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Enabling pan-repository reanalysis for big data science of public metabolomics data

Public untargeted metabolomics data is a growing resource for metabolite and phenotype discovery; however, accessing and utilizing these data across repositories pose significant challenges. Therefore, here we develop pan-repository universal identifiers and harmonized cross-repository metadata. This ecosystem facilitates discovery by integrating diverse data sources from public repositories including MetaboLights, Metabolomics Workbench, and GNPS/MassIVE. Our approach simplified data handling and unlocks previously inaccessible reanalysis workflows, fostering unmatched research opportunities.

El Abiead, Yasin↗

Neural network based emulation of galaxy power spectrum covariances: A reanalysis of BOSS DR12 data

We train neural networks to quickly generate redshift-space galaxy power spectrum covariances from a given parameter set (cosmology and galaxy bias). This covariance emulator utilizes a combination of traditional fully connected network layers and transformer architecture to accurately predict covariance matrices for the high redshift, north galactic cap sample of the BOSS DR12 galaxy catalog. We run simulated likelihood analyses with emulated and brute-force computed covariances, and we quantify the network’s performance via two different metrics: (1) difference in Χ 2 and (2) likelihood contours for simulated BOSS DR 12 analyses. We find that the emulator returns excellent results over a large parameter range. We then use our emulator to perform a reanalysis of the BOSS HighZ NGC galaxy power spectrum, and find that varying covariance with cosmology along with the model vector produces Ω m = $0.27⁢6$$^{+0.013}_{–0.015}$, H 0 = 70.2 ± 1.9 km/s/Mpc, and σ 8 = $0.67⁢4$$^{+0.058}_{–0.077}$. These constraints represent an average 0.46⁢σ shift in best-fit values and a 5% increase in constraining power compared to fixing the covariance matrix (Ω m = 0.293 ± 0.017, H 0 = 70.3 ± 2.0 km/s/Mpc, σ 8 = $0.70⁢2$$^{+0.063}_{–0.075}$). As a result, this work demonstrates that emulators for more complex cosmological quantities than second-order statistics can be trained over a wide parameter range at sufficiently high accuracy to be implemented in realistic likelihood analyses.

79 ASTRONOMY AND ASTROPHYSICS↗

Climatology of Severe Local Storm Environments and Synoptic-Scale Features over North America in ERA5 Reanalysis and CAM6 Simulation

Severe local storm (SLS) activity is known to occur within specific thermodynamic and kinematic environments. These environments are commonly associated with key synoptic-scale features—including southerly Great Plains low-level jets, drylines, elevated mixed layers, and extratropical cyclones—that link the large-scale climate to SLS environments. This work analyzes spatiotemporal distributions of both extreme values of SLS environmental parameters and synoptic-scale features in the ERA5 reanalysis and in the Community Atmosphere Model, version 6 (CAM6), historical simulation during 1980–2014 over North America. Compared to radiosondes, ERA5 successfully reproduces SLS environments, with strong spatiotemporal correlations and low biases, especially over the Great Plains. Both ERA5 and CAM6 reproduce the climatology of SLS environments over the central United States as well as its strong seasonal and diurnal cycles. ERA5 and CAM6 also reproduce the climatological occurrence of the synoptic-scale features, with the distribution pattern similar to that of SLS environments. Compared to ERA5, CAM6 exhibits a high bias in convective available potential energy over the eastern United States primarily due to a high bias in surface moisture and, to a lesser extent, storm-relative helicity due to enhanced low-level winds. Additionally, composite analysis indicates consistent synoptic anomaly patterns favorable for significant SLS environments over much of the eastern half of the United States in both ERA5 and CAM6, though the pattern differs for the southeastern United States. Overall, our results indicate that both ERA5 and CAM6 are capable of reproducing SLS environments as well as the synoptic-scale features and transient events that generate them.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Land–Atmosphere Coupling at the U.S. Southern Great Plains: A Comparison on Local Convective Regimes between ARM Observations, Reanalysis, and Climate Model Simulations

Using the 9-yr warm-season observations at the Atmospheric Radiation Measurement Southern Great Plains site, in this work we assess the land–atmosphere (LA) coupling in the North American Regional Reanalysis (NARR) and two climate models: hindcasts with the Community Atmosphere Model version 5.1 by Cloud-Associated Parameterizations Testbed (CAM5-CAPT) and nudged runs with the Energy Exascale Earth System Model Atmosphere Model version 1 Regionally Refined Model (EAMv1-RRM). We focus on three local convective regimes and diagnose model behaviors using the local coupling metrics. NARR agrees well with observations except a slightly warmer and drier surface with higher downwelling shortwave radiation and lower evaporative fraction. On clear-sky days, it shows warmer and drier early-morning conditions in both models with significant underestimates in surface evaporation by EAMv1-RRM. On the majority of the ARM-observed shallow cumulus days, there is no or little low-level clouds in either model. When captured in models, the simulated shallow cumulus shows much less cloud fraction and lower cloud bases than observed. On the days with late-afternoon deep convection, models tend to present a stable early-morning lower atmosphere more frequently than the observations, suggesting that the deep convection is triggered more often by elevated instabilities. Generally, CAM5-CAPT can reproduce the local LA coupling processes to some extent due to the constrained early-morning conditions and large-scale winds. EAMv1-RRM exhibits large precipitation deficits and warm and dry biases toward mid-to-late summers, which may be an amplification through a positive LA feedback among initial atmosphere and land states, convection triggering and large-scale circulations.

58 GEOSCIENCES↗

Subtropical Jet in Reanalysis Data from STJ_PV

Subtropical jet position from a new method for locating the subtropical jet, called the tropopause gradient method. It is based on the peak gradient in potential temperature along the dynamic tropopause. This data has the identified subtropical jet latitude, level, and intensity across four different reanalysis products (CFSR-2, ERA-Interim, JRA-55, and MERRA-2), at both daily and monthly output frequency.

58 GEOSCIENCES↗

Influence of Lake Ice Biases in Reanalysis Data on Downscaled Climate Simulations over the Great Lakes Region

This data package contains observation-based and model-simulated datasets (all provided in NetCDF format) for evaluating how wintertime lake-ice representation affects regional weather and climate over the Laurentian Great Lakes (freshwater lake ecosystem) during the high–ice-cover winter of 2009. The observational component includes: (1) Stage IV gridded precipitation at 4 km, hourly resolution for January–February 2009 over the Great Lakes region (radar–gauge multisensor precipitation analyses); (2) Great Lakes Surface Environmental Analysis (GLSEA) satellite-derived lake-ice coverage at 1.3 km, daily resolution for the 2009 winter months, providing ice coverage over Lakes Superior, Michigan, Huron, Erie, and Ontario; and (3) in situ measurements at the Standard Rock site on Lake Superior from the Great Lakes Evaporation Network (GLEN) at hourly resolution, including near-surface atmospheric variables and sensible and latent heat fluxes (air–lake exchange) at a fixed point location. The modeling component provides corresponding fields from two simulations, both archived at 4 km, hourly resolution: a standalone Weather Research Forecasting model (WRF) run driven by the European Centre for Medium-Range Weather Forecasts (ECMWF) Reanalysis 5 (ERA5), and a two-way coupled model using WRF and the Finite Volume Community Ocean Model (WRF-FVCOM, a 3-D hydrodynamic lake model). These outputs include variables relevant to air–lake interaction and lake-effect processes (e.g., near-surface temperature, humidity, wind, precipitation, and surface turbulent fluxes), enabling direct comparison with the observational datasets. Users can analyze and visualize these NetCDF files with common tools such as Python (e.g., xarray, netCDF4, numpy, pandas), NCO/CDO, Panoply, or ncview; NetCDF variables can also be converted to other formats (e.g., CSV, GeoTIFF) using these utilities.

EARTH SCIENCE > ATMOSPHERE > ATMOSPHERIC TEMPERATU↗

Dayflow: CONUS Daily Streamflow Reanalysis, Version 1 (V1)

Dayflow V1 is a historical streamflow reanalysis dataset reconstructed for a 36-year period (1980-2015). The dataset provides both daily and monthly scale streamflow information at about 2.7 million NHDPlusV2 stream reaches in the conterminous US (CONUS). Dayflow is the result of a nationally scalable modeling framework that integrates the simulated runoff from the Variable Infiltration Capacity (VIC) model with the Routing Application for Parallel computatIon of Discharge (RAPID) routing model. Two types of streamflow products, simulated streamflow with or without assimilation of historic US Geological Survey (USGS) streamflow observations, are provided in Dayflow V1. A comprehensive evaluation at 7,526 USGS National Water Information System (NWIS) gauges is performed for both types of streamflow products. The resulting key evaluation metrics are also included in the Dayflow V1 Dataset.

13 HYDRO ENERGY↗

Northern Hemisphere Extratropical Cyclone Activity in the Twentieth Century Reanalysis Version 3 (20CRv3) and Its Relationship with Continental Extreme Temperatures

In this study, we detect and track extratropical cyclones using 6-hourly mean sea level pressure data taken from the Twentieth Century Reanalysis version 3 (20CRv3) over the period 1951–2015 and compare them with those in the Interim and fifth generation of ECMWF reanalyses over the period 1979–2018. Three indices were employed to characterize cyclone activity, including cyclone count, cyclone intensity, and a cyclone activity index (CAI) that combines the count and intensity. The results show that the cyclone indices in the three datasets have comparable annual climatologies and seasonal evolution over the northern extratropical land and ocean in recent decades. Based on the cyclone indices over the period 1951–2010 in 80 ensemble members of 20CRv3, cyclone count and intensity are negatively correlated in winter and tend to be positively and weakly correlated in summer. The interannual CAI variability is dominated by the cyclone count variability. Regional mean cyclone activity can be well represented using the ensemble average cyclone index. We then examined the linkage of the cyclone activity in 20CRv3 and observed cold and warm extremes over Eurasia and North America over the period 1951–2010. In winter, the principal components of interannual cold and warm extreme anomalies are more correlated with the regional mean cyclone count index over Eurasia, while they are more correlated with the cyclone intensity index over North America. The temperature anomalies associated with the regional and ensemble mean cyclone count index explain about 10% (20%) of interannual cold (warm) extreme variances averaged over Eurasia. The temperature anomalies associated with the mean cyclone intensity explain about 10% of interannual cold and warm extreme variances over North America. Large-scale atmospheric circulation anomalies in association with cyclone activity and the induced temperature advection drive temperature anomalies over Eurasia and North America. In summer, circulation and thermal advection anomalies associated with cyclone activity are weak over the two continents. Hence, that season’s relationship between cyclone activity and extreme temperature variability is weak.

20CRv3↗

Dead Fuel Moisture Content Reanalysis Dataset for California (2000–2020)

This study presents a novel reanalysis dataset of dead fuel moisture content (DFMC) across California from 2000 to 2020 at a 2 km resolution. Utilizing a data assimilation system that integrates a simplified time-lag fuel moisture model with 10-h fuel moisture observations from remote automated weather stations (RAWS) allowed predictions of 10-h fuel moisture content by our method with a mean absolute error of 0.03 g/g compared to the widely used Nelson model, with a mean absolute error prediction of 0.05 g/g. For context, the values of DFMC in California are commonly between 0.05 g/g and 0.30 g/g. The presented product provides gridded hourly moisture estimates for 1-h, 10-h, 100-h, and 1000-h fuels, essential for analyzing historical fire activity and understanding climatological trends. The methodology presented here demonstrates significant advancements in the accuracy and robustness of fuel moisture estimates, which are critical for fire forecasting and management.

Farguell, Angel (ORCID:000000032395220X)↗

Integrating Reanalysis and Satellite Cloud Information to Estimate Surface Downward Long-Wave Radiation

The estimation of downward long-wave radiation (DLR) at the surface is very important for the understanding of the Earth’s radiative budget with implications in surface–atmosphere exchanges, climate variability, and global warming. Theoretical radiative transfer and observationally based studies identify the crucial role of clouds in modulating the temporal and spatial variability of DLR. In this study, a new machine learning algorithm that uses multivariate adaptive regression splines (MARS) and the combination of near-surface meteorological data with satellite cloud information is proposed. The new algorithm is compared with the current operational formulation used by the European Organization for the Exploitation of Meteorological Satellites (EUMETSAT) Satellite Application Facility on Land Surface Analysis (LSA-SAF). Both algorithms use near-surface temperature and dewpoint temperature along with total column water vapor from the latest European Centre for Medium-range Weather Forecasts (ECMWF) reanalysis ERA5 and satellite cloud information from the Meteosat Second Generation. The algorithms are trained and validated using both ECMWF-ERA5 and DLR acquired from 23 ground stations as part of the Baseline Surface Radiation Network (BSRN) and the Atmospheric Radiation Measurement (ARM) user facility. Results show that the MARS algorithm generally improves DLR estimation in comparison with other model estimates, particularly when trained with observations. When considering all the validation data, root mean square errors (RMSEs) of 18.76, 23.55, and 22.08 W·m –2 are obtained for MARS, operational LSA-SAF, and ERA5, respectively. The added value of using the satellite cloud information is accessed by comparing with estimates driven by ERA5 total cloud cover, showing an increase of 17% of the RMSE. The consistency of MARS estimate is also tested against an independent dataset of 52 ground stations (from FLUXNET2015), further supporting the good performance of the proposed model.

54 ENVIRONMENTAL SCIENCES↗

Intercomparison of Planetary Boundary Layer Heights Using Remote Sensing Retrievals and ERA5 Reanalysis over Central Amazonia

The atmospheric boundary layer height (zi) is a key parameter in the vertical transport of mass, energy, moisture, and chemical species between the surface and the free atmosphere. There is a lack of long-term and continuous observations of zi, however, particularly for remote regions, such as the Amazon forest. Reanalysis products, such as ERA5, can fill this gap by providing temporally and spatially resolved information on zi. In this work, we evaluate the ERA5 estimates of zi (zi-ERA5) for two locations in the Amazon and corrected them by means of ceilometer, radiosondes, and SODAR measurements (zi-experimental). The experimental data were obtained at the remote Amazon Tall Tower Observatory (ATTO) with its pristine tropical forest cover and the T3 site downwind of the city of Manaus with a mixture of forest (63%), pasture (17%), and rivers (20%). We focus on the rather typical year 2014 and the El Niño year 2015. The comparison of the experimental vs. ERA5 zi data yielded the following results: (i) zi-ERA5 underestimates zi-experimental daytime at the T3 site for both years 2014 (30%, underestimate) and 2015 (15%, underestimate); (ii) zi-ERA5 overestimates zi-experimental daytime at ATTO site (12%, overestimate); (iii) during nighttime, no significant correlation between the zi-experimental and zi-ERA5 was observed. Based on these findings, we propose a correction for the daytime zi-ERA5, for both sites and for both years, which yields a better agreement between experimental and ERA5 data. These results and corrections are relevant for studies at ATTO and the T3 site and can likely also be applied at further locations in the Amazon.

54 ENVIRONMENTAL SCIENCES↗

Apparent dust size discrepancy in aerosol reanalysis in north African dust after long-range transport

North African dust reaches the southeastern United States every summer. Size-resolved dust mass measurements taken in Miami, Florida, indicate that more than one-half of the surface dust mass concentrations reside in particles with geometric diameters less than 2.1 µm, while vertical profiles of micropulse lidar depolarization ratios show dust reaching above 4 km during pronounced events. These observations are compared to the representation of dust in the Modern-Era Retrospective analysis for Research and Applications, version 2 (MERRA-2) aerosol reanalysis and closely related Goddard Earth Observing System model version 5 (GEOS-5) Forward Processing (FP) aerosol product, both of which assimilate satellite-derived aerosol optical depths using a similar protocol and inputs. These capture the day-to-day variability in aerosol optical depth well, in a comparison to an independent sun-photometer-derived aerosol optical depth dataset. Most of the modeled dust mass resides in diameters between 2 and 6 µm, in contrast to the measurements. Model-specified mass extinction efficiencies equate light extinction with approximately 3 times as much aerosol mass, in this size range, compared to the measured dust sizes. GEOS-5 FP surface-layer sea salt mass concentrations greatly exceed observed values, despite realistic winds and relative humidities. In combination, these observations help explain why, despite realistic total aerosol optical depths, (1) free-tropospheric model volume extinction coefficients are lower than those retrieved from the micro-pulse lidar, suggesting too-low model dust loadings in the free troposphere, and (2) model dust mass concentrations near the surface can be higher than those measured. The modeled vertical distribution of dust, when captured, is reasonable. Large, aspherical particles exceeding the modeled dust sizes are also occasionally present, but dust particles with diameters exceeding 10 µm contribute little to the measured total dust mass concentrations after such long-range transport. Remaining uncertainties warrant a further integrated assessment to confirm this study's interpretations.

54 ENVIRONMENTAL SCIENCES↗

Quantifying the impacts of atmospheric rivers on the surface energy budget of the Arctic based on reanalysis

We present a comprehensive analysis of Arctic surface energy budget (SEB) components during atmospheric river (AR) events identified by integrated water vapor transport exceeding the monthly 85th-percentile climatological threshold in 3-hourly ERA5 reanalysis data from January 1980 to December 2019. Analysis of average anomalies in SEB components, net SEB, and the overall AR contribution to both the seasonal SEB components and net SEB climatology reveals clear seasonality and distinct land–sea–sea ice contrast patterns. Over the sea-ice-covered central Arctic Ocean, ARs significantly impact net SEB, inducing substantial surface warming in fall, winter, and spring. This warming is primarily driven by large anomalies in surface downward longwave radiation (LWD), which average 29–45 W m −2 during the cold seasons. In contrast, AR-related LWD anomalies are smaller in summer, averaging around 15 W m −2 , indicating a reduced impact during this season. Over sub-polar oceans, ARs have the most substantial positive impact on net SEB in cold seasons, mainly attributed to significant positive turbulent heat flux anomalies. AR-related turbulent heat anomalies reduce the upward turbulent flux, contributing up to −11 % relative to its seasonal climatology. In summer, ARs induce negative impacts on net SEB, primarily due to reduced shortwave radiation from increased cloud cover during AR events. Over continents, ARs generate smaller absolute impacts on net SEB because the large LWD anomalies are largely offset by corresponding increases in upward longwave radiation, particularly during cold seasons. Additionally, the seemingly large relative contributions of ARs to the net SEB over land primarily reflects the small magnitude of the climatological net SEB over continents. Greenland, especially western Greenland, exhibits significant downward longwave radiation anomalies associated with ARs, which drive large net SEB anomalies and contribute >54 % to mean SEB and induce amplified surface warming year-round. This holds significance for melt events, particularly during summer. Additionally, results of AR-related SEB impacts strongly depend on detection methods, as restrictive AR detection algorithms that emphasize extreme AR events, with large AR-related anomalies, do not necessarily indicate a large overall contribution to the SEB climatology due to the low occurrence frequency of these events. This study quantifies the role of ARs in the surface energy budget, contributing to our understanding of the Arctic warming and sea ice decline in ongoing Arctic amplification.

Arctic Sea ice change↗

Performance of reanalysis and mesoscale models off the coast of Hawai'i

The eastern Hawai'i coast in the United States is characterized by considerable wind resource fuelled by persistent trade winds, making it an important area for energy research. The need is strong for reanalyses and higher-resolution regional simulations where observations have been historically limited, such as Hawai'i's offshore environments. However, studies using offshore observations in other parts of the world have shown that significant errors can occur in reanalyses and wind datasets, which can lead to inaccurate estimates of wind energy generation, payback periods, and extreme weather risks at project locations. The degree of such errors is influenced by a number of factors, including spatial resolution and the handling of processes within the planetary boundary layer (PBL). In this work, we provide a wind resource characterization from year-long lidar buoy measurements off the eastern coast of O'ahu, Hawai'i, an environment previously unobserved at the rotor level, and use the characterization to evaluate the performance of two simulation datasets. The O'ahu deployment location is meteorologically unique and less complex than land-based wind resource characterizations, being strongly characterized by trade winds with minimal land–atmosphere interaction influences. Despite the unique and fairly consistent meteorological conditions, we hypothesize that distinct simulation datasets will exhibit diverse ranges of errors similar to those that have been seen for other offshore locations. We find the European Centre for Medium-Range Weather Forecasts (ECMWF) Reanalysis version 5 (ERA5) to strongly underestimate observed wind speeds at the O'ahu location (bias = −1.54 m s −1 at a height of 140 m above sea level), while a regional Weather Research and Forecasting Model (WRF) simulation produced by the University of Hawai'i (UH-WRF) provides a significantly smaller wind speed bias (−0.25 m s −1 ), highlighting the value of running regional, higher-resolution simulations. The large bias noted for ERA5 is driven by significant underestimation of fast wind speeds (>9 m s −1 ), which the study site is largely characterized by, along with discontinuities in the ERA5 diurnal cycle. We also speculate that the relative sparsity of observations for data assimilation in this remote part of the world could influence the performance of ERA5 and that challenges with characterizing island effects could impact the performance of both datasets.

17 WIND ENERGY↗

Pneumonia After Bacterial or Viral Infection Preceded or Followed by Radiation Exposure: A Reanalysis of Older Radiobiologic Data and Implications for Low-Dose Radiation Therapy for Coronavirus Disease 2019 Pneumonia

Currently, there are about 15 ongoing clinical studies on low dose radiation therapy for Coronavirus Disease 2019 pneumonia. One of the underlying assumptions is that irradiation of 0.5 to 1.5 Gy is effective at ameliorating viral pneumonia. We aimed to reanalyze all available experimental radiobiologic data to assess evidence for such amelioration.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Forty-year hydropower generation reanalysis for Conterminous United States

First published in 2022, the RectifHyd dataset provides hydrologically consistent estimates of monthly net generation for approximately 1,500 hydropower plants in the United States, addressing a gap in industrial surveys that have collected monthly generation data from only ~10% of plants post-2003. Here we present RectifHydPlus—an extended and enhanced dataset that improves on both the proxy information and temporal downscaling methodology adopted in RectifHyd. In addition to providing updated estimates of historical monthly generation for 590 plants with >10 MW nameplate capacity from 1980 through 2019, RectifHydPlus adds a hydrological control dataset that isolates the influence of historical water availability on generation. The new hydrological control dataset is suited to applications seeking to represent the capabilities of the contemporary fleet subject to historical interannual variability in climate. RectifHydPlus also includes a forty-year, daily-resolution, spill-adjusted water release time series for each dam, allowing users to aggregate generation estimates to the desired temporal resolution.

Hydroelectricity↗