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43 records · Page 3

Chemical Recommender System: Replacement Suggestions for Small Molecules

The Chemical Recommender System (CRS) is an open-source, high-performance toolkit that enables real-time similarity searches across the complete PubChem database (over 50 million molecules) using commodity hardware. The CRS addresses critical limitations in existing chemical informatics platforms through a novel vector database infrastructure, extensible model integration capabilities, and complete algorithmic transparency. The system implements a vector database deployment with partitioned indexing that achieves a ~60x speedup over traditional approaches. A containerized model integration framework allows researchers to seamlessly incorporate custom predictive models into the full-scale search and scoring pipeline, while complete configurability of search parameters, filtering logic, and scoring functions provides capabilities not available in existing black-box solutions. Beyond structural similarity, the CRS integrates OPERA QSAR models for thermophysical and toxicity predictions, RDKit synthetic accessibility scoring, and user-defined models to compute weighted final replacement scores. The complete system is accessible through an interactive web application supporting real-time progress monitoring, post-processing score re-weighting, automated PDF reporting, and batch processing capabilities.

Nair, Parthiv Anand [Sandia National Laboratories ↗

DiskSat: Demonstration Mission for a Two-Dimensional Satellite Architecture

The DiskSat is a quasi-two-dimensional satellite bus architecture designed for applications requiring high power, large apertures, and/or high maneuverability in a low-mass satellite. A representative DiskSat structure is a composite flat panel, one meter in diameter and 2.5 cm thick. The volume is almost 20 liters, equivalent to a hypothetical 20U CubeSat, while the structural mass is less than 3 kg. The surface area is large enough to host over 200 W of solar cells without deployable solar panels. For launch, multiple DiskSats are stacked in a fully enclosed container/deployer using a simple mechanical interface and are released individually in orbit. The Aerospace Corporation, with the support of the NASA Space Technology Mission Directorate (STMD), is preparing a flight of four DiskSats for launch in 2024 to demonstrate the feasibility of both the dispenser and the DiskSat bus. In addition, the flight is expected to demonstrate several features of the DiskSat including the unprecedented high power-to-mass ratio, the maneuverability of the bus using low-thrust electric propulsion, and the ability to fly continuously in a low-drag orientation, enabling operations in very low Earth orbits (VLEO). The DiskSats will be launched in and deployed from a dispenser that provides a containerized rideshare environment; the dispenser fully encloses the DiskSats during launch and then opens to dispense the satellites one at a time once in orbit. The dispenser is modular in design and expandable from the capacity of four DiskSats for this flight to as many as 20 DiskSats for future flights. NASA STMD seeks disruptive and innovative technologies that could help lead to the next-generation systems for future science and exploration missions. DiskSat is a potentially disruptive technology leading to new, enabling architectures using ever-more capable small spacecraft. Data generated from this flight will inform the drafting of a DiskSat standard intended to encourage easy and frequent access to space, in the same manner as the CubeSat standard. DiskSat is expected to become a standard format for rideshare-compatible, high-power, maneuverable, low-mass satellites for Earth-orbit, cis-lunar, and deep space applications.

Richard Welle↗

Evaluating Network Performance of Containerized Test Framework for Distributed Space Systems

Distributed space systems are a mission architecture consisting of multiple spacecraft as a cohesive system which provide multipoint sampling, increased mission coverage, or improved sample resolution, while reducing mission risk through redundancy. To fully realize the potential of these systems, eventually scaling to hundreds or thousands of spacecraft, distributed space systems need to be operated as a single entity, which will enable a variety of novel scientific space missions. The Distributed Spacecraft Autonomy (DSA) project is a software project which aims to mature the technology needed for those systems, namely autonomous decision-making and swarm networking. The DSA project leverages a containerized swarm test framework to simulate spacecraft software, which can identify emergent behavior early in development. Container virtualization allows distributed spacecraft systems to be simulated entirely in software on a single computer, avoiding the overhead associated with conventional approaches like hardware facsimiles and virtual machines. For this approach to be effective, the simulated system behavior must not be artificially influenced by the swarm test framework itself. To address this, we present a series of benchmarks to quantify virtual network bandwidth available on a single-host computer and contextualize this against the network and application behavior of the DSA swarm test framework.

Distributed Spacecraft Autonomy↗

Sample Sealing Approaches for Mars Sample Return Caching

Objective ot this project was to investigate sealing methods for encapsulating samples in 1 cm diameter thin-walled sample tubes applicable to future proposed Mars Sample Return Techniques implemented include a spring energized Teflon sleeve plug, a crimped tube seal, a heat-activated shape memory alloy plug, a shape memory alloy activated cap, a solder-based plug, and a solder-based cap

Mars Sample Return (MSR) mission↗

Transitioning a Flexible and Scalable Satellite Ground Station Observation Network (GSON) Framework to an Operational Environment

Obtaining accurate and timely satellite observations is of paramount importance in fields like disaster management, weather diagnoses/forecasting, and Earth Sciences remote sensing. Stored mission data (SMD), from low Earth orbiting (LEO) satellite sensors, provides important observations for these fields and applications, however data access to SMD can be delayed from one and half hours to three hours from the time the observations were made. This data latency poses a significant impact on data product optimal use. We developed a Ground Station Observation Network (GSON) that utilizes commercial ground station as a service (GSaaS) providers to acquire low latency direct broadcast (DB) data from AQUA, SNPP, and JPSS-1 satellites using antennas located in strategic locations around the world. We will discuss techniques to improve the deployment efficiency and code reliability and quality of the GSON framework. Topics include right-sizing and containerization of the code to facilitate integration and adaptation with continuous delivery (CD) pipeline, locating non-code assets in referenceable repositories separated from code, adaptation of pipelines as code and simplification of CD, intersecting with code quality tests and checks as part of the pipeline execution and deployment, and establishing distributed repositories, registries, and system identities in a way that mitigates compromise to the CD pipeline. These techniques enable deployment of processing systems that are both highly specific but also dynamically modifiable. This new class of system allows for a flexible and scalable deployment while avoiding the “black box” issues that can plague large system deployments.

cluster↗

Virtual Framework for Development and Testing of Federation Software Stack

Softwarization of networked infrastructures combined with containerization of codes promises unprecedented computing capabilities distributed across the federations of computing systems and physical instruments. The development and testing of a software stack that implements these capabilities over an expensive physical production infrastructure is not cost-effective, and in the early stages, may potentially cause service disruptions. To address these aspects, we develop the Virtual Federated Science Instrument Environment (VFSIE), a digital twin of the physical infrastructure that emulates a multi-site federation. Each federated site is emulated using containers and virtual hosts that are connected over local-area networks, and the sites, in turn, are connected over an emulated wide-area network. We describe the framework design and implementation details. We also illustrate its application by emulating a federation of four laboratories that use Jupyter Notebook for computations and the EPICS software system for instrument control.

Al Najjar, Anees↗

Biomass Harmonization and SAR Analysis with the Multi-mission Algorithm and Analysis Platform (MAAP)

The Multi‐mission Algorithm and Analysis Platform (MAAP) is a collaborative effort between NASA and the European Space Agency (ESA) to support above ground biomass (AGB) research in an open science framework. MAAP brings together relevant data, algorithms, and computing capabilities in a common cloud environment to address the challenges of sharing and processing data from field, airborne and satellite measurements. MAAP was publicly released in October 2021, providing computing capabilities co-located with the data, a collaborative coding and analysis environment, and a set of interoperable tools and algorithms developed to support the estimation and visualization of data. MAAP has allowed scientists from both North America and Europe to collaborate on the generation and analysis/visualization of data derived from multiple, discipline-adjacent missions in an open, collaborative environment that has reached beyond traditional scientific investigation. MAAP has been used to support multiple scientific activities. To date, existing LiDAR data from multiple platforms has been calibrated with field measurements and combined for more comprehensive and accurate estimates of above ground biomass AGB; these LiDAR platforms include airborne (e.g. LVIS), the International Space Station (NASA’s Global Ecosystem Dynamics Investigation (GEDI), and satellites (e.g. ICESat-2). The current challenge is to effectively and seamlessly combine the aforementioned LiDAR-based data with new data sources such as P-band RADAR from ESA’s upcoming BIOMASS mission, existing ESA Sentinel-1 C-band SAR, and the 30 PB/yr of high cadence global coverage L-band SAR data from the upcoming NASA-ISRO SAR (NISAR) mission. Recent analysis using MAAP merged ICESat-2 and optical data (Harmonized Landsat Sentinel) produced the most comprehensively precise estimate of boreal-wide AGB to date. Another effort using MAAP is the production and open distribution of global comparisons of AGB map estimates, including from ICESat-2 and GEDI, to bolster stakeholder uptake for policy applications. These map estimates will feed into the Intergovernmental Panel on Climate Change (IPCC) database, likely aiding the next Global Carbon Stocktake of the UNFCCC. Furthermore, the biomass retrieval intercomparison exercise BRIX-2 could benefit from the MAAP providing standardized test cases (based on airborne campaign and spaceborne data) allowing the community to develop and apply retrieval algorithms based on these test cases, while forthcoming SAR data training curricula could also use the MAAP as a teaching and learning platform. The MAAP is meeting the challenges inherent in international, open science collaboration and large scale computing with a platform that is entirely open source and cloud native, using open standards for data access, manipulation, protocols, and formats. The MAAP data system consists of a dedicated data store whose data is indexed in an online catalog conforming to established metadata, application programmatic interfaces (APIs), and service interface standards, using an implementation of the open sourced NASA Common Metadata Repository. Federation of user identities allows users from either NASA or ESA to access and consume services from the other using a unified metadata catalog for the data utilized across the ESA and NASA MAAP platforms. Similarly, we are exploring how to increase interoperability to achieve a common approach to packaging, orchestrating and executing algorithms, with interoperable access to data for subsetting, fast browse, and cloud-optimized access, all using interoperable standards such as those from the Open Geospatial Consortium (OGC). Designed for interoperability, ESA and NASA utilize a common architecture for the software platform. It provides a cloud-based algorithm development environment (ADE) that enables scientists to develop algorithms collaboratively with access to the MAAP data catalog as well as other data archives. MAAP provides an Eclipse Che-based ADE supporting both Python and R languages, popular in this biomass community. Algorithms developed and containerized within the ADE can be deployed to run to thousands of computational nodes in the MAAP’s data processing system (DPS), dramatically speeding up processing and giving scientists a rapid, iterative turnaround of results. NASA’s implementation of the DPS is based on the Hybrid Science Data System (HySDS) framework, used by NASA flight projects to produce Earth science standard products.

cloud computing↗