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Open Science for Plants in Space: Improvements in NASA's Open Science Data Repository

Upcoming deep space missions will rely on plants for crew and ecosystem health. Open access space biology data enables scientists to examine the biological responses of plants to ionizing radiation, altered gravity, elevated CO2, and many other abiotic stressors. NASA has declared 2023 as the ‘Year of Open Science’ and created a 5-year Transform to Open Science (TOPS) initiative designed to rapidly transform the agency toward an inclusive culture of open science. NASA’s Open Science Data Repository (OSDR) combines two databases, GeneLab and Ames Life Sciences Data Archive (ALSDA) to maximize access to standardized ‘omics (e.g., transcriptomics, proteomics) and phenotypic data (e.g., microscopy, biomass), respectively. Current OSDR standards include the ISA (Investigation-Study-Assay) experiment model, assay metadata configurations, and standardized terminology and ontologies. In 2024 OSDR will include a new suite of features for improved FAIR compliance including downloadable plant metadata templates, data submission tools and overall improved AI-readiness of plant datasets. AI/ML methods can be helpful tools to overcome the inherent challenges of space biology research (small sample size, sparse and heterogeneous data etc.). However these methods are built on an assumption of normalized and well-curated data. OSDR’s new curation tools will improve users ability to leverage ML and AI methods to model space biology data and better understand the complex effects of spaceflight on living systems across hierarchical biological levels. We look forward to sharing our advances with the spaceflight community.

FAIR

New Ways of Facilitating Improved Data Discovery and Access for NASA's Suborbital Earth Science Observations

NASA conducts field research in various Earth Science disciplines utilizing airborne and other non-satellite platforms to acquire in situ and remotely sensed observations indicative of physical processes across a range of scales. Field efforts are key in the development and validation of instruments and satellite algorithm refinements. The heterogeneous data, with a range of file formats, scales, and acquisition methods, support research in several science areas. NASA’s archive process assigns data products to discipline-oriented Distributed Active Archive Centers (DAACs) for stewardship. Over time, individual DAACs have developed tools for data browsing and serving disparate user bases. As science becomes more interdisciplinary, researchers need to incorporate observations from multiple campaigns, and multiple DAACs, into their work. Motivated in part by this shifting paradigm of needs, the Catalog of Archived Suborbital Earth Science Investigations (CASEI) was created. CASEI provides a single starting point to browse, search, and discover airborne and field data. Contextual metadata are organized and inter-linked allowing intuitive, integrated exploration across all NASA DAACs. Campaign science objectives, platform and instrument configurations, geographical details, geophysical concepts, and more are tracked in CASEI’s database, facilitating multi-parameter search, browse, and discovery of relevant data products. Researchers are able to directly access associated data products, via DOI links, regardless of the DAAC where they reside. Significant events, key time periods of high science interest within the longer-duration campaign effort, are also indicated and allow for a more efficient identification of critical data subsets. This presentation describes CASEI’s development, intensive metadata curation process, and demonstrates the web interface experience. Initial content metrics and plans for continued maintenance will also be discussed.

metadata

An Analysis of Earth Science Data Analytics Use Cases

The increase in the number and volume, and sources, of globally available Earth science data measurements and datasets have afforded Earth scientists and applications researchers unprecedented opportunities to study our Earth in ever more sophisticated ways. In fact, the NASA Earth Observing System Data Information System (EOSDIS) archives have doubled from 2007 to 2014, to 9.1 PB (Ramapriyan, 2009; and https:earthdata.nasa.govaboutsystem-- performance). In addition, other US agency, international programs, field experiments, ground stations, and citizen scientists provide a plethora of additional sources for studying Earth. Co--analyzing huge amounts of heterogeneous data to glean out unobvious information is a daunting task. Earth science data analytics (ESDA) is the process of examining large amounts of data of a variety of types to uncover hidden patterns, unknown correlations and other useful information. It can include Data Preparation, Data Reduction, and Data Analysis. Through work associated with the Earth Science Information Partners (ESIP) Federation, a collection of Earth science data analytics use cases have been collected and analyzed for the purpose of extracting the types of Earth science data analytics employed, and requirements for data analytics tools and techniques yet to be implemented, based on use case needs. ESIP generated use case template, ESDA use cases, use case types, and preliminary use case analysis (this is a work in progress) will be presented.

data analytics

NERVA materials development

Materials development topics include: development of analysis techniques to adjust heterogeneous data; determination of thermal conductivity for AISI 347 stainless steel and elastic moduli and Poisson's ratio for Inconel 718 and Ti 5Al-2.5Sn; embrittlement effects of 1400 psi gaseous hydrogen for alloy 718 and Ti 5Al-2.5Sn; cryogenic radiation damage of Ti 5Al-2.5Sn; and evaluation of prepreg, impregnation, and fabric materials for optimum fibrous graphite properties. Component support topics include: tensile design allowable development of Ti 5Al-2.5Sn for turbopump applications; evaluation of fatigue, fracture toughness, and stress corrosion properties of AA 7039-T63 for pressure vessel applications; development of AISI 347 sheet tensile and creep properties for nozzle applications; evaluation of orbital weld techniques for aluminum line fabrication; material selection of shield materials; development of high load friction and wear properties of hard chrome/gold plate combinations; and evaluation of weld processes for NASS duct coolant channel fabrication.

Mandell, B.

Treatment of geodetic leveling in the integrated geodesy approach

Integrated geodesy is a method in which a wide variety of surveying measurements are modeled in terms of geometric positions and the earth's geopotential. Using heterogeneous data, both geometric and gravimetric quantities are simultaneously estimated by a least-squares procedure. Heretofore, geodetic leveling differences were reduced into pseudo-observables using assumed values of gravity prior to their inclusion into integrated geodesy least-squares adjustments. The errors in estimates of geometric and gravimetric quantities obtained from integrated geodesy adjustments of geodetic leveling difference, potential differences and Helmert height differences are compared.

Milbert, Dennis G.

DNET: A communications facility for distributed heterogeneous computing

This document describes DNET, a heterogeneous data communications networking facility. DNET allows programs operating on hosts on dissimilar networks to communicate with one another without concern for computer hardware, network protocol, or operating system differences. The overall DNET network is defined as the collection of host machines/networks on which the DNET software is operating. Each underlying network is considered a DNET 'domain'. Data communications service is provided between any two processes on any two hosts on any of the networks (domains) that may be reached via DNET. DNET provides protocol transparent, reliable, streaming data transmission between hosts (restricted, initially to DECnet and TCP/IP networks). DNET also provides variable length datagram service with optional return receipts.

Tole, John

SIMBAD quality-control

The astronomical database SIMBAD developed at the Centre de donnees astronomiques de Strasbourg presently contains 760,000 objects (stellar and non-stellar). It has the unique characteristic of being structured specifically for astronomical objects. All types of heterogeneous data (bibliographic references, measurements, and sets of identification) are connected with each object. The attributes that define quality of the database include the following. Reliability: cross-identification should not rely upon just exact values object coordinates. It also means that information attached to one simple object should be consistent. The existing data must be controlled in order to start with a reliable base and to cross-identify new data assuring the quality as data grows. Exhaustivity: delays between publication of new informations and their inclusion in the database should be as short as possible. The integrity of the database has to be maintained as data accumulates. Taking the amount of data into consideration and the rate of new data production, it is necessary to use automatic methods. One of the possibilities is to use multivariate data analysis. The factor-space is a n-dimensional relevancy space which is described by the n-axes representing a set of n subject matter headings; the words and phrases can be used to scale the axes and the documents are then a vector average of the terms within them. The application reported herein is based on the NASA-STI bibliographical database. The selected data concern astronomy, astrophysics, and space radiation (102,963 references from 1975 to 1991 included 8070 keywords). The F-space is built from this bibliographical data. By comparing the F-space position obtained from the NASA-STI keywords with the F-space position obtained from the SIMBAD references, the authors will be able to show whether it is possible to retrieve information with a restricted set of words only. If the comparison is valid, this will be a way to enter bibliographic information in the SIMBAD quality control process. Furthermore, it is possible to connect the physical measurements of stars from SIMBAD to literature concerning these stars from the NASA-STI abstracts. The physical properties of stars (e.g. UBV colors) are not randomly distributed. Stars are distributed among different clusters in a physical parameter space. The authors will show that there are some relations between this classification and the literature concerning these objects clusters in a factor space. They will investigate the nature of the relationship between the SIMBAD measurements and the bibliography. These would be new relationships that are not pre-established by an astronomer. In addition, the bibliography could be neutral information that can be used in combination with the measured parameters.

Lesteven, Soizick

Automated Classification of ROSAT Sources Using Heterogeneous Multiwavelength Source Catalogs

We describe an on-line system for automated classification of X-ray sources, ClassX, and present preliminary results of classification of the three major catalogs of ROSAT sources, RASS BSC, RASS FSC, and WGACAT, into six class categories: stars, white dwarfs, X-ray binaries, galaxies, AGNs, and clusters of galaxies. ClassX is based on a machine learning technology. It represents a system of classifiers, each classifier consisting of a considerable number of oblique decision trees. These trees are built as the classifier is 'trained' to recognize various classes of objects using a training sample of sources of known object types. Each source is characterized by a preselected set of parameters, or attributes; the same set is then used as the classifier conducts classification of sources of unknown identity. The ClassX pipeline features an automatic search for X-ray source counterparts among heterogeneous data sets in on-line data archives using Virtual Observatory protocols; it retrieves from those archives all the attributes required by the selected classifier and inputs them to the classifier. The user input to ClassX is typically a file with target coordinates, optionally complemented with target IDs. The output contains the class name, attributes, and class probabilities for all classified targets. We discuss ways to characterize and assess the classifier quality and performance and present the respective validation procedures. Based on both internal and external validation, we conclude that the ClassX classifiers yield reasonable and reliable classifications for ROSAT sources and have the potential to broaden class representation significantly for rare object types.

McGlynn, Thomas

An Ecological Forecasting Agent

The project goals are: Make data analysis faster and cheaper. Increase use of NASA data by removing barriers to data access. Cope with data heterogeneity. Support code reuse and rapid application development. Support multiple applications, users. Including fire and health domains. Improve QOS. Always provide an answer. Tell user how good it is, where it come from.

Golden, Keith

Adding Hierarchical Objects to Relational Database General-Purpose XML-Based Information Managements

NETMARK is a flexible, high-throughput software system for managing, storing, and rapid searching of unstructured and semi-structured documents. NETMARK transforms such documents from their original highly complex, constantly changing, heterogeneous data formats into well-structured, common data formats in using Hypertext Markup Language (HTML) and/or Extensible Markup Language (XML). The software implements an object-relational database system that combines the best practices of the relational model utilizing Structured Query Language (SQL) with those of the object-oriented, semantic database model for creating complex data. In particular, NETMARK takes advantage of the Oracle 8i object-relational database model using physical-address data types for very efficient keyword searches of records across both context and content. NETMARK also supports multiple international standards such as WEBDAV for drag-and-drop file management and SOAP for integrated information management using Web services. The document-organization and -searching capabilities afforded by NETMARK are likely to make this software attractive for use in disciplines as diverse as science, auditing, and law enforcement.

Lin, Shu-Chun

Bridging the Last Mile with Open-Source Advancements: Empowering Communities through Fusion of Aerosol Optical Depth (AOD) Products from Multi-Satellite Sensors

Aerosol Optical Depth (AOD) is a crucial parameter for understanding atmospheric aerosol distribution and their impact on climate and air quality. With the growing number of Earth observation satellites, there is an abundance of AOD products derived from various sensors onboard both geostationary and low-orbit satellites. The availability of multiple datasets provides an opportunity to harness the strengths of each sensor and create comprehensive and accurate AOD datasets for climate and air quality studies at different temporal and spatial scales. Our NASA aerosol MEaSURES project has made significant strides in recent years by undertaking the ambitious task of developing an open-source package tailored for fusing AOD products from different sources. The package is based on OOP (Object-Oriented Programming) design and is implemented in Python modules. Generic interfaces enable easy inclusion of large and heterogeneous data. The package may be utilized to produce harmonized AOD datasets with enhanced spatial and temporal coverage. The latest version of the package is able to process and integrate the dark-target AOD data from six different sensors: AHI Himawari-8, ABI GOES-West, ABI GOES-East, MODIS AQUA, MODIS TERRA, and VIIRS SNPP. Rigorous validation and intercomparison studies have been performed to assess the accuracy and reliability of the fused AOD product against ground-based measurements and reference datasets. The open-source nature of the developed package ensures transparency, reproducibility, and community engagement. The research community and stakeholders can access, contribute to, and further improve the fusion methodology, making it adaptable to other studies, or expanding it to include new satellite data as they become available. In this poster presentation, we will introduce the accomplishments and challenges faced during the development of the open-source package for AOD data fusion, and demonstrate the advantages of combining AOD products from the six aforementioned satellite sensors. The presentation aims to foster discussions, collaborations, and future directions in integrating Earth observation and remote sensing data, which may contribute to a better understanding of atmospheric aerosols and their impacts on our environment.

Zhaohui Zhang

Issues and Solutions for Bringing Heterogeneous Water Cycle Data Sets Together

The water cycle research community has generated many regional to global scale products using data from individual NASA missions or sensors (e.g., TRMM, AMSR-E); multiple ground- and space-based data sources (e.g., Global Precipitation Climatology Project [GPCP] products); and sophisticated data assimilation systems (e.g., Land Data Assimilation Systems [LDAS]). However, it is often difficult to access, explore, merge, analyze, and inter-compare these data in a coherent manner due to issues of data resolution, format, and structure. These difficulties were substantiated at the recent Collaborative Energy and Water Cycle Information Services (CEWIS) Workshop, where members of the NASA Energy and Water cycle Study (NEWS) community gave presentations, provided feedback, and developed scenarios which illustrated the difficulties and techniques for bringing together heterogeneous datasets. This presentation reports on the findings of the workshop, thus defining the problems and challenges of multi-dataset research. In addition, the CEWIS prototype shown at the workshop will be presented to illustrate new technologies that can mitigate data access roadblocks encountered in multi-dataset research, including: (1) Quick and easy search and access of selected NEWS data sets. (2) Multi-parameter data subsetting, manipulation, analysis, and display tools. (3) Access to input and derived water cycle data (data lineage). It is hoped that this presentation will encourage community discussion and feedback on heterogeneous data analysis scenarios, issues, and remedies.

Acker, James

A Comparison of FIFE Observation with GEOS Assimilated Data Including a Heterogeneous LSM

Several recent studies have shown that much can be learned by comparing grid-point data from a data assimilation system with in-situ observations from field experiments. While the surface heterogeneity is acknowledged in these studies, they lack quantitative representations of the influence of heterogeneity on the near-surface meteorology and surface hydrologic and energy balance. Here, we use the Betts and Ball FIFE site-averaged data. Standard deviations of the site-average will provide an estimate of the FIFE site heterogeneity. Recently, the Mosaic Land-Surface Model (LSM) has been incorporated into the Goddard Earth Observing System (GEOS) Data Assimilation System (DAS). The Mosaic LSM computes the surface energy and hydrologic balance for nine distinct surface types at each grid-point. Each surface type is proportionally weighted to determine the mean grid point properties. Hence, we can compare modeled and observed grid-point variability in addition to the mean properties. Also, assimilated data sets created with and without the LSM are compared. The results indicate the importance of including quantitative estimates of heterogeneity in the analysis of the land surface hydrology and energy balances in assimilation systems.

Bosilovich, M.

Problems related to the determination of land surface parameters and fluxes over heterogeneous media from satellite data

Problems encountered in the definition of relevant parameters which can describe heterogeneous media as a whole are discussed. A procedure to extend the definition of parameters from local to regional scales via inversion of appropriate models is tentatively proposed. The adequacy of these models for describing physical processes at the earth/atmosphere interface as observed with satellite systems is addressed.

Becker, F.

Development of a Heterogeneous sUAS High-Accuracy Positional Flight Data Acquisition System

Recently, a heterogeneous FDAS, consisting of a diverse range of instruments was developed to support acoustic flight research programs at NASA Langley Research Center. In addition to a conventional GPS to measure latitude, longitude and altitude, the FDAS also utilizes a small, light-weight, low-cost DGPS system to obtain centimeter accuracy to measure the distance traveled by sound from a sUAS vehicle to a microphone on the ground. Acoustic flight testing using the FDAS installed on several different sUAS platforms has been conducted in support of the NASA CAS DELIVER and ERA ITD projects (Reference 1). The first FDAS prototype was assembled and implemented in the acoustic/flight measurement system in December 2014 to support DELIVER acoustic flight tests. Evaluation of the system performance and results from the data analyses were used to further test, develop and enhance the FDAS over a six-month period to support acoustic flight research for the ERA.

McSwain, Robert G.

Automated Traffic Management System and Method

A data management system and method that enables acquisition, integration, and management of real-time data generated at different rates, by multiple heterogeneous incompatible data sources. The system achieves this functionality by using an expert system to fuse data from a variety of airline, airport operations, ramp control, and air traffic control tower sources, to establish and update reference data values for every aircraft surface operation. The system may be configured as a real-time airport surface traffic management system (TMS) that electronically interconnects air traffic control, airline data, and airport operations data to facilitate information sharing and improve taxi queuing. In the TMS operational mode, empirical data shows substantial benefits in ramp operations for airlines, reducing departure taxi times by about one minute per aircraft in operational use, translating as $12 to $15 million per year savings to airlines at the Atlanta, Georgia airport. The data management system and method may also be used for scheduling the movement of multiple vehicles in other applications, such as marine vessels in harbors and ports, trucks or railroad cars in ports or shipping yards, and railroad cars in switching yards. Finally, the data management system and method may be used for managing containers at a shipping dock, stock on a factory floor or in a warehouse, or as a training tool for improving situational awareness of FAA tower controllers, ramp and airport operators, or commercial airline personnel in airfield surface operations.

Glass, Brian J.

Real-Time Surface Traffic Adviser

A real-time data management system which uses data generated at different rates by multiple heterogeneous incompatible data sources are presented. In one embodiment, the invention is as an airport surface traffic data management system (traffic adviser) that electronically interconnects air traffic control, airline, and airport operations user communities to facilitate information sharing and improve taxi queuing. The system uses an expert system to fuse dam from a variety of airline, airport operations, ramp control, and air traffic control sources, in order to establish, predict, and update reference data values for every aircraft surface operation.

Brian J Glass