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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 55 records · Page 3

Uncovering heterogeneous intercommunity disease transmission from neutral allele frequency time series

The COVID-19 pandemic has underscored the need for accurate epidemic forecasting to predict pathogen spread, evolution, and evaluate intervention strategies. Forecast reliability hinges on detailed knowledge of disease transmission across population segments, which may be inferred from contact surveys or mobility data. However, these indirect approaches make it difficult to estimate rare transmissions between socially or geographically distant communities. We show that the steep ramp-up of genome sequencing surveillance during the pandemic can be leveraged to directly identify transmission patterns between geographically defined communities. Our approach uses a hidden Markov model to infer the fraction of infections a community imports from others based on how rapidly allele frequencies in the focal community converge to those in the donor communities. Applying this method to SARS-CoV-2 sequencing data from England and the United States, we uncover networks of intercommunity transmission that reflect geographical relationships while exposing significant long-range interactions. The scaling of importation rate with distance is consistent across both countries, yet weaker than expected based on mobility data, highlighting limitations of indirect inference. We show that transmission patterns can change between waves of variants of concern and analyze how the inferred heterogeneity in intercommunity transmission impacts evolutionary forecasts. While applied here to geographically defined communities, our approach could be applied to those defined by other traits (e.g., age, socioeconomic status), provided time-series data can be stratified accordingly. Overall, our study highlights population genomic time series data as a crucial record of epidemiological interactions, which can be deciphered using tree-free inference methods.

Okada, Takashi [Department of Physics; University

Synthesis and investigation into explosive sensitivity for a series of new picramide explosives

Tailoring the molecular properties that govern energetic material sensitivity is essential to improve safety and help develop new energetic materials. Despite this need, understanding the complex chemistry and physics of explosive initiation and propagation is still a challenge. Recent work by our group has reinforced the view that explosive sensitivity under sub-shock conditions is connected to the strength of the weakest covalent bond in the molecule, that is, its “trigger linkage.” These correlations have been observed with different classes of energetic molecules and indicate that “trigger linkage” bond breaking, and heat of explosion are good indicators for the sensitivity trends. Herein we report the synthesis of aliphatic energetic materials with ethane, propane and neopentane backbones. Experimental and computational studies show that the trigger linkage model, based on results from quantum molecular dynamics simulations, correctly predicts trends observed in the impact sensitivity of the molecules. However, while the model predicts the impact sensitivities of the ethane series, the neopentane series has higher impact sensitivities than predicted, which is presumably influenced by crystal packing effects.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH

The Need for a New LLNL Pulsed Sphere Neutron Leakage Spectra Series

Here, it is shown that spectra measured as part of the Lawrence Livermore National Laboratory Pulsed Sphere (LPS) program offer decisive information to locate formatting or physics issues in nuclear data of key interest for fusion reactor simulations. However, experiments from this measurement series are not benchmarks. For instance, their uncertainties are incomplete. There are also many open questions—e.g., on the setup, the detector response, and whether LPS are accurately modeled—that cannot be answered anymore given the limited documentation and that many of the experimenters are no longer actively working. This limited knowledge has implications when one tries to adjust nuclear data to LPS spectra. Usually, one adjusts to benchmarks representing an application with the hope to get more precise nuclear data for the application of interest where differential data might be scarce and/or to reduce nuclear data uncertainties in the application simulations. However, it is demonstrated that adjustment with LPS spectra without accounting for missing uncertainties and modeling potential biases in the experimental data leads to adjusted data that are highly unphysical. That means adjusted data differ significantly from evaluated data based on information from differential experiments; also, application quantities predicted with the adjusted data deviate distinctly from experimental ones. While we can approximate our limited knowledge on these experiments with Gaussian processes in the adjustment process, this modeling of bias is arbitrary rather than based on a physics explanation, calling into doubt the validity of resulting adjusted data. Thus, we discuss here the need for a new measurement series, learning from the strengths and weaknesses of the LPS program, to yield decisive and well-benchmarked integral experiments to support fusion reactor research.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS

Time-series elemental imaging reveals CAX-dependent redistribution patterns for anoxia recovery

Flooding-induced oxygen deprivation (anoxia) is a challenge to plant survival, necessitating adaptive mechanisms for recovery. This study investigated elemental redistribution during anoxia recovery using time-series elemental imaging to show changes in nutrient distribution. Focusing on the role of Cation/H + Exchangers (CAXs) in Arabidopsis thaliana, we show how mutants deficient in specific CAX transporters (cax1 and the cax1-4 quadruple mutant) respond to anoxia and metal stress. Mutants showed reduced lipid peroxidation and increased expression of flood-tolerance proteins during recovery. X-ray fluorescence microscopy and laser ablation–inductively coupled plasma mass spectrometry were used to show elemental redistribution over time. In wild-type plants (Col-0), post-anoxia elemental distribution resembled the elemental distribution of CAX mutants under normoxic conditions, suggesting that CAX-mediated elemental distribution before anoxia enables faster recovery post-anoxia, rather than affecting remobilization post-anoxia. Although CAX mutants had altered tolerance to excess manganese and copper, leaf metal distribution during metal stress was not altered. Here, these findings introduce the potential utility of time-series elemental imaging to show stress-response phenotypes and the importance of elemental distribution to recovery after anoxia. The novelty of this work lies in resolving spatial distribution patterns in a non-static system to gain insight into mechanisms of stress resilience in plants.

36 MATERIALS SCIENCE

A comprehensive framework to assess elemental mercury in the Department of Energy: A time series analysis

Objective: This study investigated whether seasonal categories affect airborne mercury concentrations in the U.S. Department of Energy operations. Methods: We conducted an initial assessment of the general variability of airborne elemental mercury time-weighted average (TWA) samples. Then, we performed a two-component time series analysis to determine whether long-term, cyclical temperature change patterns affect mercury concentrations. Results: Both ARIMA time series models demonstrated stationary, non-random means (χ² = 83.8, p < 0.001) and standard deviation (χ² = 55.8, p < 0.001) of mercury concentrations. Here, our results indicate that the seasonal factors did not influence mercury concentration. Conclusions: Our results demonstrate that mercury concentrations primarily emanate from operational activities, work practices, and/or transient environmental conditions rather than seasonal fluctuations.

Cannady, Ryan T. [Oak Ridge National Laboratory (O

Loop series expansions for tensor networks

Belief propagation (BP) can be a useful tool to approximately contract a tensor network, provided that the contributions from any closed loops in the network are sufficiently weak. In this article, we describe how a loop series expansion can be applied to systematically improve the accuracy of a BP approximation to a tensor network contraction, in principle converging arbitrarily close to the exact result. More generally, our result provides a framework for expanding a tensor network as a sum of component networks in a hierarchy of increasing complexity. We benchmark this proposal for the contraction of infinite projected entangled pair states, either representing the ground state of an Affleck-Kennedy-Lieb-Tasaki (AKLT) model or with randomly defined tensors, where it is shown to improve in accuracy over standard BP by several orders of magnitude while incurring only a minor increase in computational cost. These results indicate that the proposed series expansions could be a useful tool to accurately evaluate tensor networks in cases that otherwise exceed the limits of established contraction routines.

Evenbly, Glen [AWS Center for Quantum Computing, P

Aboveground Biomass Estimation Using NISAR Simulated ALOS-2 Time Series Data

Aboveground biomass (AGB) is a critical parameter to better understand the global carbon cycle and to develop sustainable forest management. However, a large uncertainty prevails. L-band SAR data have demonstrated strong potential to accurately retrieve AGB over low-biomass regions (<100 Mg ha-1). The upcoming NASA-ISRO Synthetic Aperture Radar mission will collect data at L- and S-band over earth’s landmass with a repeat period of 12 days, allowing us to have ample data for monitoring biomass and its dynamics. One of the key science requirements of the mission is to produce annual AGB maps at 1-ha resolution with RMS accuracy of 20 Mg/ha for 80 percentage of area over low-biomass regions in Calibration/Validation sites. The NISAR biomass algorithm will generate AGB maps based on the parameterization of semi-empirical model along with NISAR time-series dual pol data (HH and HV). To calibrate and validate the model for mission requirements, the mission will use reference estimates of AGB produced from ground inventory plots and airborne LiDAR data collected over selected sites distributed across different global ecoregions. This paper presents the initial results of the calibration/validation of the NISAR AGB retrieval algorithm over the Lenoir Landing (LENO), Alabama, USA site using NISAR simulated ALOS-2 time series data. Five multi-temporal dual-pol HH and HV NISAR Simulated ALOS 2 data collections were used as input to assess the performance of the model. The model AGB retrieval results shows that the NISAR model was able to achieve RMS accuracy within 20 Mg/ha.

Ramachandran, Naveen [Jet Propulsion Laboratory, C

Multivariate Time Series Intermittent Fault Detectionin Controller Area Network CAN

Fault detection in Controller Area Network (CAN) systems is crucial for ensuring the reliability and safety of automotive and industrial applications. This study investigates and compares the effectiveness of time series classification models for supervised fault detection in CAN data. This repository contains the code and data for our benchmarking experiment aimed at detecting intermittent faults in automotive Controller Area Network (CAN) data. The goal of this project is to compare various machine learning (ML) and deep learning (DL) models using different Time Series Cross-Validation (TSCV) techniques to evaluate their effectiveness in a streaming environment for fault detection.

Hespeler, Steven [Oak Ridge National Laboratory (O

Extraction and Analysis of Time Series Data from Building Automation Systems Using Large Language Models

Semantic schemas like Haystack 4, Brick and ASHRAE standard 223 enable the structured, standardized, and machine-readable representation of building data, facilitating interoperability, data integration, and advanced analytics. However, extracting information from these models requires specialized expertise in SPARQL and other programming languages, skills that are not commonly found among building professionals. Recent advancements in Large Language Models (LLMs), such as ChatGPT, enable the construction of queries using natural language, making it easier for individuals to interact with these systems in a manner that resembles everyday speech. However, these methods have not yet been tested on building semantic ontologies. This paper introduces a novel workflow and tool for enabling users to ask questions about a specific building's data, using natural language and receive answers automatically generated by GPT-4o. Our approach integrates semantic ontologies with advanced LLM capabilities to automate three critical steps: (1) generating SPARQL queries to retrieve time series references from ontological models, (2) extracting the corresponding time series data from the Building Automation System, and (3) performing computations and visualizations tailored to the user's query. The proposed method simplifies access to BAS data, allowing both domain experts and non-specialists to conduct sophisticated analyses without needing extensive technical knowledge of semantic web technologies. By demonstrating this pipeline, we facilitate more accessible and scalable data-driven decision-making in building operations and management.

Mulayim, Ozan Baris

Elastic Changepoint Detection for Globally-indexed Functional Time Series Data with Climate Applications

Changepoint detection is a vital tool in the application of climate data analysis. Numerous types of climate observation data are most properly represented by functional time series, implying a need for accurate changepoint detection methods applicable to functional time series data. Such data taken at a global scale often contain both spatial heterogeneity and dependence as well as phase (time) misalignment. In this report, we present methods which can detect spatially-dependent changepoints while allowing different estimates of change time and change strength depending on location. Additionally, we provide extensions to this spatially-predicted model which controls for phase variability among observations. Our methods provide the ability to detect a single change, or control for epidemic changes (where a “return-to-normal” change is more likely to be detected than the initial change). We showcase results analyzing the June 1991 eruption of Mt. Pinatubo, where our methods demonstrate the ability to accurately detect both single and epidemic changepoints even in the presence of strong seasonal variability. We find that our spatially-predicted model improves the detection of relevant changepoints versus methods which do not take spatial information into account, and we find that controlling for phase variability helps to control the false discovery rate during the detection process.

54 ENVIRONMENTAL SCIENCES

Microbial Design for a Developing Bioeconomy: Frontier Science for the Bioeconomy Workshop Series

The Microbial Design for a Developing Bioeconomy workshop report is one of a four-part Frontier Science for the Bioeconomy series hosted by the DOE Biological and Environmental Research program’s Biological Systems Science Division. The series defines frontiers of plant science, agriculture, synthetic biology, biobased materials, and environmental microbiome science that will unlock the promise of an innovative, resilient U.S. bioeconomy.

59 BASIC BIOLOGICAL SCIENCES

Technical Basis SAVY-4000® Series, 5.5G Container (Rev. 1)

The 5.5 Gallon (5.5G) SAVY-4000® nuclear material storage container is the latest in the SAVY-4000® series. The 5.5G is similar to that of a 1or 2Qt container in functionality with the exception of a larger volume deep drawn and spun form body achieved through increases in the depth and diameter of the container. Here, a technical basis using engineering equivalency analysis, calculation, and test data is presented to establish that the 5.5G SAVY-4000® Container is a DOE Manual 441.1-1 compliant container at a drop height of 9 feet (rather than the typical 12 ft of the other SAVY-4000® containers) and that a twenty-five year design life (as with the currently approved SAVY-4000® series) is justified.

99 GENERAL AND MISCELLANEOUS

Efficient Hamiltonian encoding algorithms for extracting quantum control mechanism as interfering pathway amplitudes in the Dyson series

Hamiltonian encoding is a methodology for revealing the mechanism behind the dynamics governing controlled quantum systems. In this paper, following Mitra and Rabitz \cite{abhra_1}, we define mechanism via pathways of eigenstates that describe the evolution of the system, where each pathway is associated with a complex-valued amplitude corresponding to a term in the Dyson series. The evolution of the system is determined by the constructive and destructive interference of these pathway amplitudes. Pathways with similar attributes can be grouped together into pathway classes. The amplitudes of pathway classes are computed by modulating the Hamiltonian matrix elements and decoding the subsequent evolution of the system rather than by direct computation of the individual terms in the Dyson series. The original implementation of Hamiltonian encoding was computationally intensive and became prohibitively expensive in large quantum systems. This paper presents two new encoding algorithms that calculate the amplitudes of pathway classes by using techniques from graph theory and algebraic topology to exploit patterns in the set of allowed transitions, greatly reducing the number of matrix elements that need to be modulated. These new algorithms provide an exponential decrease in both computation time and memory utilization with respect to the Hilbert space dimension of the system. To demonstrate the use of these techniques, they are applied to two illustrative state-to-state transition problems.

Abrams, Erez [Princeton University, Massachusetts

Time Series Foundation Models and Deep Learning Architectures for Earthquake Temporal and Spatial Nowcasting

Advancing the capabilities of earthquake nowcasting, the real-time forecasting of seismic activities, remains crucial for reducing casualties. This multifaceted challenge has recently gained attention within the deep learning domain, facilitated by the availability of extensive earthquake datasets. Despite significant advancements, the existing literature on earthquake nowcasting lacks comprehensive evaluations of pre-trained foundation models and modern deep learning architectures; each focuses on a different aspect of data, such as spatial relationships, temporal patterns, and multi-scale dependencies. This paper addresses the mentioned gap by analyzing different architectures and introducing two innovative approaches called Multi Foundation Quake and GNNCoder. We formulate earthquake nowcasting as a time series forecasting problem for the next 14 days within 0.1-degree spatial bins in Southern California. Earthquake time series are generated using the logarithm energy released by quakes, spanning 1986 to 2024. Our comprehensive evaluations demonstrate that our introduced models outperform other custom architectures by effectively capturing temporal-spatial relationships inherent in seismic data. The performance of existing foundation models varies significantly based on the pre-training datasets, emphasizing the need for careful dataset selection. However, we introduce a novel method, Multi Foundation Quake, that achieves the best overall performance by combining a bespoke pattern with Foundation model results handled as auxiliary streams.

97 MATHEMATICS AND COMPUTING

Extraction and Analysis of Time Series Data from Building Automation Systems Using Large Language Models

Semantic schemas like Haystack 4, Brick and ASHRAE standard 223 enable the structured, standardized, and machine-readable representation of building data, facilitating interoperability, data integration, and advanced analytics. However, extracting information from these models requires specialized expertise in SPARQL and other programming languages, skills that are not commonly found among building professionals. Recent advancements in Large Language Models (LLMs), such as ChatGPT, enable the construction of queries using natural language, making it easier for individuals to interact with these systems in a manner that resembles everyday speech. However, these methods have not yet been tested on building semantic ontologies. This paper introduces a novel workflow and tool for enabling users to ask questions about a specific building's data, using natural language and receive answers automatically generated by GPT-4o. Our approach integrates semantic ontologies with advanced LLM capabilities to automate three critical steps: (1) generating SPARQL queries to retrieve time series references from ontological models, (2) extracting the corresponding time series data from the Building Automation System, and (3) performing computations and visualizations tailored to the user's query. The proposed method simplifies access to BAS data, allowing both domain experts and non-specialists to conduct sophisticated analyses without needing extensive technical knowledge of semantic web technologies. By demonstrating this pipeline, we facilitate more accessible and scalable data-driven decision-making in building operations and management.

Mulayim, Ozan Baris

Universal Fourier Attack for Time Series

A wide variety of adversarial attacks have been proposed and explored using image and audio data. These attacks are notoriously easy to generate digitally when the attacker can directly manipulate the input to a model, but are much more difficult to implement in the real world. In this paper we present a universal, time invariant attack for general time series data such that the attack has a frequency spectrum primarily composed of the frequencies present in the original data. The universality of the attack makes it fast and easy to implement as no computation is required to add it to an input, while time invariance is useful for real world deployment. Additionally, the frequency constraint ensures the attack can withstand filtering defenses. We demonstrate the effectiveness of the attack on two different classification tasks through both digital and real world experiments, and show that the attack is robust against common transform-and-compare defense pipelines.

97 MATHEMATICS AND COMPUTING

Time-series RNA metabarcoding of the active Populus tremuloides root microbiome reveals hidden temporal dynamics and dormant core members

The rhizosphere is a critical interface between plant roots and soil, harboring diverse microbial communities that are essential to plant and ecosystem health. Although these communities exhibit stark temporal dynamics, their dormancy/activity transitions remain poorly understood. Such transitions may enable microbes to rapidly adjust functional contributions faster than community turnover alone would allow. Here, we used RNA metabarcoding to characterize the active fraction of microbial communities on the roots of quaking aspen (Populus tremuloides) in a time-series study across a natural environmental gradient. We explore cryptic temporal microbial community dynamics of rhizosphere communities at the ecosystem scale. The active rhizosphere bacterial and fungal communities were more temporally dynamic than total communities, while total communities exhibited a stronger response to site-specific conditions. Notably, some core microbiome members were often inactive, yielding a smaller “active core” subset. The fungal endophyte Hyaloscypha finlandica was the only microbe that was both present and active in all plots across all timepoints. Soil temperature strongly influenced both total and active community composition, with the fungal class Eurotiomycetes showing a temperature-dependent seasonal decline in abundance. Together, these results reveal that modulation of microbial activity levels is a key mechanism by which the plant root holobiont responds to environmental variation, and that even dominant symbionts may frequently persist in dormancy within the rhizosphere.

Community Structure and Diversity

Transformers and Long Short-Term Memory Transfer Learning for GenIV Reactor Temperature Time Series Forecasting

Automated monitoring of the coolant temperature can enable autonomous operation of generation IV reactors (GenIV), thus reducing their operating and maintenance costs. Automation can be accomplished with machine learning (ML) models trained on historical sensor data. However, the performance of ML usually depends on the availability of large amount of training data, which is difficult to obtain for GenIV, as this technology is still under development. We propose the use of transfer learning (TL), which involves utilizing knowledge across different domains, to compensate for this lack of training data. TL can be used to create pre-trained ML models with data from small-scale research facilities, which can then be fine-tuned to monitor GenIV reactors. In this work, we develop pre-trained Transformer and long short-term memory (LSTM) networks by training them on temperature measurements from thermal hydraulic flow loops operating with water and Galinstan fluids at room temperature at Argonne National Laboratory. The pre-trained models are then fine-tuned and re-trained with minimal additional data to perform predictions of the time series of high temperature measurements obtained from the Engineering Test Unit (ETU) at Kairos Power. The performance of the LSTM and Transformer networks is investigated by varying the size of the lookback window and forecast horizon. The results of this study show that LSTM networks have lower prediction errors than Transformers, but LSTM errors increase more rapidly with increasing lookback window size and forecast horizon compared to the Transformer errors.

LSTM