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Improving 3D reconstruction quality for root phenotyping: assessing the impact of camera calibration and imaging parameters

Arate 3D reconstruction is essential for high-throughput plant phenotyping, particularly for studying complex structures such as root systems. While photogrammetry and Structure from Motion (SfM) techniques have become widely used for 3D root imaging, the camera settings used are often underreported in studies, and the impact of camera calibration on model accuracyccu remains largely underexplored in plant science. In this study, we systematically evaluate the effects of focus, aperture, exposure time, and gain settings on the quality of 3D root models made with a multi-camera scanning system. We show through a series of experiments that calibration significantly improves model quality, with focus misalignment and shallow depth of field (DoF) being the most important factors affecting reconstruction accuracy. Our results further show that proper calibration has a greater effect on reducing noise than filtering it during post-processing, emphasizing the importance of optimizing image acquisition rather than relying solely on computational corrections. This work improves the repeatability and accuracy of 3D root imaging for phenotyping pipelines by giving useful calibration guidelines. This leads to better trait quantification for use in crop research and plant breeding in downstream analysis.

3D reconstruction↗

Cloud Screening and Quality Control Algorithm for Star Photometer Data: Assessment with Lidar Measurements and with All-sky Images

This paper presents the development and set up of a cloud screening and data quality control algorithm for a star photometer based on CCD camera as detector. These algorithms are necessary for passive remote sensing techniques to retrieve the columnar aerosol optical depth, delta Ae(lambda), and precipitable water vapor content, W, at nighttime. This cloud screening procedure consists of calculating moving averages of delta Ae() and W under different time-windows combined with a procedure for detecting outliers. Additionally, to avoid undesirable Ae(lambda) and W fluctuations caused by the atmospheric turbulence, the data are averaged on 30 min. The algorithm is applied to the star photometer deployed in the city of Granada (37.16 N, 3.60 W, 680 ma.s.l.; South-East of Spain) for the measurements acquired between March 2007 and September 2009. The algorithm is evaluated with correlative measurements registered by a lidar system and also with all-sky images obtained at the sunset and sunrise of the previous and following days. Promising results are obtained detecting cloud-affected data. Additionally, the cloud screening algorithm has been evaluated under different aerosol conditions including Saharan dust intrusion, biomass burning and pollution events.

data quality control algorithm↗

Quality Assessment of Landsat Surface Reflectance Products Using MODIS Data

Surface reflectance adjusted for atmospheric effects is a primary input for land cover change detection and for developing many higher level surface geophysical parameters. With the development of automated atmospheric correction algorithms, it is now feasible to produce large quantities of surface reflectance products using Landsat images. Validation of these products requires in situ measurements, which either do not exist or are difficult to obtain for most Landsat images. The surface reflectance products derived using data acquired by the Moderate Resolution Imaging Spectroradiometer (MODIS), however, have been validated more comprehensively. Because the MODIS on the Terra platform and the Landsat 7 are only half an hour apart following the same orbit, and each of the 6 Landsat spectral bands overlaps with a MODIS band, good agreements between MODIS and Landsat surface reflectance values can be considered indicators of the reliability of the Landsat products, while disagreements may suggest potential quality problems that need to be further investigated. Here we develop a system called Landsat-MODIS Consistency Checking System (LMCCS). This system automatically matches Landsat data with MODIS observations acquired on the same date over the same locations and uses them to calculate a set of agreement metrics. To maximize its portability, Java and open-source libraries were used in developing this system, and object-oriented programming (OOP) principles were followed to make it more flexible for future expansion. As a highly automated system designed to run as a stand-alone package or as a component of other Landsat data processing systems, this system can be used to assess the quality of essentially every Landsat surface reflectance image where spatially and temporally matching MODIS data are available. The effectiveness of this system was demonstrated using it to assess preliminary surface reflectance products derived using the Global Land Survey (GLS) Landsat images for the 2000 epoch. As surface reflectance likely will be a standard product for future Landsat missions, the approach developed in this study can be adapted as an operational quality assessment system for those missions.

Landsat↗

Software for Verifying Image-Correlation Tie Points

A computer program enables assessment of the quality of tie points in the image-correlation processes of the software described in the immediately preceding article. Tie points are computed in mappings between corresponding pixels in the left and right images of a stereoscopic pair. The mappings are sometimes not perfect because image data can be noisy and parallax can cause some points to appear in one image but not the other. The present computer program relies on the availability of a left- right correlation map in addition to the usual right left correlation map. The additional map must be generated, which doubles the processing time. Such increased time can now be afforded in the data-processing pipeline, since the time for map generation is now reduced from about 60 to 3 minutes by the parallelization discussed in the previous article. Parallel cluster processing time, therefore, enabled this better science result. The first mapping is typically from a point (denoted by coordinates x,y) in the left image to a point (x',y') in the right image. The second mapping is from (x',y') in the right image to some point (x",y") in the left image. If (x,y) and(x",y") are identical, then the mapping is considered perfect. The perfect-match criterion can be relaxed by introducing an error window that admits of round-off error and a small amount of noise. The mapping procedure can be repeated until all points in each image not connected to points in the other image are eliminated, so that what remains are verified correlation data.

Klimeck, Gerhard↗

Science Quality Assessment in Support of EOS MISR Data

The Multi-angle Imaging SpectroRadiometer (MISR) instrument, scheduled to fly on board the first Earth Observing System (EOS) spacecraft, will have a data stream that produces over 100 GB of data per day, once in full operation, of information about the Earth's atmosphere, clouds, and surface.

remote sensing Multi-angle Imaging SpectroRadiomet↗

Vision-based inspection of prefabricated components using camera poses: Addressing inherent limitations of image-based 3D reconstruction

Modular construction can lead to additional cost overruns and delays when a defect is found on the construction site and is not easily repairable. Researchers have developed various methods that use image-based 3D reconstruction for quality assessment, but they have inherent limitations, such as inconsistency and dealing with surfaces with reflectivity and limited visual features. Therefore, this paper presents a vision-based quality assessment method using cameras for prefabricated components by addressing these limitations. Specifically, this paper proposes a novel quality inspection method with sub-millimeter accuracy using cameras focused on leveraging camera poses (as opposed to 3D point clouds that are often not consistent in quality) from the image-based 3D reconstruction. The 3D point estimation by computing triangulation was used for achieving accurate measurement. The proposed method is validated using six different variances and two case studies – an aluminum pipe with a reflective surface and a fabricated concrete column. Furthermore, the results demonstrate the accuracy and effectiveness of the proposed method.

42 ENGINEERING↗

The Joint Agency Commercial Imagery Evaluation Team and Product Characterization Approach

The Joint Agency Commercial Imagery Evaluation (JACIE) team is a collaborative interagency group focused on the characterization of commercial remote sensing data products. The team members - the National Aeronautics and Space Administration (NASA), the National Imagery and Mapping Agency (NIMA), and the U.S. Geological Survey (USGS) - each have a vested interest in the purchase and use of commercial imagery to support government research and operational applications. For both research and applications, commercial products must be well characterized for precision, accuracy, and repeatability. Since commercial systems are built and operated with no government insight or oversight, the JACIE team provides an independent product characterization of delivered image and image-derived end products. End product characterization differs from the systems calibration approach that is typically used with government systems, where detailed system design information is available. The product characterization approach addresses three primary areas of product performance: geopositional accuracy, image quality, and radiometric accuracy. The JACIE team utilizes well-characterized test sites to support characterization activities. To characterize geopositional accuracy, the team utilizes sites containing several "photo-identifiable" targets and compares their precisely known locations with those defined by the commercial image product. In the area of image quality, spatial response is characterized using edge targets and pulse targets to measure edge response and to estimate image modulation transfer function. Additionally, imagery is also characterized using the National Imagery Interpretability Rating Scale, a means of quantifying the ability to identify certain targets (e.g., rail-cars, airplanes) within an image product. Radiometric accuracy is characterized using reflectance-based vicarious calibration methods at several uniform sites. Each JACIE agency performs an aspect of product characterization based on its area of expertise, thus minimizing duplication of effort. The JACIE team collaborated to perform comprehensive characterization of products from Space Imaging Inc.'s IKONOS satellite and from DigitalGlobe's QuickBird satellite and is currently characterizing products from OrbImage s OrbView-3. JACIE assessments have resulted in several improvements to commercial image product quality and have enhanced working relationships between government and industry. Assessment results are presented at an annual JACIE High Spatial Resolution Commercial Imagery Workshop.

Zanoni, Vicki↗

Development of X-Ray Computed Tomography Image Quality Indicators, "IQIs"

The intent of this effort, which is funded through the NASA OSMA NDE Program, is to develop a methodology and tools to assess Computed Tomography (CT) system performance. In particular, our team has fabricated Image Quality Indicators (IQIs) using materials and internal features useful for assessing CT detectability limits, contrast sensitivity, and resolution. Unlike traditional 2D radiography IQIs, those for CT should be more conducive to volumetric datasets and of uniform aspect ratio cross-sections.

Additive Manufacturing↗

Aerosol Source Plume Physical Characteristics from Space-based Multiangle Imaging

Models that assess aerosol effects on regional air quality and global climate parameterize aerosol sources in terms of amount, type, and injection height. The multiangle imaging spectroradiometer (MISR) aboard NASA's Terra satellite retrieves total column aerosol optical thickness (AOT), and aerosol type over cloud-free land and water. A stereo-matching algorithm automatically retrieves reflecting-layer altitude wherever clouds or aerosol plumes have discernable spatial contrast, with about 500-m accuracy, at 1.1-km horizontal resolution. Near-source biomass burning smoke, volcanic effluent, and desert dust plumes are observed routinely, providing information about aerosol amount, particle type, and injection height useful for modeling applications. Compared to background aerosols, the plumes sampled have higher AOT, contain particles having expected differences in Angstrom exponent, size, single-scattering albedo, and for volcanic plume and dust cloud cases, particle shape. As basic thermodynamics predicts, thin aerosol plumes lifted only by regional winds or less intense heat sources are confined to the boundary layer. However, when sources have sufficient buoyancy, the representative plumes studied tend to concentrate within discrete, high-elevation layers of local stability; the aerosol is not uniformly distributed up to a peak altitude, as is sometimes assumed in modeling. MISR-derived plume heights, along with meteorological profile data from other sources, make it possible to relate radiant energy flux observed by the moderate resolution imaging spectroradiometer (MODIS), also aboard the Terra spacecraft, to convective heat flux that plays a major role in buoyant plume dynamics. A MISR climatology of plume behavior based on these results is being developed.

aerosol plumes↗

The earth's surface studied from space; Proceedings of Workshop II of the COSPAR 25th Plenary Meeting, Graz, Austria, June 25-July 7, 1984

Consideration is given to: Landsat image data quality studies; a preliminary evaluation of Landsat-4 Thematic Mapper (TM) data for mineral exploration; and the early evaluation of TM data for mapping forest, agricultural and soil resources. Among other topics discussed are: shortwave infrared detection of vegetation; SPOT image quality and post-launch assessment; an evaluation of SPOT HRV simulation data for Corps of Engineers applications; and the application potential of SPOT imagery for topographic mapping. Consideration is also given to: verification studies of MOS-1 sensors; multiple sensor geocoded data; and the utility of proposed sensors for coastal engineering studies.

Ungar, S. G.↗

Interim report on Landsat national archive activities

The Department of the Interior (DOI) has the responsibility to preserve and to distribute most Landsat Thematic Mapper (TM) and Multispectral Scanner (MSS) data that have been acquired by the five Landsat satellites operational since July 1972. Data that are still covered by exclusive marketing rights, which were granted by the U.S. Government to the commercial Landsat operator, cannot be distributed by the DOI. As the designated national archive for Landsat data, the U.S. Geological Survey's EROS Data Center (EDC) has initiated two new programs to protect and make available any of the 625,000 MSS scenes currently archived and the 200,000 TM scenes to be archived at EDC by 1995. A specially configured system has begun converting Landsat MSS data from obsolete high density tapes (HDT's) to more dense digital cassette tapes. After transcription, continuous satellite swaths are (1) divided into standard scenes defined by a world reference system, (2) geographically located by latitude and longitude, and (3) assessed for overall quality. Digital browse images are created by subsampling the full-resolution swaths. Conversion of the TM HDT's will begin in the fourth quarter of 1992 and will be conducted concurrently with MSS conversion. Although the TM archive is three times larger than the entire MSS archive, conversion of data from both sensor systems and consolidation of the entire Landsat archive at EDC will be completed by the end of 1994. Some MSS HDT's have deteriorated, primarily as a result of hydrolysis of the pigment binder. Based on a small sample of the 11 terabytes of post-1978 MSS data and the 41 terabytes of TM data to be converted, it appears that to date, less than 2 percent of the data have been lost. The data loss occurs within small portions of some scenes; few scenes are lost entirely. Approximately 10,000 pre-1979 MSS HDT's have deteriorated to such an extent, as a result of hydrolysis, that the data cannot be recovered without special treatment of the tapes. An independent consulting division of a major tape manufacturer has analyzed affected tapes and is confident that restorative procedures can be applied to the HDT's to permit one pass to reproduce the data on another recording media. A system to distribute minimally processed Landsat data will be procured in 1992 and will be operational by mid-1994. Any TM or MSS data in the national archive that are not restricted by exclusive marketing rights will be reproduced directly from the archive media onto user specified computer-compatible media. TM data will be produced either at a raw level (radiometrically and geometrically uncorrected) or at an intermediate level (radiometrically corrected and geometrically indexed). MSS data will be produced to an intermediate level or to a fully corrected level (radiometrically corrected and geometrically transformed to an Oblique Mercator projection). The system will be capable of providing ordered scenes within 48 hours of receipt of order.

Boyd, John E.↗

In-Process Thermal Imaging of the Electron Beam Freeform Fabrication Process

Researchers at NASA Langley Research Center have been developing the Electron Beam Freeform Fabrication (EBF3) metal additive manufacturing process for the past 15 years. In this process, an electron beam is used as a heat source to create a small molten pool on a substrate into which wire is fed. The electron beam and wire feed assembly are translated with respect to the substrate to follow a predetermined tool path. This process is repeated in a layer-wise fashion to fabricate metal structural components. In-process imaging has been integrated into the EBF3 system using a near-infrared (NIR) camera. The images are processed to provide thermal and spatial measurements that have been incorporated into a closed-loop control system to maintain consistent thermal conditions throughout the build. Other information in the thermal images is being used to assess quality in real time by detecting flaws in prior layers of the deposit. NIR camera incorporation into the system has improved the consistency of the deposited material and provides the potential for real-time flaw detection which, ultimately, could lead to the manufacture of better, more reliable components using this additive manufacturing process.

Taminger, Karen M.↗

Missing Wedge Completion via Unsupervised Learning with Coordinate Networks

Cryogenic electron tomography (cryoET) is a powerful tool in structural biology, enabling detailed 3D imaging of biological specimens at a resolution of nanometers. Despite its potential, cryoET faces challenges such as the missing wedge problem, which limits reconstruction quality due to incomplete data collection angles. Recently, supervised deep learning methods leveraging convolutional neural networks (CNNs) have considerably addressed this issue; however, their pretraining requirements render them susceptible to inaccuracies and artifacts, particularly when representative training data is scarce. To overcome these limitations, we introduce a proof-of-concept unsupervised learning approach using coordinate networks (CNs) that optimizes network weights directly against input projections. This eliminates the need for pretraining, reducing reconstruction runtime by 3–20× compared to supervised methods. Our in silico results show improved shape completion and reduction of missing wedge artifacts, assessed through several voxel-based image quality metrics in real space and a novel directional Fourier Shell Correlation (FSC) metric. Our study illuminates benefits and considerations of both supervised and unsupervised approaches, guiding the development of improved reconstruction strategies.

42 ENGINEERING↗

Evaluation of the VIIRS Land Algorithms at Land PEATE

The Land Product Evaluation and Algorithm Testing Element (Land PEATE), a component of the Science Data Segment of the National Polar-orbiting Operational Environmental Satellite System (NPOESS) Preparatory Project (NPP), is being developed at the NASA Goddard Space Flight Center (GSFC). The primary task of the Land PEATE is to assess the quality of the Visible Infrared Imaging Radiometer Suite (VIIRS) Land data products made by the Interface Data Processing System (IDPS) using the Operational (OPS) Code during the NPP era and to recommend improvements to the algorithms in the IDPS OPS code. The Land PEATE uses a version of the MODIS Adaptive Processing System (MODAPS), NPPDAPS, that has been modified to produce products from the IDPS OPS code and software provided by the VIIRS Science Team, and uses the MODIS Land Data Operational Product Evaluation (LDOPE) team for evaluation of the data records generated by the NPPDAPS. Land PEATE evaluates the algorithms by comparing data products generated using different versions of the algorithm and also by comparing to heritage products generated from different instrument such as MODIS using various quality assessment tools developed at LDOPE. This paper describes the Land PEATE system and some of the approaches used by the Land PEATE for evaluating the VIIRS Land algorithms during the pre-launch period of the NPP mission and the proposed plan for long term monitoring of the quality of the VIIRS Land products post-launch.

Wolfe, Robert E.↗

Improving and Assessing the Quality of Uncertainty Quantification in Deep Learning

Deep learning (DL) models have enjoyed increased attention in recent years because of their powerful predictive capabilities. While many successes have been achieved, standard deep learning methods suffer from a lack of uncertainty quantification (UQ). While the development of methods for producing UQ from DL models is an active area of current research, little attention has been given to the quality of the UQ produced by such methods. In order to deploy DL models to high-consequence applications, high-quality UQ is necessary. This report details the research and development conducted as part of a Laboratory Directed Research and Development (LDRD) project at Sandia National Laboratories. The focus of this project is to develop a framework of methods and metrics for the principled assessment of UQ quality in DL models. This report presents an overview of UQ quality assessment in traditional statistical modeling and describes why this approach is difficult to apply in DL contexts. An assessment on relatively simple simulated data is presented to demonstrate that UQ quality can differ greatly between DL models trained on the same data. A method for simulating image data that can then be used for UQ quality assessment is described. A general method for simulating realistic data for the purpose of assessing a model’s UQ quality is also presented. A Bayesian uncertainty framework for understanding uncertainty and existing metrics is described. Research that came out of collaborations with two university partners are discussed along with a software toolkit that is currently being developed to implement the UQ quality assessment framework as well as serve as a general guide to incorporating UQ into DL applications.

97 MATHEMATICS AND COMPUTING↗

A Versatile Fiber Coating Process for Efficient Fabrication of Multifunctional Composites

The objective of this research is to demonstrate the versatility of a dip coating process for the efficient integration of piezoelectric barium titanate (BaTiO3) microparticles on a wide variety of fibers to design passive self-sensing composites. The microparticles were deposited on glass, aramid, and basalt fiber weaves through the proposed dip coating technique. A computational framework is established to predict the deposition thickness on the fiber surfaces from the given microparticle concentration, size, coating velocity, and coating fluid viscosity. The deposition quality assessment was performed through scanning electron microscope imaging and subsequent image analysis. BaTiO3-coated fibers were directly used in composite preparation. After fabrication, the BaTiO3-enhanced composites were subjected to high-voltage poling. Finally, their passive self-sensing properties were characterized through experimental studies. The results show the adaptability of the proposed coating process to integrate BaTiO3 microparticles within different types of fiber-reinforced composites enabling passive self-sensing to attain subsurface damage characterization.

Gupta, Sumit↗

A conceptual study of automatic and semi-automatic quality assurance techniques for round image processing

This report summarizes the results of a study conducted by Engineering and Economics Research (EER), Inc. under NASA Contract Number NAS5-27513. The study involved the development of preliminary concepts for automatic and semiautomatic quality assurance (QA) techniques for ground image processing. A distinction is made between quality assessment and the more comprehensive quality assurance which includes decision making and system feedback control in response to quality assessment.

Source record↗

Study of a water quality imager for coastal zone missions

The present work surveys water quality user requirements and then determines the general characteristics of an orbiting imager (the Applications Explorer, or AE) dedicated to the measurement of water quality, which could be used as a low-cost means of testing advanced imager concepts and assessing the ability of imager techniques to meet the goals of a comprehensive water quality monitoring program. The proposed imager has four spectral bands, a spatial resolution of 25 meters, and swath width of 36 km with a pointing capability of 330 km. Silicon photodetector arrays, pointing systems, and several optical features are included. A nominal orbit of 500 km altitude at an inclination of 50 deg is recommended.

Staylor, W. F.↗