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Continental Spatio-Temporal Data Analysis with Linear Spectral Mixture Model Using FOSS

This work demonstrates the development and implementation of a Fully Constrained Least Squares (FCLS) unmixing model developed in C++ programming language with OpenCV package and boost C++ libraries in the NASA Earth Exchange (NEX). Visualization of the results is supported by GRASS GIS and statistical analysis is carried in R in a Linux system environment. FCLS was first tested on computer simulated data with Gaussian noise of various signal-to-noise ratio, and Landsat data of an agricultural scenario and an urban environment using a set of global end members of substrate (soils, sediments, rocks, and non-photosynthetic vegetation), vegetation that includes green photosynthetic plants and dark objects which encompasses absorptive substrate materials, clear water, deep shadows, etc. For the agricultural scenario, a spectrally diverse collection of 11 scenes of Level 1 terrain corrected, cloud free Landsat-5 TM data of Fresno, California, USA were unmixed and the results were validated with the corresponding ground data. To study an urbanized landscape, a clear sky Landsat-5 TM data were unmixed and validated with coincident World View-2 abundance maps (of 2 m spatial resolution) for an area of San Francisco, California, USA. The results were evaluated using descriptive statistics, correlation coefficient, RMSE, probability of success, boxplot and bivariate distribution function. Finally, FCLS was used for sub-pixel land cover analysis of the monthly WELD (Wen-enabled Landsat data) repository from 2008 to 2011 of North America. The abundance maps in conjunction with DMSP-OLS nighttime lights data were used to extract the urban land cover features and analyze their spatial-temporal growth.

Landsat Satellites↗

Developing Mass Spectrometry for Water Quantitation and Volatiles Analysis from In-Situ Regolith

With a revived focus to create a sustainable hu-man presence on the moon, and in preparation for future Mars exploration, it is imperative that all resources are utilized to their fullest potential [1]. In-Situ Resource Utilization (ISRU) will be critical for future mission success as it would enable in-dependent operation of missions while reducing the dependence on the complex supply chain created between the Earth, the moon and Mars. One of the most critical resources that has been identified for ISRU on the lunar surface is water [2]. Water is a versatile resource that can be used in various space operations, such as ra-diation shielding and conversion to oxygen (O2) for propellant [3,4]. One of the most water rich resources is thought to be within the regolith lo-cated in the permanently shadowed regions (PSR) of the Moon; several upcoming missions, such as PRIME-1 and VIPER, are already sched-uled to confirm this hypothesis [5,6]. However, there are currently no missions planned to quanti-fy the abudance of water at these regions. The quantity of water contained in the ice will inform and help the development of future ISRU plants and operation. Water and other volatile gases can be detect-ed upon controlled heating of icy lunar regolith for an accurate quantification of water. This method is similar to thermogravimetric analysis, which was used to analyze Apollo lunar regolith sam-ples. However, losses via sublimation/evaporation or contamination may have occurred with the samples due to the transit and exposure to the terrestrial environment. Furthermore, water would not be expected for these samples since they were not collected from a PSR. Thus, for more accurate results, icy lunar regolith should be ana-lyzed in situ to provide the most representative composition of both water and other volatile gas-es. The Light Water Analysis and Volatile Extract (LightWAVE) project aims to address this knowledge gap. A system has been developed to collect, heat and analyze evolved gases from lu-nar regolith on the lunar surface. The gases will be analyzed by a modified commercial off the shelf (COTS) residual gas analyzer (RGA) quad-rupole mass spectrometer. Evolved gases from heated regolith samples can be identified by the observed mass-to-charge (m/z) ratios, and the peak intensities correlate to the abundances of the observed gases for quantitation. Therefore, our group is developing a calibration methodology utilizing a COTS RGA to quantitate water from in-situ regolith samples on the lunar surface. The partial pressure of water and ideal gas law will be used to quantify the total water evolved from a regolith sample. Here we present our methodol-ogy for the design and calibration for water quan-titation using a COTS RGA.

Nilab Azim↗

Groundbased near-IR observations of the surface of Venus

We present images of the nightside of Venus taken in the near-infrared windows at 1.0, 1.1, 1.18, 1.28, 1.31, and 2.3 microns with the new infrared camera/spectrometer IRIS on the Anglo-Australian Telescope. These data were taken in spectral-mapping mode. This technique involves scanning the telescope perpendicular to the slit, while collecting spectra at successive slit positions across the planet. We produce data cubes with one spectral and two spatial dimensions. Images can be extracted over any wavelength regions. Each image has square pixels of 0.8 inch resolution. We reduced the scattered light from the sunlit crescent in images extracted from each window by subtracting images taken on either side of the window, where the Venus atmosphere is opaque. Unlike the short wavelength windows, which reveal thermal contrasts that originate primarily from the surface and deep atmosphere, the emission in the 2.3 microns window is produced at much higher altitudes (30-40 km). Emission contrasts seen near 2.3 microns are associated with horizontal variations in the cloud optical depths, and have rotation periods of about six days. We detect large contrasts in infrared emission (20-40 percent) across the disc of Venus in the 1.0-, 1.1-, 1.18-, 1.28-, and 1.31-micron images. Contrasts at these wavelengths may be due to a combination of variations in the optical depths of the overlying sulfuric acid clouds and differences in surface emission. Comparison with the 2.3-micron images show that the patterns seen in the 1.28- and 1.31-micron windows are consistent with cloud optical depth variations alone and require no contribution from the surface. However, images at 1.0, 1.1, and 1.8 microns from July 1991 show a dark feature having a contrast that increases with decreasing wavelength. This behavior is contrary to that expected of cloud absorption. Images taken on three successive days in October show another dark feature that is stationary with respect to the surface. These regions of lower emission correspond closely to the high-altitude surface regions of Beta Regio and Aphrodite Terra. The images can potentially reveal the near-infrared emissiveity of the surface of Venus, thereby complementing Magellan radar reflectivity and ground based radio emissivity measurements. The contrast ratio between highlands and plains is much smaller than would be expected for blackbody radiation from the surface along. Unlike at radio wavelengths, where the atmosphere is essentially transparent, at near-infrared wavelengths the atmosphere emits, absorbs, and scatters radiation, and can modify the observed topographically induced contrasts. The additional radiation from the atmosphere reduces the contrast, and further modification would be expected if terrain at different altitudes has different emissivities. A fit to our data therefore requires, and may constrain, a model of the lowest scale height of the atmosphere.

Meadows, V. S.↗

Laser Rayleigh and Raman Diagnostics for Small Hydrogen/oxygen Rockets

Localized velocity, temperature, and species concentration measurements in rocket flow fields are needed to evaluate predictive computational fluid dynamics (CFD) codes and identify causes of poor rocket performance. Velocity, temperature, and total number density information have been successfully extracted from spectrally resolved Rayleigh scattering in the plume of small hydrogen/oxygen rockets. Light from a narrow band laser is scattered from the moving molecules with a Doppler shifted frequency. Two components of the velocity can be extracted by observing the scattered light from two directions. Thermal broadening of the scattered light provides a measure of the temperature, while the integrated scattering intensity is proportional to the number density. Spontaneous Raman scattering has been used to measure temperature and species concentration in similar plumes. Light from a dye laser is scattered by molecules in the rocket plume. Raman spectra scattered from major species are resolved by observing the inelastically scattered light with linear array mounted to a spectrometer. Temperature and oxygen concentrations have been extracted by fitting a model function to the measured Raman spectrum. Results of measurements on small rockets mounted inside a high altitude chamber using both diagnostic techniques are reported.

Degroot, Wilhelmus A.↗

Kepler Data Validation I: Architecture, Diagnostic Tests, and Data Products for Vetting Transiting Planet Candidates

The Kepler Mission was designed to identify and characterize transiting planets in the Kepler Field of View and to determine their occurrence rates. Emphasis was placed on identification of Earth-size planets orbiting in the Habitable Zone of their host stars. Science data were acquired for a period of four years. Long-cadence data with 29.4 min sampling were obtained for approx. 200,000 individual stellar targets in at least one observing quarter in the primary Kepler Mission. Light curves for target stars are extracted in the Kepler Science Data Processing Pipeline, and are searched for transiting planet signatures. A Threshold Crossing Event is generated in the transit search for targets where the transit detection threshold is exceeded and transit consistency checks are satisfied. These targets are subjected to further scrutiny in the Data Validation (DV) component of the Pipeline. Transiting planet candidates are characterized in DV, and light curves are searched for additional planets after transit signatures are modeled and removed. A suite of diagnostic tests is performed on all candidates to aid in discrimination between genuine transiting planets and instrumental or astrophysical false positives. Data products are generated per target and planet candidate to document and display transiting planet model fit and diagnostic test results. These products are exported to the Exoplanet Archive at the NASA Exoplanet Science Institute, and are available to the community. We describe the DV architecture and diagnostic tests, and provide a brief overview of the data products. Transiting planet modeling and the search for multiple planets on individual targets are described in a companion paper. The final revision of the Kepler Pipeline code base is available to the general public through GitHub. The Kepler Pipeline has also been modified to support the Transiting Exoplanet Survey Satellite (TESS) Mission which is expected to commence in 2018.

data analysis↗

Processing LiDAR Data to Predict Natural Hazards

ELF-Base and ELF-Hazards (wherein 'ELF' signifies 'Extract LiDAR Features' and 'LiDAR' signifies 'light detection and ranging') are developmental software modules for processing remote-sensing LiDAR data to identify past natural hazards (principally, landslides) and predict future ones. ELF-Base processes raw LiDAR data, including LiDAR intensity data that are often ignored in other software, to create digital terrain models (DTMs) and digital feature models (DFMs) with sub-meter accuracy. ELF-Hazards fuses raw LiDAR data, data from multispectral and hyperspectral optical images, and DTMs and DFMs generated by ELF-Base to generate hazard risk maps. Advanced algorithms in these software modules include line-enhancement and edge-detection algorithms, surface-characterization algorithms, and algorithms that implement innovative data-fusion techniques. The line-extraction and edge-detection algorithms enable users to locate such features as faults and landslide headwall scarps. Also implemented in this software are improved methodologies for identification and mapping of past landslide events by use of (1) accurate, ELF-derived surface characterizations and (2) three LiDAR/optical-data-fusion techniques: post-classification data fusion, maximum-likelihood estimation modeling, and hierarchical within-class discrimination. This software is expected to enable faster, more accurate forecasting of natural hazards than has previously been possible.

Fairweather, Ian↗

Automated measurement of birefringence - Development and experimental evaluation of the techniques

Traditional photoelasticity has started to lose its appeal since it requires a well-trained specialist to acquire and interpret results. A spectral-contents-analysis approach may help to revive this old, but still useful technique. Light intensity of the beam passed through the stressed specimen contains all the information necessary to automatically extract the value of retardation. This is done by using a photodiode array to investigate the spectral contents of the light beam. Three different techniques to extract the value of retardation from the spectral contents of the light are discussed and evaluated. An experimental system was built which demonstrates the ability to evaluate retardation values in real time.

Voloshin, A. S.↗

The influence of unsteady aerodynamics on extracted aircraft parameters

The effect of accounting for unsteady aerodynamics on the parameters extracted from flight data is examined. Longitudinal equations of motion have been modified, and a parameter-extraction program developed to include the effects of unsteady aerodynamics. The approach used was to generate pseudo data using the unsteady-aerodynamics model and to use that data in two parameter-extraction programs, one including and the other neglecting unsteady effects to see if the parameters were significantly different. Flight data for a light airplane also was used with the two extraction programs for the same purpose. Results showed that, for the cases considered, including unsteady aerodynamics in the parameter-extraction program did affect the extracted quantities, particularly the damping in pitch. In addition, the parameter variances were lower when unsteady aerodynamics were included in the extraction program than when the effects were neglected.

Queijo, M. J.↗

HST observations of globular clusters in M 31. 1: Surface photometry of 13 objects

We present the initial results of a study of globular clusters in M 31, using the Faint Object Camera (FOC) on the Hubble Space Telescope (HST). The sample of objects consists of 13 clusters spanning a range of properties. Three independent image deconvolution techniques were used in order to compensate for the optical problems of the HST, leading to mutually fully consistent results. We present detailed tests and comparisons to determine the reliability and limits of these deconvolution methods, and conclude that high-quality surface photometry of M 31 globulars is possible with the HST data. Surface brightness profiles have been extracted, and core radii, half-light radii, and central surface brightness values have been measured for all of the clusters in the sample. Their comparison with the values from ground-based observations indicates the later to be systematically and strongly biased by the seeing effects, as it may be expected. A comparison of the structural parameters with those of the Galactic globulars shows that the structural properties of the M 31 globulars are very similar to those of their Galactic counterparts. A candidate for a post-core-collapse cluster, Bo 343 = G 105, has been already identified from these data; this is the first such detection in the M 31 globular cluster system.

Pecci, F. Fusi↗

Antarctic Photochemistry: Uncertainty Analysis

Understanding the photochemistry of the Antarctic region is important for several reasons. Analysis of ice cores provides historical information on several species such as hydrogen peroxide and sulfur-bearing compounds. The former can potentially provide information on the history of oxidants in the troposphere and the latter may shed light on DMS-climate relationships. Extracting such information requires that we be able to model the photochemistry of the Antarctic troposphere and relate atmospheric concentrations to deposition rates and sequestration in the polar ice. This paper deals with one aspect of the uncertainty inherent in photochemical models of the high latitude troposphere: that arising from imprecision in the kinetic data used in the calculations. Such uncertainties in Antarctic models tend to be larger than those in models of mid to low latitude clean air. One reason is the lower temperatures which result in increased imprecision in kinetic data, assumed to be best characterized at 298K. Another is the inclusion of a DMS oxidation scheme in the present model. Many of the rates in this scheme are less precisely known than are rates in the standard chemistry used in many stratospheric and tropospheric models.

Stewart, Richard W.↗

New Features in the SPOC Pipeline Release 4.0

The Science Processing Operations Center is in the process of testing and deploying Release 4.0 of the codebase in the March 2019 timeframe. This paper describes the new features of the software and their likely impact on the quality of the TESS science data products. The major goals of Release 4.0 are to improve the extraction of photometry from the pixels in light of the non-uniform pointing performance and the identification of instrumental signatures from the light curves. We also describe modifications to the FFI pipeline to allow the generation of FFI light curves, correction of the instrumental systematics therein, and planet searches, primarily for the purpose of validating the 2-min pipeline against the FFI pipeline, but also to be able to provide cotrending basis vectors (CBVs) derived directly from the FFIs to the public to aid them in their extraction and correction of photometry. We also discuss the improvements in photometric performance of the pipeline and its various components.The lapse in funding experienced between 22 December 2018 and 27 January 2019 significantly delayed our ability to conduct integration testing as planned for late December/early January, delaying the start of V&V by one month to the end of February 2019.The TESS Mission is funded by NASA's Science Mission Directorate as an Astrophysics Explorer Mission.The Science Processing Operations Center is in the process of testing and deplo!"ing Release 4.0 of thecodebase In the March 2019 tlmeframe. This paper describes the new features or the software and theirlikely impact on the quality of the TESS science data products. The major goals or Release 4.0 are to Imtheidentification of instrumental signatures from the light cuNes. We also describe modifications tothe FFI pipeline to allow the generation of FFI light curves, correction of the instrumental systematicstherein, and planet searches, primarily for the purpose of validating the 2-min pipelineagainst the FFI pipeline, but also to be able to provide cotrending basis vectors (C3Vs) ,,.~,.;.derived directly from the FFls to the public to aid them in their extractbn and correction , :-; ~'-'\'.'.of photometry. We also discuss the Improvements In photometric performance• of ~~\":;:•the pipeline and its various components. :,;.-.;The lapse In funding experienced between 22 December 2018 and 27January 2019 significantly delayed our ability to conduct Integrationtesting as planned for late December/early January, delaying thestart of V&V by one month to the end of February 2019.The TESS Mission is funded by NASA's Science Mission Directorateas an Astrophysics Explorer Mission.o.iu.c...,.....~~New Features in SPOC 4.01. Use of quatemions In photometry and centroiding.2. Use of quaternions to Identify high-motion cadences and exclude same.3. Use of the TPS detections to deemphasize pathological cadences ("skyline flattenlng"I.4. Improved CAL calculations for black and smear correction.5. PA brightness metric calculation improvements (induo'e crowding in calrulation)./ • 6. Improved POC spike goodness metric.•~• 7. Improved handling of gaps and momentum duni:>S in POC.8. Improved tuning of POC., 9. Improved attitude tweak correction in PDC.10. Improvements in PDC introduced noise and correlation goodness metrics11. Using the improved spike goodness metric to minimize overlitting in the spikeremover ' • :,''l./ 12. Enable FFI processing through planet search.,,. ,• • "« ,;,,,•.~'A , 13.1 D4.V S mtreinaim-relipnoinrgts d aartcah irveetrdie tvoa Ml aAnSdT p ersistence to database 15. Improved management of jobs on the NAS Pleiadss supercomputer

Jenkins, Jon M.↗

Autonomous landing on Mars

Long communication times between earth and Mars demand autonomous landing capabilities. If high-resolution imagery acquired from an orbiter is available to select and certify a specific safe landing site or sites, navigational updates relative to the surface can be used to achieve the necessary accuracy to land within these certified sites. Autonomous registrations of the orbiter's imagery with photographs of the landing area taken by the lander during descent can provide the necessary accuracy and robustness. If orbital imagery is not available, autonomous hazard recognition and avoidance will be required to guide the lander to a hazard-free site. Feature extraction and matching algorithms, applied to visible light imagery and optimized to the terrain discovered by the Viking landers, can provide both an accurate surface-relative navigational update capability and a hazard recognition capability.

Stevenson, John↗

Optical correlators for automated rendezvous and capture

The paper begins with a description of optical correlation. In this process, the propagation physics of coherent light is used to process images and extract information. The processed image is operated on as an area, rather than as a collection of points. An essentially instantaneous convolution is performed on that image to provide the sensory data. In this process, an image is sensed and encoded onto a coherent wavefront, and the propagation is arranged to create a bright spot of the image to match a model of the desired object. The brightness of the spot provides an indication of the degree of resemblance of the viewed image to the mode, and the location of the bright spot provides pointing information. The process can be utilized for AR&C to achieve the capability to identify objects among known reference types, estimate the object's location and orientation, and interact with the control system. System characteristics (speed, robustness, accuracy, small form factors) are adequate to meet most requirements. The correlator exploits the fact that Bosons and Fermions pass through each other. Since the image source is input as an electronic data set, conventional imagers can be used. In systems where the image is input directly, the correlating element must be at the sensing location.

Juday, Richard D.↗

Automatic Determination of the Conic Coronal Mass Ejection Model Parameters

Characterization of the three-dimensional structure of solar transients using incomplete plane of sky data is a difficult problem whose solutions have potential for societal benefit in terms of space weather applications. In this paper transients are characterized in three dimensions by means of conic coronal mass ejection (CME) approximation. A novel method for the automatic determination of cone model parameters from observed halo CMEs is introduced. The method uses both standard image processing techniques to extract the CME mass from white-light coronagraph images and a novel inversion routine providing the final cone parameters. A bootstrap technique is used to provide model parameter distributions. When combined with heliospheric modeling, the cone model parameter distributions will provide direct means for ensemble predictions of transient propagation in the heliosphere. An initial validation of the automatic method is carried by comparison to manually determined cone model parameters. It is shown using 14 halo CME events that there is reasonable agreement, especially between the heliocentric locations of the cones derived with the two methods. It is argued that both the heliocentric locations and the opening half-angles of the automatically determined cones may be more realistic than those obtained from the manual analysis

Pulkkinen, A.↗

PMA-Linked Fluorescence for Rapid Detection of Viable Bacterial Endospores

The most common approach for assessing the abundance of viable bacterial endospores is the culture-based plating method. However, culture-based approaches are heavily biased and oftentimes incompatible with upstream sample processing strategies, which make viable cells/spores uncultivable. This shortcoming highlights the need for rapid molecular diagnostic tools to assess more accurately the abundance of viable spacecraft-associated microbiota, perhaps most importantly bacterial endospores. Propidium monoazide (PMA) has received a great deal of attention due to its ability to differentiate live, viable bacterial cells from dead ones. PMA gains access to the DNA of dead cells through compromised membranes. Once inside the cell, it intercalates and eventually covalently bonds with the double-helix structures upon photoactivation with visible light. The covalently bound DNA is significantly altered, and unavailable to downstream molecular-based manipulations and analyses. Microbiological samples can be treated with appropriate concentrations of PMA and exposed to visible light prior to undergoing total genomic DNA extraction, resulting in an extract comprised solely of DNA arising from viable cells. This ability to extract DNA selectively from living cells is extremely powerful, and bears great relevance to many microbiological arenas.

LaDuc, Myron T.↗

Elucidating Microbial Adaptation Dynamics via Autonomous Exposure and Sampling

The adaptation of micro-organisms to their environments is a complex process of interaction between the pressures of the environment and of competition. Reducing this multifactorial process to environmental exposure in the laboratory is a common tool for elucidating individual mechanisms of evolution, such as mutation rates. Although such studies inform fundamental questions about the way adaptation and even speciation occur, they are often limited by labor-intensive manual techniques. Current methods for controlled study of microbial adaptation limit the length of time, the depth of collected data, and the breadth of applied environmental conditions. Small idiosyncrasies in manual techniques can have large effects on outcomes; for example, there are significant variations in induced radiation resistances following similar repeated exposure protocols. We describe here a project under development to allow rapid cycling of multiple types of microbial environmental exposure. The system allows continuous autonomous monitoring and data collection of both single species and sampled communities, independently and concurrently providing multiple types of controlled environmental pressure (temperature, radiation, chemical presence or absence, and so on) to a microbial community in dynamic response to the ecosystem's current status. When combined with DNA sequencing and extraction, such a controlled environment can cast light on microbial functional development, population dynamics, inter- and intra-species competition, and microbe-environment interaction. The project's goal is to allow rapid, repeatable iteration of studies of both natural and artificial microbial adaptation. As an example, the same system can be used both to increase the pH of a wet soil aliquot over time while periodically sampling it for genetic activity analysis, or to repeatedly expose a culture of bacteria to the presence of a toxic metal, automatically adjusting the level of toxicity based on the number or growth rate of surviving cells. We are on our second prototype iteration, with demonstrated functions of microbial growth monitoring and dynamic exposure to UV-C radiation and temperature. We plan to add functionality for general chemical presence or absence by Nov. 2013. By making the project low-cost and open-source, we hope to encourage others to use it as a basis for future development of a common microbial environmental adaptation testbed.

Microbiology↗

Studies of laser and laser devices

The generation of tunable, infrared, and ultraviolet light, and the control of this light by mode-locking and modulation techniques are discussed. Particular emphasis is given to energy storage and extraction using atomic levels, the development of a tunable narrowband vacuum ultraviolet light source, and to the generation and applications of ultrashort optical pulses.

Harris, S. E.↗