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At least 55 records · Page 3

Multigenic resistance to Xylella fastidiosa in wild grapes ( Vitis sps.) and its implications within a changing climate

Xylella fastidiosa is a bacterium that infects crops like grapevines, coffee, almonds, citrus and olives. There is little understanding of the genes that contribute to plant resistance, the genomic architecture of resistance, and the potential role of climate in shaping resistance, in part because major crops like grapevines (Vitis vinifera) are not resistant to the bacterium. Here we study a wild grapevine species, V. arizonica, that segregates for resistance. Using genome-wide association, we identify candidate resistance genes. Resistance-associated kmers are shared with a sister species of V. arizonica but not with more distant species, suggesting that resistance evolved more than once. Finally, resistance is climate dependent, because individuals from low (< 10 °C) temperature locations in the wettest quarter were typically susceptible to infection, likely reflecting a lack of pathogen pressure in colder climates. In fact, climate is as effective a predictor of resistance phenotypes as some genetic markers. We extend our climate observations to additional crops, predicting that increased pathogen pressure is more likely for grapevines and almonds than some other susceptible crops.

60 APPLIED LIFE SCIENCES↗

Patterns and controls on island‐wide aboveground biomass accumulation in second‐growth forests of Puerto Rico

Abstract Understanding the heterogeneity of biomass accumulation in second‐growth tropical forests following land use abandonment is important for informing ecosystem carbon models and forest restoration efforts. There is an urgent need for a broad sample of second‐growth forests to enhance our knowledge of carbon accumulation in human‐dominated landscapes, especially for older forests. Puerto Rico has predominantly second‐growth forests, ranging in age from approximately 25 to more than 80 years. We used an island‐wide sample of airborne lidar from the NASA Goddard Lidar, Hyperspectral, and Thermal (G‐LiHT) Airborne Imager collected on March 2017, forest inventory data, and data on forest age, precipitation, soils, and land use to estimate aboveground biomass stocks in moist and wet, second‐growth tropical forests. Biomass accumulation rates in Puerto Rico were lower, on average, than in other Neotropical forests. Median biomass across >16,700 ha of older second‐growth forests was 105 Mg ha −1 , and sampled biomass rarely surpassed 250 Mg ha −1 . Differences in biomass by age were large and persistent across different substrates and land uses, with a plateau in the pattern of island‐wide biomass accumulation after about 33 years. A spatial regression model showed that multiple factors were related to biomass accumulation, including time since abandonment, geologic substrate, past land use as coffee or pasture, precipitation, topographic wetness index, and slope. Our findings have important consequences for the total carbon storage and expected climate mitigation benefits of large‐scale reforestation efforts, and highlight the value of airborne lidar for quantifying biomass variability in complex tropical landscapes. Abstract in Spanish is available with online material.

54 ENVIRONMENTAL SCIENCES↗

Longitudinal Effects on Plant Species Involved in Agriculture and Pandemic Emergence Undergoing Changes in Abiotic Stress

In this work we identify changes in high-resolution zones across the globe linked by environmental similarity that have implications for agriculture, bioenergy, and zoonosis. We refine exhaustive vector comparison methods with improved similarity metrics as well as provide multiple methods of amalgamation across 744 months of climatic data. The results of the vector comparison are captured as networks which are analyzed using static and longitudinal comparison methods to reveal locations around the globe experiencing dramatic changes in abiotic stress. Specifically we (i) incorporate updated similarity scores and provide a comparison between similarity metrics, (ii) implement a new feature for resource optimization, (iii) compare an agglomerative view to a longitudinal view, (iv) compare across 2-way and 3-way vector comparisons, (v) implement a new form of analysis, and (vi) demonstrate biological applications and discuss implications across a diverse set of species distributions by detecting changes that affect their habitats. Species of interest are related to agriculture (e.g., coffee, wine, chocolate), bioenergy (e.g., poplar, switchgrass, pennycress), as well as those living in zones of concern for zoonotic spillover that may lead to pandemics (e.g., eucalyptus, flying foxes).

Cashman, Mikaela↗

Novel viruses of the family Partitiviridae discovered in Saccharomyces cerevisiae

It has been 49 years since the last discovery of a new virus family in the model yeast Saccharomyces cerevisiae . A large-scale screen to determine the diversity of double-stranded RNA (dsRNA) viruses in S . cerevisiae has identified multiple novel viruses from the family Partitiviridae that have been previously shown to infect plants, fungi, protozoans, and insects. Most S . cerevisiae partitiviruses (ScPVs) are associated with strains of yeasts isolated from coffee and cacao beans. The presence of partitiviruses was confirmed by sequencing the viral dsRNAs and purifying and visualizing isometric, non-enveloped viral particles. ScPVs have a typical bipartite genome encoding an RNA-dependent RNA polymerase (RdRP) and a coat protein (CP). Phylogenetic analysis of ScPVs identified three species of ScPV, which are most closely related to viruses of the genus Cryspovirus from the mammalian pathogenic protozoan Cryptosporidium parvum . Molecular modeling of the ScPV RdRP revealed a conserved tertiary structure and catalytic site organization when compared to the RdRPs of the Picornaviridae . The ScPV CP is the smallest so far identified in the Partitiviridae and has structural homology with the CP of other partitiviruses but likely lacks a protrusion domain that is a conspicuous feature of other partitivirus particles. ScPVs were stably maintained during laboratory growth and were successfully transferred to haploid progeny after sporulation, which provides future opportunities to study partitivirus-host interactions using the powerful genetic tools available for the model organism S . cerevisiae .

59 BASIC BIOLOGICAL SCIENCES↗

2022 LaserNetUS Users' Meeting

Organized and funded in 2018 through the US Department of Energy, Office of Fusion Energy Sciences (FES), LaserNetUS was created to provide vastly improved access to unique lasers for researchers. LaserNetUS is a network of ten high-power laser facilities, both academic and national laboratories, across the United States and Canada. These labs operate many of the premier mid- to large-scale high-intensity laser facilities in the US and Canada that are designed to be used in pioneering experimental studies in high energy density plasma and high field optical science. The network’s principal goal is to provide access to these state-of-the-art laser facilities to a broad range of researchers in the US and abroad. In its over four years of operation, LaserNetUS has awarded beamtime for over 60 user experiments to researchers from 25 different institutions. Over 400 user scientists, many of whom are students and post-docs, have participated in experiments at LaserNetUS facilities so far. The network now has over 1250 members. The LaserNetUS institutions are Colorado State University, Lawrence Berkeley National Lab, Lawrence Livermore National Lab, SLAC National Lab, The Ohio State University, University of Michigan, University of Nebraska-Lincoln, Institut National de la Recherche Scientifique, University of Rochester, and University of Texas at Austin. LaserNetUS hosted its first in-person Annual Users’ Meeting at Colorado State University in Fort Collins, CO, Aug 16-18, 2022. The meeting had 158 attendees, including 39 sponsored students and post-docs whose attendance and travel to the meeting were covered by DOE funds. Attendees included the 2018 Nobel Laureate in Physics, Donna Strickland. The program consisted of 5 plenary talks and several invited and contributed talks, a user community forum, a poster session, and built-in time for networking. The event focused on students and early career professionals. The poster session was held in combination with a reception to facilitate discussions and maximize interactions between the participants. The 39 sponsored students each presented a poster at the poster session, giving them valuable practice in sharing their research with others in the field. Many students and postdocs also gave talks during the main programming. Lunch and coffee breaks were provided for attendees for the duration of the conference on CSU’s campus. This allowed for networking among all participants. The building used to host the conference also had plenty of seating outside the auditorium, which was conducive to smaller one-on-one meetings and discussions between participants. There was also a lab tour of CSU’s Advanced Beam Laboratory. The day before and after the conference also included satellite meetings for the lab PIs and the Scientific Advisory Board. DOE support was used for rental of the auditorium and supporting rooms, student participation, 50% of the food costs, and transportation to the Advanced Beam Lab.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Hydra: Computer Vision for Data Quality Monitoring

Hydra: Computer Vision for Data Quality Monitoring Mar 13, 2024, 4:15 PM 30m Charles B. Wang Center, Stony Brook University Poster Track 1: Computing Technology for Physics Research Poster session with coffee break Speaker Ayan Roy Description Hydra is an extensible framework for training, managing, and deploying machine learning models for near real-time data quality monitoring. It is designed to take some of the burden off of shift crews by providing ‘round-the-clock’ monitoring of plots representing the data being collected. The Hydra system is backed by a database which is leveraged for near push button training and is primarily controlled and viewed through a set of web interfaces. This web interface contains a simple-to-use web based GUI for labeling of the datasets used in training; making it possible to label thousands of images quickly and efficiently. To aid in the analysis of Hydra inferences gradCAM, a method of interpretability, is performed and overlaid on the target image, highlighting regions of interest, making diagnosis of problems much faster. Development began in 2019 for the GlueX Experiment in Hall-D, the Hydra system has grown to encompass all of the experimental halls at Jefferson Laboratory. This talk will focus on the features of Hydra as well as provide details of the challenges present with deploying to disparate experimental halls. With a roadmap of development established, Hydra aims to continue to grow in richness of feature set and expand to encompass other monitoring tasks in differing communities.

Roy, Ayan↗

Optimal Design of Food Packaging Considering Waste Management Technologies to Achieve Circular Economy

Plastic packaging plays a fundamental role in the food industry, avoiding food waste and facilitating food access. The increasing plastic production and the lack of appropriate plastic waste management technologies represent a threat to the environmental and human welfare. Therefore, there is an urgent need to identify sustainable packaging solutions. Circular economy (CE) promotes reducing waste and increasing recycling practices to achieve sustainability. In this work, we propose a CE framework based on multi-objective optimization, considering both economic and environmental impacts, to identify optimal packaging designs and waste management technologies. Using mixed-integer linear programming (MILP), techno-economic analysis (TEA), and life cycle assessment (LCA), this work aims to build the first steps in packaging design, informing about the best packaging alternatives and the optimal technology or technologies to process packaging waste. For the economic analysis, we consider the minimum increase in price (MIP) when adding recycling to the cost of each packaging solution, while for the environmental analysis, the greenhouse gas emissions impact was considered. A case study on ground coffee packaging is used to illustrate the proposed framework. The results demonstrate that the multilayer bag option is the most convenient when considering both the chosen economic and environmental impacts.

Life Cycle Analysis↗

SITCOMTN-148: LSST Camera Electro-Optical Test (Run 7) Results

This note collects results from the LSST Camera electro-optical testing prior to installation on the TMA. We describe the focal plane characterization, optimization, and the resulting default settings. Results from eo-pipe are shown for standard runs such as B-protocols, Dense and SuperDense PTCs, gain stability, OpSim runs of Darks, and Darks with variable delays. We also describe features such as e2v Persistence, ITL phosphorescence in coffee stains, remnant charge near Serial register following saturated images, vampire pixels, ITL dips, and other sensor features.

79 ASTRONOMY AND ASTROPHYSICS↗

Quantile-dependent expressivity of plasma adiponectin concentrations may explain its sex-specific heritability, gene-environment interactions, and genotype-specific response to postprandial lipemia

“Quantile-dependent expressivity” occurs when the effect size of a genetic variant depends upon whether the phenotype (e.g. adiponectin) is high or low relative to its distribution. We have previously shown that the heritability ( h 2 ) of adiposity, lipoproteins, postprandial lipemia, pulmonary function, and coffee and alcohol consumption are quantile-specific. Whether adiponectin heritability is quantile specific remains to be determined. Plasma adiponectin concentrations from 4,182 offspring-parent pairs and 1,662 sibships from the Framingham Heart Study were analyzed. Quantile-specific heritability from offspring-parent (β OP , h 2 = 2 β OP /(1 + r spouse )) and full-sib regression slopes ( β FS , h 2 = {(1 + 8r spouse β FS ) 0.05 -1}/(2r spouse )) were robustly estimated by quantile regression with nonparametric significance assigned from 1,000 bootstrap samples. Quantile-specific h 2 (± SE) increased with increasing percentiles of the offspring’s age- and sex-adjusted adiponectin distribution when estimated from β OP ( P trend = 2.2 × 10 -6 ): 0.30 ± 0.03 at the 10th, 0.33 ± 0.04 at the 25th, 0.43 ± 0.04 at the 50th, 0.55 ± 0.05 at the 75th, and 0.57 ± 0.08 at the 90th percentile, and when estimated from β FS (P trend = 7.6 × 10 -7 ): 0.42 ± 0.03 at the 10th, 0.44 ± 0.04 at the 25th, 0.56 ± 0.05 at the 50th, 0.73 ± 0.08 at the 75th, and 0.79 ± 0.11 at the 90th percentile. Consistent with quantile-dependent expressivity, adiponectin’s: (1) heritability was greater in women in accordance with their higher adiponection concentrations; (2) relationships to ADIPOQ polymorphisms were modified by adiposity in accordance with its adiponectin-lowering effect; (3) response to rosiglitazone was predicted by the 45T> G ADIPOQ polymorphism; (4) difference by ADIPOQ haplotypes increased linearly with increasing postprandial adiponectin concentrations. Adiponectin heritability is quantile dependent, which may explain sex-specific heritability, gene-environment and gene-drug interactions, and postprandial response by haplotypes.

Postprandial↗

Quantile-dependent expressivity of serum C-reactive protein concentrations in family sets

“Quantile-dependent expressivity” occurs when the effect size of a genetic variant depends upon whether the phenotype (e.g., C-reactive protein, CRP) is high or low relative to its distribution. We have previously shown that the heritabilities ( h 2 ) of coffee and alcohol consumption, postprandial lipemia, lipoproteins, leptin, adiponectin, adiposity, and pulmonary function are quantile-specific. Whether CRP heritability is quantile-specific is currently unknown. Methods Serum CRP concentrations from 2,036 sibships and 6,144 offspring-parent pairs were analyzed from the Framingham Heart Study. Quantile-specific heritability from full-sib (β FS , h 2 ={(1 + 8r spouse β FS ) 0.5 - 1}/(2r spouse )) and offspring-parent regression slopes (β OP , h 2 = 2β OP /(1 + r spouse )) were estimated robustly by quantile regression with nonparametric significance determined from 1,000 bootstrap samples. Results Quantile-specific h 2 (±SE) increased with increasing percentiles of the offspring’s age- and sex-adjusted CRP distribution when estimated from β OP ( P trend = 0.0004): 0.02 ± 0.01 at the 10th, 0.04 ± 0.01 at the 25th, 0.10 ± 0.02 at the 50th, 0.20 ± 0.05 at the 75th, and 0.33 ± 0.10 at the 90th percentile, and when estimated from β FS ( P trend = 0.0008): 0.03±0.01 at the 10th, 0.06 ± 0.02 at the 25th, 0.14 ± 0.03 at the 50th, 0.24 ± 0.05 at the 75th, and 0.53 ± 0.21 at the 90th percentile. Conclusion Heritability of serum CRP concentration is quantile-specific, which may explain or contribute to the inflated CRP differences between CRP (rs1130864, rs1205, rs1800947, rs2794521, rs3091244), FGB (rs1800787), IL-6 (rs1800795, rs1800796), IL6R (rs8192284), TNF- α (rs1800629) and APOE genotypes following CABG surgery, stroke, TIA, curative esophagectomy, intensive periodontal therapy, or acute exercise; during acute coronary syndrome or Staphylococcus aureus bacteremia; or in patients with chronic rheumatoid arthritis, diabetes, peripheral arterial disease, ankylosing spondylitis, obesity or inflammatory bowel disease or who smoke.

59 BASIC BIOLOGICAL SCIENCES↗

Development of far infrared attenuation to measure electron densities in cw pin discharge lasers

A two beam attenuation technique was devised to measure electron densities 10 to the 9th power to 10 to the 11th power cm/3 resolved to 1 cm, in a near atmospheric COFFEE laser discharge, using 496 micrometer and 1,220 micrometer radiations from CH3F, optically pumped by a CO2 laser. A far infrared generator was developed which was suitable except for a periodic intensity variation in FIR output deriving from frequency variation of the pump radiation.

Babcock, R. V.↗

Landsat - Current and future capabilities for agriculture

The potential of the Landsat spacecraft in applications related to agriculture is demonstrated by the examples of assessing the damage to the Brazilian coffee crop due to freezing temperatures on July 17-18, 1975; and damage assessment in the state of Iowa, following a tornado which struck a corn and soybean producing region on June 13, 1976. Some techniques which have been used to measure snow covers on the basis of Landsat data are also noted. The advantages that are expected to accrue from the installation of sophisticated equipment on the third and fourth Landsat spacecraft, scheduled to be launched in 1978 and 1981, respectively, are reviewed.

Walter, L. S.↗

Use of LANDSAT-1 data for the detection and mapping of saline seeps in Montana

The author has identified the following significant results. April, May, and August are the best times to detect saline seeps. Specific times within these months would be dependent upon weather, phenology, and growth conditions. Saline seeps can be efficiently and accurately mapped, within resolution capabilities, from merged May and August LANDSAT 1 data. Seeps were mapped by detecting salt crusts in the spring and indicator plants in the fall. These indicator plants were kochia, inkweed, and foxtail barley. The total hectares of the mapped saline seeps were calculated and tabulated. Saline seeps less than two hectares in size or that have linear configurations less than 200 meters in width were not mapped using the LANDSAT 1 data. Saline seep signatures developed in the Coffee Creek test site were extended to map saline seeps located outside this area.

May, G. A.↗

Remote sensing data applied to the evaluation of soil erosion caused by land-use. Ribeirao Anhumas Basin Area: A case study

Formerly covered by a tropical forest, the study area was deforested in the early 40's for coffee plantation and cattle raising, which caused intense gully erosion problems. To develop a method to analyze the relationship between land use and soil erosion, visual interpretations of aerial photographs (scale 1:25.000), MSS-LANDSAT imagery (scale 1:250,000), as well as automatic interpretation of computer compatible tapes by IMAGE-100 system were carried out. From visual interpretation the following data were obtained: land use and cover tapes, slope classes, ravine frequency, and a texture sketch map. During field work, soil samples were collected for texture and X-ray analysis. The texture sketch map indicate that the areas with higher slope angles have a higher susceptibilty to the development of gullies. Also, the over carriage of pastureland, together with very friable lithologies (mainly sandstone) occuring in that area, seem to be the main factors influencing the catastrophic extension of ravines in the study site.

Dejesusparada, N.↗

Market assessment of photovoltaic power systems for agricultural applications in Colombia

The market potential for photovoltaic systems in the agricultural sector of Colombia is assessed. Consideration was given to over twenty specific livestock production, crop production, and rural services applications requiring less than 15 kW of power without backup power. Analysis revealed that near-term potential exists for photovoltaic technology in applications in coffee depulging, cattle watering, rural domestic users, rural water supply and small irrigation, rural telephones, rural health posts, and vaccine refrigeration. Market size would be in the 1200 to 2500 kWp range in the 1981 to 86 timeframe. Positive factors influencing the market size include a lack of electrical services, potential for developing the Llanos Orientales Territory, high fuel costs in remote areas, balance of system availability, the presence of wealthy land owners, and a large government-sponsored contract for photovoltaic (PV)-powered rural telephone systems. The anticipated eligibility of photovoltaic equipment for loans would be a further positive factor in market potential. Important negative factors include relatively inexpensive energy in developed locations, reliance on hydropower, lack of familiarity with PV equipment, a lack of financing, and established foreign competition in PV technology. Recommendations to American PV manufacturers attempting to develop the Colombian market are given.

Steigelmann, W.↗

Device for Extracting Flavors and Fragrances

Machine for making coffee and tea in weightless environment may prove even more valuable on Earth as general extraction apparatus. Zero-gravity beverage maker uses piston instead of gravity to move hot water and beverage from one chamber to other and dispense beverage. Machine functions like conventional coffeemaker during part of operating cycle and includes additional features that enable operation not only in zero gravity but also extraction under pressure in presence or absence of gravity.

Chang, F. R.↗

Propellers And Fans Based On The Moebius Strip

Moebius strip proposed as basis for optimally shaped airplane and boat propellers, fans, helicopter rotors, mixing screws, coffee grinders, and concrete mixers. Basic idea of optimal shaping of such device to increase working efficiency by increasing area for capture of still medium without increasing power needed for rotation.

Seiner, John Milton↗

Lessons Learned from NASA UAV Science Demonstration Program Missions

During the summer of 2002, two airborne missions were flown as part of a NASA Earth Science Enterprise program to demonstrate the use of uninhabited aerial vehicles (UAVs) to perform earth science. One mission, the Altus Cumulus Electrification Study (ACES), successfully measured lightning storms in the vicinity of Key West, Florida, during storm season using a high-altitude Altus(TM) UAV. In the other, a solar-powered UAV, the Pathfinder Plus, flew a high-resolution imaging mission over coffee fields in Kauai, Hawaii, to help guide the harvest.

Wegener, Steven S.↗