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At least 55 records · Page 3

Geminate exciton fusion fluorescence as a probe of triplet exciton transport after singlet fission

The geminate annihilation of two triplet excitons created by singlet exciton fission is affected by the dimensionality of transport as determined by typically anisotropic triplet exciton mobilities in organic molecular crystals. We analyze this process using a random-walk model where the time dynamics of the geminate annihilation probability is determined by the average exciton hopping times along the crystallographic directions. Here, the model is then applied to the geminate fluorescence dynamics in rubrene, where the main channel for triplet-triplet annihilation is via triplet fusion and subsequent photon emission, and we identify the transitions between transport in one, two, and three dimensions.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

AN ALTERNATIVE APPROACH TO MEASURING REVERBERATION LAGS IN ACTIVE GALACTIC NUCLEI

Motivated by recent progress in the statistical modeling of quasar variability, we develop a new approach to measuring emission-line reverberation lags to estimate the size of broad-line regions (BLRs) in active galactic nuclei. Assuming that all emission-line light curves are scaled, smoothed, and displaced versions of the continuum, this alternative approach fits the light curves directly using a damped random walk model and aligns them to recover the time lag and its statistical confidence limits. We introduce the mathematical formalism of this approach and demonstrate its ability to cope with some of the problems for traditional methods, such as irregular sampling, correlated errors, and seasonal gaps. We redetermine the lags for 87 emission lines in 31 quasars and reassess the BLR size-luminosity relationship using 60 H{beta} lags. We confirm the general results from the traditional cross-correlation methods, with a few exceptions. Our method, however, also supports a broad range of extensions. In particular, it can simultaneously fit multiple lines and continuum light curves which improves the lag estimate for the lines and provides estimates of the error correlations between them. Determining these correlations is of particular importance for interpreting emission-line velocity-delay maps. We can also include parameters for luminosity-dependent lags or line responses. We use this to detect the scaling of the BLR size with continuum luminosity in NGC 5548.

79 ASTRONOMY AND ASTROPHYSICS↗

New constraints on quantum gravity from X-ray and gamma-ray observations

One aspect of the quantum nature of spacetime is its “foaminess” at very small scales. Many models for spacetime foam are defined by the accumulation power α, which parameterizes the rate at which Planck-scale spatial uncertainties (and the phase shifts they produce) may accumulate over large path lengths. Here α is defined by the expression for the path-length fluctuations, δℓ, of a source at distance ℓ, wherein δℓ≃ℓ{sup 1−α}ℓ{sub P}{sup α}, with ℓ{sub P} being the Planck length. We reassess previous proposals to use astronomical observations of distant quasars and active galactic nuclei to test models of spacetime foam. We show explicitly how wavefront distortions on small scales cause the image intensity to decay to the point where distant objects become undetectable when the path-length fluctuations become comparable to the wavelength of the radiation. We use X-ray observations from Chandra to set the constraint α≳0.58, which rules out the random-walk model (with α=1/2). Much firmer constraints can be set by utilizing detections of quasars at GeV energies with Fermi and at TeV energies with ground-based Cerenkov telescopes: α≳0.67 and α≳0.72, respectively. These limits on α seem to rule out α=2/3, the model of some physical interest.

79 ASTRONOMY AND ASTROPHYSICS↗

Chromatin organization regulates viral egress dynamics

Various types of DNA viruses are known to elicit the formation of a large nuclear viral replication compartment and marginalization of the cell chromatin. We used three-dimensional soft x-ray tomography, confocal and electron microscopy, combined with numerical modelling of capsid diffusion to analyse the molecular organization of chromatin in herpes simplex virus 1 infection and its effect on the transport of progeny viral capsids to the nuclear envelope. Our data showed that the formation of the viral replication compartment at late infection resulted in the enrichment of heterochromatin in the nuclear periphery accompanied by the compaction of chromatin. Random walk modelling of herpes simplex virus 1–sized particles in a three-dimensional soft x-ray tomography reconstruction of an infected cell nucleus demonstrated that the peripheral, compacted chromatin restricts viral capsid diffusion, but due to interchromatin channels capsids are able to reach the nuclear envelope, the site of their nuclear egress.

59 BASIC BIOLOGICAL SCIENCES↗

ANOMALOUS TRANSPORT OF HIGH-ENERGY COSMIC RAYS IN GALACTIC SUPERBUBBLES. I. NUMERICAL SIMULATIONS

We present a simple continuous-time random-walk model for the transport of energetic particles accelerated by a collection of supernova explosions in a galactic superbubble, developed to simulate and highlight signatures of anomalous transport on the particles' evolution and their spectra in a multi-shock context. We assume standard diffusive shock acceleration (DSA) theory for each shock encounter. The superbubble (an OB stars association) is idealized as a heterogeneous region of particle sources and sinks bounded by a random surface. The model is based on two coupled stochastic differential equations and is applied for protons and alpha particles. Using characteristic values for a typical bubble, our simulations suggest that acceleration and transport in the bubble may be sub-diffusive. In addition, a spectral break in the particles' evolution and spectra is evident located at Almost-Equal-To 10{sup 15} eV for protons and Almost-Equal-To 3 Multiplication-Sign 10{sup 15} eV for alphas. Our simulations are consistent with a bubble's mean magnetic field strength of Almost-Equal-To 1 {mu}G and a shock separation distance {approx}0.1 Multiplication-Sign the characteristic radius of the bubble. The simulations imply that the diffusion coefficient (for the elementary shock acceleration process) is {approx}< 10{sup 27} cm{sup 2} s{sup -1} at 1 GeV/c. While the sub-diffusive transport is readily attributed to the stochastic nature of the acceleration time according to DSA theory, the spectral break appears to be an artifact of transport in a finite medium. These simulations point to a new and intriguing phenomenon associated with the statistical nature of collective acceleration of high-energy cosmic rays in galactic superbubbles.

79 ASTRONOMY AND ASTROPHYSICS↗

On an asymptotic viscosity solution property of solutions of discrete Hamilton–Jacobi–Bellman equations

In this paper, we show that a proper limit of solutions of discrete Hamilton–Jacobi–Bellman (dHJB) equations in a random walk model becomes a viscosity solution of a Hamilton–Jacobi–Bellman (HJB) variational inequality in a continuous-time geometric Brownian model. HJB variational inequalities are used to analyze singular stochastic control problems in mathematical finance. By our result, with the help of dHJB equations, we can obtain viscosity solutions of HJB variational inequalities which are usually identified with the value functions of the singular stochastic control problems.

97 MATHEMATICS AND COMPUTING↗

How microscopic epistasis and clonal interference shape the fitness trajectory in a spin glass model of microbial long-term evolution

The adaptive dynamics of evolving microbial populations takes place on a complex fitness landscape generated by epistatic interactions. The population generically consists of multiple competing strains, a phenomenon known as clonal interference. Microscopic epistasis and clonal interference are central aspects of evolution in microbes, but their combined effects on the functional form of the population’s mean fitness are poorly understood. Here, we develop a computational method that resolves the full microscopic complexity of a simulated evolving population subject to a standard serial dilution protocol. Through extensive numerical experimentation, we find that stronger microscopic epistasis gives rise to fitness trajectories with slower growth independent of the number of competing strains, which we quantify with power-law fits and understand mechanistically via a random walk model that neglects dynamical correlations between genes. We show that increasing the level of clonal interference leads to fitness trajectories with faster growth (in functional form) without microscopic epistasis, but leaves the rate of growth invariant when epistasis is sufficiently strong, indicating that the role of clonal interference depends intimately on the underlying fitness landscape. The simulation package for this work may be found at https://github.com/nmboffi/spin_glass_evodyn .

59 BASIC BIOLOGICAL SCIENCES↗

How microscopic epistasis and clonal interference shape the fitness trajectory in a spin glass model of microbial long-term evolution

The adaptive dynamics of evolving microbial populations takes place on a complex fitness landscape generated by epistatic interactions. The population generically consists of multiple competing strains, a phenomenon known as clonal interference. Microscopic epistasis and clonal interference are central aspects of evolution in microbes, but their combined effects on the functional form of the population’s mean fitness are poorly understood. Here, we develop a computational method that resolves the full microscopic complexity of a simulated evolving population subject to a standard serial dilution protocol. Through extensive numerical experimentation, we find that stronger microscopic epistasis gives rise to fitness trajectories with slower growth independent of the number of competing strains, which we quantify with power-law fits and understand mechanistically via a random walk model that neglects dynamical correlations between genes. We show that increasing the level of clonal interference leads to fitness trajectories with faster growth (in functional form) without microscopic epistasis, but leaves the rate of growth invariant when epistasis is sufficiently strong, indicating that the role of clonal interference depends intimately on the underlying fitness landscape. The simulation package for this work may be found at https://github.com/nmboffi/spin_glass_evodyn .

59 BASIC BIOLOGICAL SCIENCES↗

Arc spot grouping: An entanglement of arc spot cells

In recent experiments, clear transitions in velocity and trail width of an arc spot initiated on nanostructured tungsten were observed on the boundary of the thick and thin nanostructured layer regions. The velocity of arc spot was significantly decreased on the thick nanostructured region. It was suggested that the grouping decreased the velocity of arc spot. In this study, we try to explain the phenomena using a simple random walk model that has properties of directionality and self-avoidance. And grouping feature was added by installing an attractive force between spot cells with dealing with multi-spots. It was revealed that an entanglement of arc spot cells decreased the spot velocity, and spot cells tend to stamp at the same location many times.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

The active CGCG 077-102 NED02 galaxy within the Abell 2063 galaxy cluster

Context.Within the framework of investigating the link between the central super massive black holes in the cores of galaxies and the galaxies themselves, we detected a variable X-ray source in the center of CGCG 077-102 NED02, which is a member of the CGCG 077-102 galaxy pair within the Abell 2063 cluster of galaxies. Aims.Our goal is to combine X-ray and optical data to demonstrate that this object harbors an active super massive black hole in its core, and to relate this to the dynamical status of the galaxy pair within the Abell 2063 cluster. Methods.We usedChandraandXMM-Newtonarchival data to derive the X-ray spectral shape and variability. We also obtained optical spectroscopy to detect the expected emission lines that are typically found in active galactic nuclei. Finally, we used public ZTF imaging data to investigate the optical variability. Results.There is no evidence of multiple X-ray sources or extended components within CGCG 077-102 NED02. Single X-ray spectral models fit the source well. We detect significant, nonrandom inter-observation 0.5–10 keV X-ray flux variabilities, for observations separated by ∼4 days for short-term variations and by up to ∼700 days for long-term variations. Optical spectroscopy points toward a passive galaxy for CGCG 077-102 NED01 and a Seyfert for CGCG 077-102 NED02. The classification of CGCG 077-102 NED02 is also consistent with its X-ray luminosity of over 10 42 erg s −1 . We do not detect short-term variability in the optical ZTF light curves. However, we find a significant long-term stochastic variability in theg-band that can be well described by the damped random walk model with a best-fit characteristic damping timescale ofτ DRW = 30 −12 +28 days. Finally, the CGCG 077-102 galaxy pair is deeply embedded within the Abell 2063 potential, with a long enough history within this massive structure to have been affected by the influence of this cluster for a long time. Conclusions.Our observations point toward a moderately massive black hole in the center of CGCG 077-102 NED02 of ∼10 6 M ⊙ . As compared to another similar pair in the literature, CGCG 077-102 NED02 is not heavily obscured, perhaps because of the surrounding intracluster medium ram-pressure stripping.

Astronomy & Astrophysics↗

Characterizing the Influence of Fracture Density on Network Scale Transport

The topology of natural fracture networks is inherently linked to the structure of the fluid velocity field and transport therein. Here we study the impact of network density on flow and transport behaviors. We stochastically generate fracture networks of varying density and simulate flow and transport with a discrete fracture network model, which fully resolves network topology at the fracture scale. We study conservative solute trajectories with Lagrangian particle tracking and find that as fracture density decreases, solute channelization to large local fractures increases, thereby reducing plume spreading. Furthermore, in sparse networks mean particle travel distance increases and local network features, such as velocity zones where flow is counter to the primary pressure gradient, become increasingly important for transport. As the network density increases, network statistics homogenize and such local features have a reduced impact. We quantify local topological influence on transport behavior with an effective tortuosity parameter, which measures the ratio of total advective distance to linear distance at the fracture scale; large tortuosity values are correlated to slow-velocity regions. Additionally, these large tortuosity, slow-velocity regions delay downstream transport and enhance tailing on particle breakthrough curves. Finally, we predict transport with an upscaled, Bernoulli spatial Markov random walk model and parameterize local topological influences with a novel tortuosity parameter. Furthermore, Bernoulli model predictions improve when sampling from a tortuosity distribution, as opposed to a fixed value as has previously been done, suggesting that local network topological features must be carefully considered in upscaled modeling efforts of fracture network systems.

58 GEOSCIENCES↗

Correlation function induced by a generalized diffusion equation with the presence of a harmonic potential

An integro-differential diffusion equation with linear force, based on the continuous time random walk model, is considered. The equation generalizes the ordinary and fractional diffusion equations, which includes short, intermediate and long-time memory effects described by the waiting time probability density function. Analytical expression for the correlation function is obtained and analyzed, which can be used to describe, for instance, internal motions of proteins. The result shows that the generalized diffusion equation has a broad application and it may be used to describe different kinds of systems. - Highlights: • Calculation of the correlation function. • The correlation function is connected to the survival probability. • The model can be applied to the internal dynamics of proteins.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Extreme Variability in a Broad Absorption Line Quasar

CRTS J084133.15+200525.8 is an optically bright quasar at z = 2.345 that has shown extreme spectral variability over the past decade. Photometrically, the source had a visual magnitude of V ∼ 17.3 between 2002 and 2008. Then, over the following five years, the source slowly brightened by approximately one magnitude, to V ∼ 16.2. Only ∼1 in 10,000 quasars show such extreme variability, as quantified by the extreme parameters derived for this quasar assuming a damped random walk model. A combination of archival and newly acquired spectra reveal the source to be an iron low-ionization broad absorption line quasar with extreme changes in its absorption spectrum. Some absorption features completely disappear over the 9 years of optical spectra, while other features remain essentially unchanged. We report the first definitive redshift for this source, based on the detection of broad H α in a Keck/MOSFIRE spectrum. Absorption systems separated by several 1000 km s{sup −1} in velocity show coordinated weakening in the depths of their troughs as the continuum flux increases. We interpret the broad absorption line variability to be due to changes in photoionization, rather than due to motion of material along our line of sight. This source highlights one sort of rare transition object that astronomy will now be finding through dedicated time-domain surveys.

79 ASTRONOMY AND ASTROPHYSICS↗

OPTIMAL TIME-SERIES SELECTION OF QUASARS

We present a novel method for the optimal selection of quasars using time-series observations in a single photometric bandpass. Utilizing the damped random walk model of Kelly et al., we parameterize the ensemble quasar structure function in Sloan Stripe 82 as a function of observed brightness. The ensemble model fit can then be evaluated rigorously for and calibrated with individual light curves with no parameter fitting. This yields a classification in two statistics-one describing the fit confidence and the other describing the probability of a false alarm-which can be tuned, a priori, to achieve high quasar detection fractions (99% completeness with default cuts), given an acceptable rate of false alarms. We establish the typical rate of false alarms due to known variable stars as {approx}<3% (high purity). Applying the classification, we increase the sample of potential quasars relative to those known in Stripe 82 by as much as 29%, and by nearly a factor of two in the redshift range 2.5 < z < 3, where selection by color is extremely inefficient. This represents 1875 new quasars in a 290 deg{sup 2} field. The observed rates of both quasars and stars agree well with the model predictions, with >99% of quasars exhibiting the expected variability profile. We discuss the utility of the method at high redshift and in the regime of noisy and sparse data. Our time-series selection complements well-independent selection based on quasar colors and has strong potential for identifying high-redshift quasars for Baryon Acoustic Oscillations and other cosmology studies in the LSST era.

79 ASTRONOMY AND ASTROPHYSICS↗

Pore-scale intermittent velocity structure underpinning anomalous transport through 3-D porous media

We study the nature of non-Fickian particle transport in 3-D porous media by simulating fluid flow in the intricate pore space of real rock. We solve the full Navier-Stokes equations at the same resolution as the 3-D micro-CT (computed tomography) image of the rock sample and simulate particle transport along the streamlines of the velocity field. We find that transport at the pore scale is markedly anomalous: longitudinal spreading is superdiffusive, while transverse spreading is subdiffusive. We demonstrate that this anomalous behavior originates from the intermittent structure of the velocity field at the pore scale, which in turn emanates from the interplay between velocity heterogeneity and velocity correlation. Finally, we propose a continuous time random walk model that honors this intermittent structure at the pore scale and captures the anomalous 3-D transport behavior at the macroscale.

54 ENVIRONMENTAL SCIENCES↗

Tempered fractional calculus

Fractional derivatives and integrals are convolutions with a power law. Multiplying by an exponential factor leads to tempered fractional derivatives and integrals. Tempered fractional diffusion equations, where the usual second derivative in space is replaced by a tempered fractional derivative, govern the limits of random walk models with an exponentially tempered power law jump distribution. The limiting tempered stable probability densities exhibit semi-heavy tails, which are commonly observed in finance. Tempered power law waiting times lead to tempered fractional time derivatives, which have proven useful in geophysics. The tempered fractional derivative or integral of a Brownian motion, called a tempered fractional Brownian motion, can exhibit semi-long range dependence. The increments of this process, called tempered fractional Gaussian noise, provide a useful new stochastic model for wind speed data. A tempered fractional difference forms the basis for numerical methods to solve tempered fractional diffusion equations, and it also provides a useful new correlation model in time series.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Engineering Scale Simulation of Nonequilibrium Network Phases for Battery Electrolytes

According to the article, Diblock copolymers play an important role in the fabrication of battery materials and fuel cells. For these applications, one block provides mechanical stability, whereas the other is conducting. The application characteristics of the material critically depend on the morphology of the multicomponent material, and three-dimensional, percolating domains of the conducting domains are preferred. In this work, we investigate the nonequilibrium morphology of diblock copolymers after a quench from the disordered phase. After the spinodal self-assembly, we observe three-dimensionally percolating network structures for volume fractions, f ≥ 8/32, of the conducting component even if the equilibrium phases exhibit different percolation properties. We quantify the conductivity and tortuosity of these structures via a simple random-walk model and observe that the conductivity of the nonequilibrium structures is significantly smaller than that of the equilibrium phases. We also find large but finite-sized, fractal-like structures inside the morphology, which influence the transport properties. To explore the morphology on different scales and mitigate finite-size effects, we employ very large simulations with billions of particles. Our work demonstrates that for the prediction of bulk transport properties in these nonequilibrium morphologies it is necessary to study such large system sizes.

Polymer Science↗

Dendritic Assembly of Gold Nanoparticles during Fuel-Forming Electrocatalysis

We report on the dendritic assembly of alkanethiol-capped gold nanoparticles on a glassy carbon support during electrochemical reduction of protons and CO 2 . We discovered that the primary mechanism by which surfactant-ligated gold nanoparticles lose surface area is by taking a random walk along the support, colliding with their neighbors, and fusing to form dendrites, a type of fractal aggregate. A random walk model reproduces the fractal dimensionality of the dendrites observed experimentally. The rate at which the dendrites form is strongly dependent on the solubility of the surfactant in the electrochemical double layer under the conditions of electrolysis. Since alkanethiolate surfactants reductively desorb at potentials close to the onset of CO 2 reduction, they do not poison the catalytic activity of the gold nanoparticles. While catalyst mobility is typically thought to be limited for room-temperature electrochemistry, our results reflect that nanoparticle mobility is significant under conditions at which they electrochemically catalyze gas evolution, even in the presence of a high surface area carbon and binder. A careful understanding of the electrolyte- and polarization-dependent nanoparticle aggregation kinetics informs strategies for maintaining catalyst dispersion during fuel-forming electrocatalysis.

dendrons↗