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Seed coat transcriptomic profiling of 5-593, a genotype important for genetic studies of seed coat color and patterning in common bean ( Phaseolus vulgaris L.)

Common bean (Phaseolus vulgaris L.) market classes have distinct seed coat colors, which are directly related to the diverse flavonoids found in the mature seed coat. To understand and elucidate the molecular mechanisms underlying the regulation of seed coat color, RNA-Seq data was collected from the black bean 5-593 and used for a differential gene expression and enrichment analysis from four different seed coat color development stages. 5-593 carries dominant alleles for 10 of the 11 major genes that control seed coat color and expression and has historically been used to develop introgression lines used for seed coat genetic analysis. Pairwise comparison among the four stages identified 6,294 differentially expressed genes (DEGs) varying from 508 to 5,780 DEGs depending on the compared stages. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis revealed that phenylpropanoid biosynthesis, flavonoid biosynthesis, and plant hormone signal transduction comprised the principal pathways expressed during bean seed coat pigment development. Transcriptome analysis suggested that most structural genes for flavonoid biosynthesis and some potential regulatory genes were significantly differentially expressed. Further studies detected 29 DEGs as important candidate genes governing the key enzymatic flavonoid biosynthetic pathways for common bean seed coat color development. Additionally, four gene models, Pv5-593.02G016100, 593.02G078700, Pv5-593.02G090900, and Pv5-593.06G121300, encode MYB-like transcription factor family protein were identified as strong candidate regulatory genes in anthocyanin biosynthesis which could regulate the expression levels of some important structural genes in flavonoid biosynthesis pathway. These findings provide a framework to draw new insights into the molecular networks underlying common bean seed coat pigment development.

60 APPLIED LIFE SCIENCES

Resonance Self-Shielding: Why it is so Important

This paper is one of a series that I am writing to document my 58 years of experience with ENDF and Neutron Transport calculations, beginning when I worked at the National Nuclear Data Center (NNDC), Brookhaven National Laboratory (BNL), from 1967 to 1972. During those years I was the head of the computer unit of NNDC, assigned to develop computer codes to pre-process, view and test ENDF/B data. Since then, I have continued to support the ENDF effort without any official position or monetary compensation, because I realized how important accurate nuclear data is for use in use in our Engineering applications. It is so important to realize that regardless of how accurate or even perfect our application codes may be to transport particles, without accurate nuclear data we are in a “Garbage In = Garbage Out” situation.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS

Mining Product Reviews for Important Product Features of Refurbished iPhones

Problem: Remanufacturers want to increase consumer interest in refurbished products, which motivates the need to understand which product features are important to buyers of refurbished products such as mobile phones. Research Questions: This study addresses two questions. First, which product features are most important for buyers of refurbished iPhones? Second, how do those preferences differ from the preferences of buyers of new iPhones? Methods: Online reviews of iPhones are obtained and converted into a document–term matrix. Using this text model, three subsets of features are identified using statistical analysis of frequency of mention: most frequent, average, and least frequent. A logistic regression (LR) model is then used to identify which features are most predictive of whether a review is for a new or refurbished phone. Results: Buyers of refurbished phones mention battery health, screen/display, shell condition, and brand significantly more often than other features. Directly contrasting reviews of refurbished versus new phones shows that shell condition, brand, speaker, and charger are found to be the most predictive product features indicated in reviews for refurbished phones. Of those, the shell condition is significantly more predictive than the others. Implications: The results identify product features that remanufacturers of iPhones can emphasize to increase customer demand.

Anisi, Atefeh

The importance of ground truth data in remote sensing

Surface observation data is discussed as an essential part of remote sensing research. One of the most important aspects of ground truth is the collection of measurements and observations about the type, size, condition and other physical or chemical properties of importance concerning the materials on the earth's surface that are being sensed remotely. The use of a variety of sensor systems in combination at different altitudes is emphasized.

Hoffer, R. M.

Spectroscopic and photochemical study of molecules important in chemical evolution

The primary broad goals of this research are to investigate (1) the possible reactions responsible for generation of compounds important in chemical evolution, and (2) reactions of compounds important in chemical evolution. In both cases the interest includes molecules that exist in interstellar space as well as those present on or near other planets and those which were thought to be present on or near the primitive earth.

Becker, R. S.

The importance of ozone in the oxidation of sulfur dioxide in nonurban tropospheric clouds

In studies of the various possible mechanisms which contribute to the conversion of atmospheric sulfur dioxide to sulfate aerosol in the atmosphere, oxidation within the aqueous, droplet phase of tropospheric clouds has been identified as a major contributor. It has appeared that possibly much of this oxidation is by hydrogen peroxide, with the contribution from ozone being only minimal. The present investigation is concerned with the relative importance of O3 and H2O2 oxidation as a function of pH. The results of a new experimental study of the O3-S(IV) reaction in aqueous solution are presented, and potential S(IV) oxidation rates by O3 in cloud water are compared with those predicted for H2O2. The investigation indicates the potential importance of O3 as a contributor to the overall oxidative conversion of SO2 within typical nonpolluted tropospheric clouds.

Maahs, H. G.

Neutral and charged clusters in the atmosphere - Their importance and potential role in heterogeneous catalysis

An assessment is presented of current knowledge concerning the role and importance of neutral and charged clusters in atmospheric heterogeneous catalysis, with a view to the recommendation of future studies needed for progress in the quantification of aerosol formation and catalytic reactivity. It is established that nucleation from the gaseous to the aerosol state commences via the formation of clusters among molecules participating in the phase-transformation process. Nucleation may proceed in some cases by way of the formation of prenucleation embryos, which then evolve through the energy barrier and undergo phase transformation. In other cases, cluster-cluster interaction among neutral particles or stagewise building of alternate-sign ion clusters may be important in the gas-to-particle conversion process.

Castleman, A. W., Jr.

Importance and Definition of Materials in Tribology. Status of Understanding

In general, tribological systems consist of three basic components: the material surfaces in contact, the lubricant, and the environment. The materials in contact and the influence of both bulk and surface properties, indicating the importance of material characterization, on tribological behavior are addressed. Since metals and metallic alloys are the most widely used class of materials in practical devices, attention is focused principally on them. With respect to surface behavior, the effect of contaminants both from within the material and from the environment on adhesive behavior is addressed. The various surface events that alter adhesion, friction, and wear are discussed. These include surface reconstruction, segregation, chemisorption, and compound formation. Examples of these events are presented. Minor nuances in the structure of the outermost layers of solids have a pronounced effect on tribological properties. The importance of characterizing the materials of solids in contact in order to achieve a fundamental understanding of adhesion, friction, and wear and accordingly of methods for their control are addressed.

Buckley, D. H.

Importance of formaldehyde in cloud chemistry

A physical-chemical model which is an extension of that of Hong and Carmichael (1983) is used to investigate the role of formaldehyde in cloud chemistry. This model takes into account the mass transfer of SO2, O3, NH3, HNO3, H2O2, CO2, HCl, HCHO, O2, OH and HO2 into cloud droplets and their subsequent chemical reactions. The model is used to assess the importance of S(IV)-HCHO adduct formation, the reduction of H2O2 by HCHO, HCHO-free radical interactions, and the formation of HCOOH in the presence of HCHO in cloud droplets. Illustrative calculations indicate that the presence of HCHO inhibits sulfate production rate in cloud droplets. The direct inhibition of sulfate production rate in cloudwater due to nucleophilic addition of HSO3(-) to HCHO(aq) to form hydroxymethanesulfonate is generally low for concentrations of HCHO typical of ambient air. However, inhibition of sulfate production due to formaldehyde-free radical interactions in solution can be important. These formaldehyde-free radical reactions can also generate appreciable quantities of formic acid.

Adewuyi, Y. G.

The relative importance of aerosol scattering and absorption in remote sensing

Previous attempts to explain the effect of aerosols on satellite measurements of surface properties for the visible and near-infrared spectrum have emphasized the amount of aerosols without consideration of their absorption properties. In order to estimate the importance of absorption, the radiances of the sunlight scattered from models of the earth-atmosphere system are computed as functions of the aerosol optical thickness and absorption. The absorption effect is small where the surface reflectance is weak, but is important for strong reflectance. These effects on classification of surface features, measuring vegetation index, and measuring surface reflectance are presented.

Fraser, R. S.

Low Reynolds number wind tunnel measurements - The importance of being earnest

A method for obtaining two-dimensional aerodynamic force coefficients at low Reynolds numbers using a three-component external platform balance is presented. Regardless of method, however, the importance of understanding the possible influence of the test facility and instrumentation on the final results cannot be overstated. There is an uncertainty in the ability of the facility to simulate a two-dimensional flow environment due to the confinement effect of the wind tunnel and the method used to mount the airfoil. Additionally, the ability of the instrumentation to accurately measure forces and pressures has an associated uncertainty. This paper focuses on efforts taken to understand the errors introduced by the techniques and apparatus used at the University of Notre Dame, and, the importance of making an earnest estimate of the uncertainty. Although quantitative estimates of facility induced errors are difficult to obtain, the uncertainty in measured results can be handled in a straightforward manner and provide the experimentalist, and others, with a basis to evaluate experimental results.

Mueller, Thomas J.

Improved importance sampling technique for efficient simulation of digital communication systems

A new, improved importance sampling (IIS) approach to simulation is considered. Some basic concepts of IS are introduced, and detailed evolutions of simulation estimation variances for Monte Carlo (MC) and IS simulations are given. The general results obtained from these evolutions are applied to the specific previously known conventional importance sampling (CIS) technique and the new IIS technique. The derivation for a linear system with no signal random memory is considered in some detail. For the CIS technique, the optimum input scaling parameter is found, while for the IIS technique, the optimum translation parameter is found. The results are generalized to a linear system with memory and signals. Specific numerical and simulation results are given which show the advantages of CIS over MC and IIS over CIS for simulations of digital communications systems.

Lu, Dingqing

Redistribution in astrophysically important hydrogen lines

Under typical solar chromospheric conditions for hydrogen radiators, strong collisions due to both electrons and ions are well separated in time, so that a binary collision theory for collisional redistribution is applicable. However, a simple impact approximation may not be used, but rather a unified type theory is required in which frequency dependent line shape parameters are used to describe both impact and quasi-static regions of the spectrum. In addition, correlated terms which describe absorption and emission during a collision are important, and, in fact, without correlated terms describing both transfer of excitation and emission during the same collision unphysical predictions (such as negative intensities) would be obtained. In this paper theory is specifically developed for the coupled Lyman-alpha, Lyman-beta, Hydrogen-alpha system, and equations of statistical equilibrium and absorption and emission coefficients are given. All correlated events are examined and emission during a collision is found to be important in the line wings. Stimulated emission and absorption is also included within a broadband approximation. The major approximation is to ignore lower state interaction. It is found that for Lyman-beta Raman-coupling with Hydrogen-alpha occurs and the overall scattering of radiation in the line wings is mostly coherent. In contrast, for Hydrogen-alpha, incoherent redistribution due to lower state radiative decay (which occurs even in the absence of collisions) is found to dominate the coherent scattering. Finally, in the Lyman series the dominant incoherent contribution is associated with cascade transitions and inelastic collisions between different principal quantum states.

Cooper, J.

MHD simulations of coronal mass ejections - Importance of the driving mechanism

The importance of the form of the driving mechanism in MHD simulations of coronal mass ejections is investigated. A model simulation problem is devised, and it is found that the use of a simple form for the initial corona, with an upward moving parcel of cold, dense plasma as the driving mechanism, can produce results that are consistent with many of the features observed by coronagraphs. The results imply that the nature of the driving mechanism may play an important role in determining the dynamical evolution of mass ejections.

Linker, J. A.

Importance of anisotropy on design of compression-loaded composite corrugated panels

An investigation is conducted of the importance of anisotropic terms in the design of composite corrugated panels, for a range of axial compressive load intensities. The two panel configurations treated were panels with tailored laminates and panels with a continuous laminate; both are of interest to aircraft designers and prone to anisotropic effects which are of as-yet undetermined extent. The importance of the anisotropic terms is measured by the difference between the design load and the buckling load obtained from the ultimate structural analysis.

Gurdal, Zafer

Theoretical studies of important processes in planetary and comet atmospheres

This is the fifth semi-annual progress report describing research on dissociative recombination reactions in planetary and comet atmospheres. The Appendix has two papers that describe NASA supported research. Both papers have been recently accepted for publication. The first paper, 'The Generation of O(S-1) from the Dissociative Recombination of O2(+)', describes in detail the Multichannel Quantum Defect (MQDT) theory used for the calculation of dissociative recombination (DR) cross sections and rates. The application to the generation of the upper state of the atomic oxygen green line emission is of great importance to the modelling of planetary atmospheres. The second paper in the Appendix, 'Dissociative Recombination of the Ground State of N2(+)', applies the methods described in the first paper to N2(+). We find remarkable agreement with the prior microwave afterglow experiments for both the total recombination rate and for its electron temperature dependence. However, the results disagree with recent merged beams results which gave cross sections that are a factor of five below the microwave afterglow experiments and the current results. DR of N2(+) is an important mechanism for generating energetic N atoms which can escape the atmosphere of Mars. Currently we are also continuing additional work on the DR of O2(+) which is aimed at calculating both the total DR rate as a function of ion vibrational level and the rate for production of O(D-1).

Guberman, Steven L.

The importance of short-term forecasting of thunderstorms to launch operations at Cape Canaveral

The local meteorological events leading up to the launch of the space shuttle Atlantis on 2 August 1991 were captured in full-resolution GOES visible data being archived for the Convection and Precipitation/Electrification Experiment. The postponement of the launch on 1 August, and the successful lift-off on the following day provide a good example of the important role played by nowcasting and short-term forecasting at Cape Canaveral. In this brief article, we discuss the local weather conditions prior to, during, and after the launch and demonstrate the importance of short-term forecasting capabilities around the cape during launch operations.

Cooper, Harry J.

Predissociation in N2(C'4, 1 Sigma u +) and other N2 states and its importance in the atmospheres of Titan and Triton

The objectives of this program are to further the understanding of the upper atmospheres of Titan, Triton, and the Earth in terms of the observed emissions of the 13-14 eV states of N2. These states are generated at quite high rates, yet very little emission is observed from them. The reasons are complex, involving resonance trapping and predissociation, and it is desired to quantify the effects of predissociation, particularly on the c(sub 4)' 1 Sigma(sub u),(sup +) state of N2. Earlier experiments had indicated that predissociation of the c(sub 4)' state was of little importance, yet over the last two years a growing body of evidence has shown that for levels above v = 2, predissociation is in fact a major process. It is the v = 0 level for which production by electron bombardment and photoexcitation is highest, and so it has been most important to evaluate the effects of predissociation on this particular level. The goal has been to target c(sub 4)' (v = 0) for a thorough analysis, in which both the extent of predissociation as a function of rotational level and the atomic product branching ratio, where the only possible products are N(4S) + N(4S) and N(2D) + N(4S), are determined. For the first year of funding, the intention was to demonstrate two-photon excitation of the intermediate N2(a(sup 1) Pi(sub g)) state, so that the gap to the 13 eV energy region could be bridged, and then use a second laser to reach the c(sub 4)' state itself.

Slanger, Tom G.