world complexities at all levels. In contrast to theory-centric approaches, DSR emphasizes both practical relevance and knowledge creation by building and rigorously evaluating all artifacts. In this work, we show how DSR provides a well-defined framework for developing abstractions and middleware systems for distributed systems. Specifically, we address the critical problem of distributed resource management on heterogeneous infrastructure over a dynamic range of scales, a challenge that currently limits many scientific applications. We use the pilot-abstraction, a widely used resource management abstraction for high-performance, high throughput, big data, and streaming applications, as a case study for evaluating the DSR activities. For this purpose, we analyze the research process and artifacts produced during the design and evaluation of the pilot-abstraction. We find DSR provides a concise framework for iteratively designing and evaluating systems. Finally, we capture our experiences and formulate different lessons learned.

97 MATHEMATICS AND COMPUTING↗

Retrieving fields from proton radiography without source profiles

Proton radiography is a technique in high-energy density science to diagnose magnetic and/or electric fields in a plasma by firing a proton beam and detecting its modulated intensity profile on a screen. Current approaches to retrieve the integrated field from the modulated intensity profile require the unmodulated beam intensity profile before the interaction, which is rarely available experimentally due to shot-to-shot variability. In this paper, we present a statistical method to retrieve the integrated field without needing to know the exact source profile. We apply our method to experimental data, showing the robustness of our approach. Furthermore, our proposed technique allows for the retrieval not only of the path-integrated fields, but also of the statistical properties of the fields.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Tropical root traits in response to global changes from 1984 to 2023

This dataset is a compilation of tropical root traits data in response to different global changes in tropical sites, considering 23.50N and S as latitudinal boundaries. The global changes considered are warming, drought, flooding, cyclones, nitrogen addition, CO2 fertilization, and fire. This dataset contains 266 root trait observations from 93 studies across 24 tropical countries. The full citation from where the data was taken from is provided in the dataset, as well as the global change, the ecosystem type, location, coordinates, the root traits measured, and the direction of their response after the global change. Additional information such as the duration of the experiment, the intensity of the global change, the soil layers from where the roots were collected, the root orders, and the type of experiment are also shown. We obtained this dataset by performing a systematic literature review on Web of Science using standardized keywords in English, Spanish, and Portuguese (Yaffar, Lugli et al. in press).

54 ENVIRONMENTAL SCIENCES↗

Green Ocean Amazon 2014/15 Manaus Pollution Study Field Campaign Report

This work was part of the larger Green Ocean Amazon 2014/15 (GOAmazon 2014/15) experiment, which extended through the wet and dry seasons from January 2014 through December 2015 and which took place around the urban region of Manaus, Brazil in central Amazonia. This work was conducted as part of this experiment at the main U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) Climate Research Facility ground research site “T3” circa 100 km west of Manaus during two intensive operational periods, “IOP1” and “IOP2” (February 1 to March 31, 2014, and August 15 to October 15, 2014, respectively). Funding for this work was provided by the National Science Foundation AGS 1321987/1628491. The GoAmazon experiment was designed to enable the study of how aerosols and surface fluxes influence cloud cycles under clean conditions, as well as how aerosol and cloud life cycles, including cloud-aerosol-precipitation interactions, are influenced by pollutant outflow from a tropical megacity. These observations provide a data set vital to constrain tropical rain forest model parameterizations for organic aerosols, cloud and convection schemes, and terrestrial vegetation components and how these are perturbed by pollution. Research objectives specific to this work and the T3 ground site included studies of how outflow of pollution from Manaus modulated the photochemically driven conversion of emitted precursors to aerosol precursors and aerosol.

54 ENVIRONMENTAL SCIENCES↗

CERES and the S'COOL Project

The first Clouds and the Earth's Radiant Energy System (CERES) instrument will be launched on the Tropical Rainfall Measuring Mission (TRMM) spacecraft from a Japanese launch site in November 1997. This instrument is a follow-on to the Earth Radiation Budget Experiment (ERBE) begun in the 1980's. The instrument will measure the radiation budget - incoming and outgoing radiant energy - of the Earth. It will establish a baseline and look for climatic trends. The major feature of interest is clouds, which play a very strong role in regulating our climate. CERES will identify clear and cloudy regions and determine cloud physical and microphysical properties using imager data from a companion instrument. Validation efforts for the remote sensing algorithms will be intensive. As one component of the validation, the S'COOL (Students' Cloud Observations On-Line) project will involve school children from around the globe in making ground truth measurements at the time of a CERES overpass. Their observations will be collected at the NASA Langley Distributed Active Archive Center (DAAC) and made available over the Internet for educational purposes as well as for use by the CERES Science Team in validation efforts. Pilot testing of the S'COOL project began in January 1997 with two local schools in Southeastern Virginia and one remote site in Montana. This experience is helping guide the development of the S'COOL project. National testing is planned for April 1997, international testing for July 1997, and global testing for October 1997. In 1998, when the CERES instrument is operational, a global observer network should be in place providing useful information to the scientists and learning opportunities to the students.

Chambers, Lin H.↗

UAS Applications for Hurricane Science, Hurrican and Severe Storm Sentinel (HS3)

Earth Science Industry Update: UAS Applications for Hurricane Science Unmanned systems can significantly transform hurricane observations and monitoring, improving our knowledge about and ability to forecast storm formation, track, and intensity change. NASA's use of the Global Hawk has demonstrated the scientific value of this platform and provided a proof-of-concept for operational applications. However, science flight operations face several challenges and constraints. In this session, learn about how NASA adapted the Global Hawk to do science; How NASA conducts its hurricane missions, and some of the challenges and constraints they face; Science results from NASA's recent hurricane field campaigns using the Global Hawk. How assimilation of dropsonde and radar data into weather prediction models may improve forecast accuracy; Other Earth science problems that could be addressed with Global Hawks.

Hurricane Science↗

Development of an Enhanced Radiation Physics Toolset for Modeling Spectral and Imaging Signatures in the Warm Dense Matter Experiments

Radiative and atomic processes in plasmas play a critical role in a wide variety of high energy density laboratory plasma (HEDLP) experiments. The emission, absorption, and transport of radiation can strongly affect the overall energetics and evolution of such plasmas. In addition, radiation-based diagnostics – including imaging, spectroscopy, and absolute flux measurements – are widely used to determine key features of HEDLPs. To advance our understanding of HEDLP science, it is vital to have high-fidelity computational physics tools that have well-tested radiation physics modeling, and that are readily accessible to researchers in the HEDLP community. Simulations play an extremely important role for planning and designing the experiments, as well as for post-experiment data analysis. Prism Computational Sciences develops software that is used by National Laboratories and universities (including five members of LaserNetUS network). Prominent examples of such research efforts include z-pinch and short-pulse laser experiments designed to study the basic physics of photoionized plasmas and photoionization fronts, as well as their application to astrophysical plasmas. The main effort was dedicated to the development of non-equilibrium equation-of-state (EOS) models within the HELIOS-CR code, a hydrodynamics code with inline collisional-radiative atomic kinetics. Gas cell experiments on Z and Omega demonstrated the importance of non-equilibrium effects on atomic kinetics in photoionized plasmas. Recent proof-of-principle experiments on Omega EP confirmed the advantages of using a short-pulse laser to create an intense radiation drive, leading to additional experiments being proposed. Photoionization front experiments at LLE also emphasizes the importance of radiation and atomic physics. In both studies, HELIOS-CR simulations played a crucial role in computing non-equilibrium opacities and ionization distributions. A newly developed non-LTE EOS model will help addressing possible non-equilibrium effects, on for example specific heat, and their influence in plasma evolution. Prism also implemented support for open-source atomic data generated by the Flexible Atomic Code. This allows researchers to generate custom atomic tables and use them within the complex framework of simulation tools developed by Prism. The ability to use open-source atomic data would be extremely valuable for hydrodynamics and spectroscopic simulations that include high-Z materials, e.g., picosecond x-ray pulse generation experiments. Support for new atomic structures was fully implemented, and the data can be used by all simulation tools developed at Prism: radiation-hydrodynamics, imaging and spectroscopy, EOS and opacity. The development resulted in a significant fidelity enhancement to the simulations tools developed by Prism that are currently used in other cutting-edge experiments including: opacity measurement experiments performed to both understand the basic radiative and atomic properties of plasmas as well as provide data for more accurately modeling the internal structure of the Sun and other stars, high-intensity short-pulse laser experiments performed to develop short-wavelength light sources for use as backlighters and to investigate fast ignition concepts for inertial fusion energy; capsule implosion experiments designed to develop inertial fusion as an energy source, etc.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Model development and data uncertainty integration

The effect of data uncertainties is discussed, with the epithermal neutron multiplicity counter as an illustrative example. Simulation using MCNP6, cross section perturbations and correlations are addressed, along with the effect of the 240 Pu spontaneous fission neutron spectrum, the effect of P(ν) for 240 Pu spontaneous fission, and the effect of spontaneous fission and (α,n) intensity. The effect of nuclear data is the product of the initial uncertainty and the sensitivity -- both need to be estimated. In conclusion, a multi-parameter variation method has been demonstrated, the most significant parameters are the basic emission rates of spontaneous fission and (α,n) processes, and uncertainties and important data depend on the analysis technique chosen.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Understanding heterogeneity in Genesis diamond-like carbon film using SIMS analysis of implants

An amorphous diamond-like carbon film deposited on silicon made at Sandia National Laboratory by pulsed laser deposition was one of several solar wind (SW) collectors used by the Genesis Mission (NASA Discovery Class Mission #5). The film was ~1 μm thick, amorphous, anhydrous, and had a high ratio of sp 3 –sp 2 bonds (>50%). For 27 months of exposure to space at the first We passively irradiated lagrange point, the collectors, with SW (H fluence ~2 × 10 16 ions cm -2 ; He fluence ~8 × 10 14 ions cm -2 ). The radiation damage caused by the implanted H ions peaked at 12–14 nm below the surface of the film and that of He about 20–23 nm. To enable quantitative measurement of the SW fluences by secondary ion mass spectroscopy, minor isotopes of Mg ( 25 Mg and 26 Mg) were commercially implanted into flight-spare collectors at 75 keV and a fluence of 1 × 10 14 ions cm -2 . Furthermore, the shapes of analytical depth profiles, the rate at which the profiles were sputtered by a given beam current, and the intensity of ion yields are used to characterize the structure of the material in small areas (~200 × 200 ± 50 μm). Data were consistent with the hypothesis that minor structural changes in the film were induced by SW exposure.

36 MATERIALS SCIENCE↗

CDB-AP: An application for coincidence Doppler broadening spectroscopy analysis

Coincidence Doppler Broadening (CDB) Positron Annihilation Spectroscopy (PAS) is a material analysis technique that can be used to non-destructively measure characteristics of structural defects in samples. Analyzing and comparing large datasets obtained using this technique, however, can be complicated and time intensive. The Coincidence Doppler Broadening Analysis Program (CDB-AP) is a graphical user interface that facilitates rapid analysis of many data files while using transparent processes. It is already used in three laboratories at Idaho National Laboratory and can be used in laboratories worldwide.

36 MATERIALS SCIENCE↗

Determination of the absorption and scattering coefficients of highly scattering media from the experimentally established temporal distributions of laser pulse intensities

The passage of laser radiation through a scattering medium is studied experimentally. A method of determining the optical characteristics of a scattering media is proposed. The method is based on the measurements of time distributions of the intensity of ultrashort laser pulses for two layer thicknesses of the medium to be studied. The measurements are carried out with the use of a single-photon counting system. The proposed method is used to determine the absorption and scattering coefficients of a model medium from the experimental data.

36 MATERIALS SCIENCE↗

Leveraging Computational Storage Devices in Campaign Storage [Slides]

Computational storage provides new ways of accelerating data-intensive applications. In-drive data management schemes matter (O_DIRECT, clustered index). Layer violation: “cheating” one filesystem may be possible; cheating multiple layers of filesystems is hard (FS internal load balancing, fail over, compression, concurrency control). The future directions include block-based acceleration to object-based acceleration.

97 MATHEMATICS AND COMPUTING↗

Sequential Inference of Hospitalization Electronic Health Records Using Probabilistic Models

In the dynamic hospital setting, decision support can be a valuable tool for improving patient outcomes. Data-driven inference of future outcomes is challenging in this dynamic setting, where long sequences such as laboratory tests and medications are updated frequently. This is due in part to heterogeneity of data types and mixed-sequence types contained in variable length sequences. In this work we design a probabilistic unsupervised model for multiple arbitrary-length sequences contained in hospitalization Electronic Health Record (EHR) data. The model uses a latent variable structure and captures complex relationships between medications, diagnoses, laboratory tests, neurological assessments, and medications. It can be trained on original data, without requiring any lossy transformations or time binning. Inference algorithms are derived that use partial data to infer properties of the complete sequences, including their length and presence of specific values. We train this model on data from subjects receiving medical care in the Kaiser Permanente Northern California integrated healthcare delivery system. The results are evaluated against held-out data for predicting the length of sequences and presence of Intensive Care Unit (ICU) in hospitalization bed sequences. Our method outperforms a baseline approach, showing that in these experiments the trained model captures information in the sequences that is informative of their future values.

97 MATHEMATICS AND COMPUTING↗

An effective QWBA/UHPLC-MS/tissue punch approach: solving a pharmacokinetic issue via quantitative Met-ID

Methods to provide absolute quantitation of the administered drug and corresponding metabolites in tissue in a spatially resolved manner is a challenging but much needed necessity in pharmaceutical research. Quantitative whole-body autoradiography (QWBA) after a single-dose intravenous (3 mg/kg) and extravascular (30 mg/kg) administrations of an in vitro metabolically stable test compound (structure not reported here) indicated quick tissue distribution and excretion. Good bioavailability and short in vivo half-lives were determined formerly for the same test compound. For closing gaps in the understanding of pharmacokinetic data and in vitro results, radioactive hot spots on whole-body tissue sections had been profiled. Punches from selected tissue regions containing high radioactivity in the tissue sections previously analyzed by QWBA were extracted by a highly organic solvent and analyzed without any consecutive sample preparation step, applying ultra high performance liquid chromatography-mass spectrometry (UHPLC-MS) and off-line radioanalysis to maximize signal levels for metabolite identification and profiling. The analysis revealed that the test compound was metabolized intensively by phase I reactions in vivo and the metabolites formed were excreted in bile and in urine. The predominant metabolites showed abundant signal intensities both by MS and by radioanalysis but the MS signal intensities generally underestimated the real abundances of metabolites relative to the unchanged drug. In this work we illustrate that maximizing the sensitivity of tissue punch radioanalysis and the combination with UHPLC-MS leads to a better insight of pharmacokinetic processes by providing quantitative data with high molecular selectivity.

60 APPLIED LIFE SCIENCES↗

Theoretical and numerical analyses of a slit-masked chicane for modulated bunch generation

Density modulations on electron beams can improve machine performance of beam-driven accelerators and FELs with resonance beam-wave coupling. The beam modulation is studied with a masked chicane by the analytic model and simulations with the beam parameters of the Fermilab Accelerator Science and Technology (FAST) facility. With the chicane design parameters (bending angle of 18o, bending radius of 0.95 m and R 56 ~ –0.19 m) and a nominal beam of 3 ps bunch length, the analytic model showed that a slit-mask with slit period 900 μ m and aperture width 300 μ m induces a modulation of bunch-to-bunch spacing ~ 100 μ m to the bunch with 2.4% correlated energy spread. With the designed slit mask and a 3 ps bunch, particle-in-cell (PIC) simulations, including nonlinear energy distributions, space charge force, and coherent synchrotron radiation (CSR) effect, also result in beam modulation with bunch-to-bunch distance around 100 μ m and a corresponding modulation frequency of 3 THz. The beam modulation has been extensively examined with three different beam conditions, 2.25 ps (0.25 nC), 3.25 ps (1 nC), and 4.75 ps (3.2 nC), by tracking code Elegant. The simulation analysis indicates that the sliced beam by the slit-mask with 3 ~ 6% correlated energy spread has modulation lengths about 187 μ m (0.25 nC), 270 μ m (1 nC) and 325 μ m (3.2 nC). As a result, the theoretical and numerical data proved the capability of the designed masked chicane in producing modulated bunch train with micro-bunch length around 100 fs.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Sky Residual Correction

The near-infrared is populated by numerous emission lines radiated from the Earth’s atmosphere, and these emission lines are often several orders of magnitude brighter in intensity than the typical astrophysical science target. The subtraction of these emission lines, sky subtraction, can create large systematic errors in ground-based astronomical spectra effectively limiting the number of usable resolution elements. A more effective sky subtraction, and the reduction of the systematic errors due to the sky subtraction process, is a major hurdle which ground-based astronomy must overcome to increase the amount of usable spectrum, and to be able to observe fainter scientific targets. Large high-quality data sets such as the Sloan Digital Sky Survey (SDSS) in themselves present opportunities for a reduction of the systematic sky subtraction errors through self-calibration. The sky residual correction method of Wild and Hewett is one such self-calibration technique which uses principal component analysis to reduce the systematic sky residual errors present in SDSS spectra. We apply sky residual corrections to the SDSS, Baryon Oscillation Spectroscopic Survey, and Apache Point Observatory Galactic Evolution Experiment data sets to optimize the number of subtraction components, and to quantify the reduction of the systematic errors in the science spectra. Finally as a proof of concept we use the sky-residual-corrected SDSS luminous red galaxy spectra to search for gravitationally lensed emission line Galaxies.

79 ASTRONOMY AND ASTROPHYSICS↗

Reciprocal Space Mapping of Macromolecular Crystals in the Home Laboratory

Reciprocal space mapping techniques are used widely by the materials science community to provide physical information about their crystal samples. We have used similar methods at synchrotron sources to look at the quality of macromolecular crystals produced both on the ground and under microgravity conditions. The limited nature of synchrotron time has led us to explore the use of a high resolution materials research diffractometer to perform similar measurements in the home laboratory. Although the available intensity is much reduced due to the beam conditioning necessary for high reciprocal space resolution, lower resolution data can be collected in the same detail as the synchrotron source. Experiments can be optimized at home to make most benefit from the synchrotron time available. Preliminary results including information on the mosaicity and the internal strains from reciprocal space maps will be presented.

Snell, Edward H.↗