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At least 55 records · Page 3

Accelerating Data Acquisition, Reduction, and Analysis at the Spallation Neutron Source

ORNL operates the world's brightest neutron source, the Spallation Neutron Source (SNS). Funded by the US DOE Office of Basic Energy Science, this national user facility hosts hundreds of scientists from around the world, providing a platform to enable break-through research in materials science, sustainable energy, and basic science. While the SNS provides scientists with advanced experimental instruments, the deluge of data generated from these instruments represents both a big data challenge and a big data opportunity. For example, instruments at the SNS can now generate multiple millions of neutron events per second providing unprecedented experiment fidelity but leaving the user with a dataset that cannot be processed and analyzed in a timely fashion using legacy techniques. To address this big data challenge, ORNL has developed a near real-time streaming data reduction and analysis infrastructure. The Accelerating Data Acquisition, Reduction, and Analysis (ADARA) system provides a live streaming data infrastructure based on a high-performance publish subscribe system, in situ data reduction, visualization, and analysis tools, and integration with a high-performance computing and data storage infrastructure. ADARA allows users of the SNS instruments to analyze their experiment as it is run and make changes to the experiment in real-time and visualize the results of these changes. In this paper we describe ADARA, provide a high-level architectural overview of the system, and present a set of use-cases and real-world demonstrations of the technology.

Campbell, Stuart I↗

Performance Modeling of In Situ Rendering

With the push to exascale, in situ visualization and analysis will continue to play an important role in high performance computing. Tightly coupling in situ visualization with simulations constrains resources for both, and these constraints force a complex balance of trade-offs. A performance model that provides an a priori answer for the cost of using an in situ approach for a given task would assist in managing the trade-offs between simulation and visualization resources. In this work, we present new statistical performance models, based on algorithmic complexity, that accurately predict the run-time cost of a set of representative rendering algorithms, an essential in situ visualization task. To train and validate the models, we conduct a performance study of an MPI+X rendering infrastructure used in situ with three HPC simulation applications. We then explore feasibility issues using the model for selected in situ rendering questions.

Larsen, Matthew↗

A high-performance workflow system for subsurface simulation

Subsurface modeling applications typically neglect uncertainty in the conceptual models, past or future scenarios, and attribute most or all uncertainty to errors in model parameters. In this contribution, uncertainty in technetium-99 transport in a heterogeneous, deep vadose zone is explored with respect to the conceptual model using a next generation user environment called Akuna. Akuna provides a range of tools to manage environmental modeling projects, from managing simulation data to visualizing results from high-performance computational simulators. Core toolsets accessible through the user interface include model setup, grid generation, parameter estimation, and uncertainty quantification. The BC Cribs site at Hanford in southeastern Washington State is used to demonstrate Akuna capabilities. At the BC Cribs site, conceptualization of the system is highly uncertain because only sparse information is available for the geologic conceptual model, the physical and chemical properties of the sediments, and the history of waste disposal operations. Using the Akuna toolset to perform an analysis of conservative solute transport, significant prediction uncertainty in simulated concentrations is demonstrated by conceptual model variation. This demonstrates that conceptual model uncertainty is an important consideration in sparse data environments such as BC Cribs. It is also demonstrated that Akuna and the underlying toolset provides an integrated modeling environment that streamlines model setup, parameter optimization, and uncertainty analyses for high-performance computing applications.

Akuna↗

ADIOS Visualization Schema: A First Step Towards Improving Interdisciplinary Collaboration in High Performance Computing

Scientific communities have benefitted from a significant increase of available computing and storage resources in the last few decades. For science projects that have access to leadership scale computing resources, the capacity to produce data has been growing exponentially. Teams working on such projects must now include, in addition to the traditional application scientists, experts in various disciplines including applied mathematicians for development of algorithms, visualization specialists for large data, and I/O specialists. Sharing of knowledge and data is becoming a requirement for scientific discovery, providing useful mechanisms to facilitate this sharing is a key challenge for e-Science. Our hypothesis is that in order to decrease the time to solution for application scientists we need to lower the barrier of entry into related computing fields. We aim at improving users' experience when interacting with a vast software ecosystem and/or huge amount of data, while maintaining focus on their primary research field. In this context we present our approach to bridge the gap between the application scientists and the visualization experts through a visualization schema as a first step and proof of concept for a new way to look at interdisciplinary collaboration among scientists dealing with big data. The key to our approach is recognizing that our users are scientists who mostly work as islands. They tend to work in very specialized environment but occasionally have to collaborate with other researchers in order to take full advantage of computing innovations and get insight from big data. We present an example of identifying the connecting elements between one of such relationships and offer a liaison schema to facilitate their collaboration.

Computer Science↗

Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT) Final Report

A partnership across government, academic, and private sectors has created a novel system that enables climate researchers to solve current and emerging data analysis and visualization challenges. The Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT) software project utilizes the Python application programming interface (API) combined with C/C++/Fortran implementations for performance-critical software that offers the best compromise between "scalability" and “ease-of-use.” The UV-CDAT system is highly extensible and customizable for high-performance interactive and batch visualization and analysis for climate science and other disciplines of geosciences. For complex, climate data-intensive computing, UV-CDAT’s inclusive framework supports Message Passing Interface (MPI) parallelism as well as taskfarming and other forms of parallelism. More specifically, the UV-CDAT framework supports the execution of Python scripts running in parallel using the MPI executable commands and leverages Department of Energy (DOE)-funded general-purpose, scalable parallel visualization tools such as ParaView and VisIt. This is the first system to be successfully designed in this way and with these features. The climate community leverages these tools and others, in support of a parallel client-server paradigm, allowing extreme-scale, server-side computing for maximum possible speed-up.

54 ENVIRONMENTAL SCIENCES↗

Paint and Click: Unified Interactions for Image Boundaries

Image boundaries are a fundamental component of many interactive digital photography techniques, enabling applications such as segmentation, panoramas, and seamless image composition. Interactions for image boundaries often rely on two complementary but separate approaches: editing via painting or clicking constraints. In this work, we provide a novel, unified approach for interactive editing of pairwise image boundaries that combines the ease of painting with the direct control of constraints. Rather than a sequential coupling, this new formulation allows full use of both interactions simultaneously, giving users unprecedented flexibility for fast boundary editing. To enable this new approach, we provide technical advancements. In particular, we detail a reformulation of image boundaries as a problem of finding cycles, expanding and correcting limitations of the previous work. Our new formulation provides boundary solutions for painted regions with performance on par with state-of-the-art specialized, paint-only techniques. In addition, we provide instantaneous exploration of the boundary solution space with user constraints. Finally, we provide examples of common graphics applications impacted by our new approach.

97 MATHEMATICS AND COMPUTING↗

Visualizing an Exascale Data Center Digital Twin: Considerations, Challenges and Opportunities

Digital twins are an excellent tool to model, visualize, and simulate complex systems, to understand and optimize their operation. In this work, we present the technical challenges of real-time visualization of a digital twin of the Frontier supercomputer.We show the initial prototype and current state of the twin and highlight technical design challenges of visualizing such a large High Performance Computing (HPC) system. The goal is to understand the use of augmented reality as a primary way to extract information and collaborate on digital twins of complex systems. This leverages the spatio-temporal aspect of a 3D representation of a digital twin, with the ability to view historical and real-time telemetry, triggering simulations of a system state and viewing the results, which can be augmented via dashboards for details. Finally, we discuss considerations and opportunities for augmented reality of digital twins of large-scale, parallel computers.

Maiterth, Matthias↗

A High Performance Computational Framework for Dynamic Security Assessment under Uncertainty

Dynamic security assessment (DSA) is a critical function to evaluate power grids’ capability to survive the transition caused by a set of disturbances to an acceptable steady-state condition. Its computational burden is heavy. With the challenges brought by renewable energy and new smart grid technologies, DSA under uncertainty has to be considered to study the impact of forecast errors on DSA simulation, which further increases the computational burden. To address this challenge, this paper presents a high performance computational framework to support DSA simulation user uncertainty. The computational framework aims to provide a seamless workflow that links data from high performance computing, statistical analysis, to visualization so that a problem can be easily expressed in a way compatible with different functions. It also enables software compatibility such that application development can be more efficient. Case study results of the ESCA60 system and a western U.S. size system show the advantages and efficiency of the computational framework.

dynamic security assessment, high performance comp↗

Vehicle detection based on visual attention mechanism and adaboost cascade classifier in intelligent transportation systems

Robust and efficient vehicle detection is an essential task in intelligent transportation systems (ITS). Unfortunately, due to a great diversity of vehicle profiles and outdoor illumination conditions, it is a challenge to detect vehicles effectively. This paper proposes a method for high-performance vehicle detection based on visual attention mechanism and AdaBoost cascade classifier. Our method constructs the structural Haar features and extracts the features of samples using structural Haar features and trains an AdaBoost cascade classifier. Then we use the visual attention mechanism to extract the target candidate region. At last, we generate detecting sub-windows in the candidate region and discriminate them with the cascade classifier to realize vehicle detection. We compare the performance of this method against two variants, one using MB–LBP features and another using Haar features. The experimental results demonstrate satisfactory performance for the proposed method in term of training speed, detecting speed and detecting accuracy.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

OptiBench: An Optimization Benchmark Tool for Renewable Energy Problems

We propose a benchmark framework and visualization tool, OptiBench, for analyzing the performance of state-of-the-art optimization solvers across a variety of optimization problems in renewable energy research. Our framework is designed from the ground up in the Julia programming language and enables analysis at scale on high performance computing (HPC) systems. Our visualization tool allows effortless evaluation of optimization solver performance, robustness, and accuracy through intuitive plots, e.g., performance profiles, heat maps, and distribution plots. We have tested three benchmark suites relevant to the modeling of renewable energy systems, viz., CUTEst, PGLib-OPF, and WaterTAP water treatment optimization problems. We illustrate benchmarking of CUTEst using OptiBench on the National Renewable Energy Laboratory's (NREL) HPC Kestrel. Our findings indicate that MA57 HSL linear solver demonstrated the best overall performance for an experimental IPOPT implementation. Our work is ongoing and we intend to add support for more optimization solvers and benchmark test suites in the future.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

OptiBench: An Optimization Benchmark Tool for Renewable Energy Problems

We propose a benchmark framework and visualization tool, OptiBench, for analyzing the performance of state-of-the-art optimization solvers across a variety of optimization problems in renewable energy research. Our framework is designed from the ground up in the Julia programming language and enables analysis at scale on high performance computing (HPC) systems. Our visualization tool allows effortless evaluation of optimization solver performance, robustness, and accuracy through intuitive plots, e.g., performance profiles, heat maps, and distribution plots. We have tested three benchmark suites relevant to the modeling of renewable energy systems, viz., CUTEst, PGLib-OPF, and WaterTAP water treatment optimization problems. We illustrate benchmarking of CUTEst using OptiBench on the National Laboratory of the Rockies's (NLR) HPC Kestrel. Our findings indicate that MA57 HSL linear solver demonstrated the best overall performance for an experimental IPOPT implementation. Our work is ongoing and we intend to add support for more optimization solvers and benchmark test suites in the future.

97 MATHEMATICS AND COMPUTING↗

Transforming Energy Through Computational Excellence: A View From NREL

At the National Renewable Energy Laboratory (NREL)—a U.S. Department of Energy laboratory—computational science, high-performance computing, applied mathematics, advanced computer science, visualization, and data play a pivotal role in advancing energy abundance, affordability, security, and reliability. From fundamental scientifc discovery to systems engineering and analysis, NREL researchers tackle market-relevant challenges to develop solutions for an independent energy system that is reliable, resilient and secure. Collaborative partnerships with industry, government, and academia ensure that our research remains cutting edge, impactful, applicable, and aligned with real-world energy needs. This special issue of Computing in Science & Engineering highlights exemplary NREL projects where computational tools and methodologies drive discovery and accelerate innovation in scalable and integrated energy systems. The featured articles explore the role of computational modeling, high-performance computing, generative AI, and adaptive computing in advancing independent energy solutions, optimizing sustainability research, and enhancing decision-making for energy solutions using a broad mix of energy technologies. Here, these contributions demonstrate how NREL’s computational research bridges the gap between theoretical advancements and practical implementation, emphasizing interdisciplinary collaboration and a commitment to innovation, with a focus on translating computational excellence into real-world impact, thus accelerate progress toward national energy goals. By showcasing cutting-edge research at the intersection of computational science and energy systems, this issue aims to inspire and inform researchers, practitioners, and policymakers dedicated to shaping a more reliable energy future.

97 MATHEMATICS AND COMPUTING↗

A Visual Analytics Framework for the Detection of Anomalous Call Stack Trees in High Performance Computing Applications

Anomalous runtime behavior detection is one of the most important tasks for performance diagnosis in High Performance Computing (HPC). Most of the existing methods find anomalous executions based on the properties of individual functions, such as execution time. However, it is insufficient to identify abnormal behavior without taking into account the context of the executions, such as the invocations of children functions and the communications with other HPC nodes. We improve upon the existing anomaly detection approaches by utilizing the call stack structures of the executions, which record rich temporal and contextual information. With our call stack tree (CSTree) representation of the executions, we formulate the anomaly detection problem as finding anomalous tree structures in a call stack forest. The CSTrees are converted to vector representations using our proposed stack2vec embedding. Structural and temporal visualizations of CSTrees are provided to support users in the identification and verification of the anomalies during an active anomaly detection process. Furthermore, three case studies of real-world HPC applications demonstrate the capabilities of our approach.

97 MATHEMATICS AND COMPUTING↗

G2PDeep-v2: A Web-Based Deep-Learning Framework for Phenotype Prediction and Biomarker Discovery for All Organisms Using Multi-Omics Data

Multi-omics data offers rich insights into complex traits across organisms, yet integrating and analyzing these datasets for phenotype prediction and marker discovery remains challenging. Researchers need accessible tools that combine deep learning, hyperparameter optimization, visualization, and downstream analysis in a unified web platform. To address this, we developed G2PDeep-v2, a web-based platform powered by deep learning for phenotype prediction and marker discovery from multi-omics data across a wide range of organisms, including humans and plants. The server provides multiple services for researchers to create deep-learning models through an interactive interface and train these models using an automated hyperparameter tuning algorithm on high-performance computing resources. Users can visualize the results of phenotype and markers predictions and perform Gene Set Enrichment Analysis for the significant markers to provide insights into the molecular mechanisms underlying complex diseases, conditions and other biological phenotypes being studied.

59 BASIC BIOLOGICAL SCIENCES↗

BigData Express: Toward Predictable, Schedulable, and High-Performance Data Transfer [PowerPoint]

Topics include: • BigData Express: a schedulable, predictable, and high-performance data transfer service – A peer-to-peer, scalable, and extensible data transfer model – A visually appealing, easy-to-use web portal – A high-performance data transfer engine – A time-constraint-based scheduler – On-demand provisioning of end-to-end network paths with guaranteed QoS – Robust and flexible error handling – CILogon-based security

97 MATHEMATICS AND COMPUTING↗

BigData Express: Toward Predictable, Schedulable, and High-Performance Data Transfer [Slides]

BigData Express: a schedulable, predictable, and high-performance data transfer service. A peer-to-peer, scalable, and extensible data transfer model; A visually appealing, easy-to-use web portal; A high-performance data transfer engine; On-demand provisioning of end-to-end network paths with guaranteed QoS; Robust and flexible error handling; CILogon-based security (certificate version); A rich set of REST APIs to support scientific workflows

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

NETL - Supercomputing: NETL Simulation Based Engineering User Center (SBEUC)

NETL's Simulation-Based Engineering User Center, or SBEUC, integrates one of the world's largest high-performance computers with an advanced visualization center. The SBEUC offers a collaborative environment among researchers at NETL sites and those working through the NETL-Regional University Alliance.

42 ENGINEERING↗

Pathways to a Sustainable Aviation Ecosystem: Flight DNA: An Anonymized Aviation Data Tool and Repository

The National Renewable Energy Laboratory (NREL) has deep experience developing secure, national data repositories, which it augments with analysis, technology and market expertise, high-performance computing, and innovative data visualization. By adapting the architecture of existing mobility databases (i.e., Fleet DNA, the Transportation Secure Data Center, the National Fuel Cell Technology Evaluation Center), NREL can build a powerful aviation data clearinghouse - Flight DNA - that helps stakeholders navigate the web of pitfalls and possibilities generated by new aviation technologies.

aviation↗