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At least 55 records · Page 3

Robust root clustering for linear uncertain systems using generalized Lyapunov theory

Consideration is given to the problem of matrix root clustering in subregions of a complex plane for linear state space models with real parameter uncertainty. The nominal matrix root clustering theory of Gutman & Jury (1981) using the generalized Liapunov equation is extended to the perturbed matrix case, and bounds are derived on the perturbation to maintain root clustering inside a given region. The theory makes it possible to obtain an explicit relationship between the parameters of the root clustering region and the uncertainty range of the parameter space.

Yedavalli, R. K.↗

Fuzzy modeling based on generalized neural networks and fuzzy clustering objective functions

An approach to the formulation of fuzzy if-then rules based on clustering objective functions is proposed. The membership functions are then calibrated with the generalized neural networks technique to achieve a desired input-output mapping. The learning procedure is basically a gradient-descent algorithm. A Kalman filter algorithm is used to improve the overall performance.

Sun, Chuen-Tsai↗

A Multiple Sphere T-Matrix Fortran Code for Use on Parallel Computer Clusters

A general-purpose Fortran-90 code for calculation of the electromagnetic scattering and absorption properties of multiple sphere clusters is described. The code can calculate the efficiency factors and scattering matrix elements of the cluster for either fixed or random orientation with respect to the incident beam and for plane wave or localized- approximation Gaussian incident fields. In addition, the code can calculate maps of the electric field both interior and exterior to the spheres.The code is written with message passing interface instructions to enable the use on distributed memory compute clusters, and for such platforms the code can make feasible the calculation of absorption, scattering, and general EM characteristics of systems containing several thousand spheres.

Mackowski, D. W.↗

Combining Planck and SPT Cluster Catalogs: Cosmological Analysis and Impact on the Planck Scaling Relation Calibration

We provide the first combined cosmological analysis of the South Pole Telescope (SPT) and Planck cluster catalogs. The aim is to provide an independent calibration for Planck scaling relations, exploiting the cosmological constraining power of the SPT-SZ cluster catalog and its dedicated weak lensing (WL) and X-ray follow-up observations. We build a new version of the Planck cluster likelihood. In the νΛ CDM scenario, focusing on the mass slope and mass bias of Planck scaling relations, we find ${\alpha }_{\mathrm{SZ}}={1.49}_{-0.10}^{+0.07}$ and ${\left(1-b\right)}_{\mathrm{SZ}}={0.69}_{-0.14}^{+0.07}$, respectively. The results for the mass slope show a ~4 σ departure from the self-similar evolution, α SZ ~ 1.8. This shift is mainly driven by the matter density value preferred by SPT data, Ωm = 0.30 ± 0.03, lower than the one obtained by Planck data alone, ${{\rm{\Omega }}}_{m}={0.37}_{-0.06}^{+0.02}$. The mass bias constraints are consistent both with outcomes of hydrodynamical simulations and external WL calibrations, (1 – b) ~ 0.8, and with results required by the Planck cosmic microwave background cosmology, (1 – b) ~ 0.6. From this analysis, we obtain a new catalog of Planck cluster masses M 500 . We estimate the ratio between the published Planck M SZ masses and our derived masses M 500 , as a "measured mass bias," ${\left(1-b\right)}_{M}$. We analyze the mass, redshift, and detection noise dependence of ${\left(1-b\right)}_{M}$, finding an increasing trend toward high redshift and low mass. These results mimic the effect of departure from self-similarity in cluster evolution, showing different dependencies for the low-mass, high-mass, low-z, and high-z regimes.

79 ASTRONOMY AND ASTROPHYSICS↗

Determining the Optimal Number of Clusters with the Clustergram

Cluster analysis aids research in many different fields, from business to biology to aerospace. It consists of using statistical techniques to group objects in large sets of data into meaningful classes. However, this process of ordering data points presents much uncertainty because it involves several steps, many of which are subject to researcher judgment as well as inconsistencies depending on the specific data type and research goals. These steps include the method used to cluster the data, the variables on which the cluster analysis will be operating, the number of resulting clusters, and parts of the interpretation process. In most cases, the number of clusters must be guessed or estimated before employing the clustering method. Many remedies have been proposed, but none is unassailable and certainly not for all data types. Thus, the aim of current research for better techniques of determining the number of clusters is generally confined to demonstrating that the new technique excels other methods in performance for several disparate data types. Our research makes use of a new cluster-number-determination technique based on the clustergram: a graph that shows how the number of objects in the cluster and the cluster mean (the ordinate) change with the number of clusters (the abscissa). We use the features of the clustergram to make the best determination of the cluster-number.

Fluegemann, Joseph K.↗

FPDeep: Scalable Acceleration of CNN Training on Deeply-Pipelined FPGA Clusters

In this paper, we propose a framework called FPDeep, which uses a hybrid of model and layer paral- lelism to configure distributed reconfigurable clusters to train DNNs. This approach has numerous benefits. First, the design does not suffer from batch size growth. Second, novel workload and weight partitioning leads to balanced loads of both among nodes. And third, the entire system is fine-grained pipeline. This leads to high parallelism and utilization and also minimizes the time features need to be cached while waiting for back-propagation.

Wang, Tianqi↗

State of the Art in Time‐Dependent Flow Topology: Interpreting Physical Meaningfulness Through Mathematical Properties

Abstract We present a state‐of‐the‐art report on time‐dependent flow topology. We survey representative papers in visualization and provide a taxonomy of existing approaches that generalize flow topology from time‐independent to time‐dependent settings. The approaches are classified based upon four categories: tracking of steady topology, reference frame adaption, pathline classification or clustering, and generalization of critical points. Our unique contributions include introducing a set of desirable mathematical properties to interpret physical meaningfulness for time‐dependent flow visualization, inferring mathematical properties associated with selective research papers, and utilizing such properties for classification. The five most important properties identified in the existing literature include coincidence with the steady case, induction of a partition within the domain, Lagrangian invariance, objectivity, and Galilean invariance.

Bujack, Roxana↗

NGC 1275 and the Perseus cluster - The formation of optical filaments in cooling gas in X-ray clusters

The paper generalizes previous discussions of the steady-flow models by allowing for the effects of angular momentum, which may be important in the central cooled regions of rich clusters of galaxies. The thermal stability of the flow is studied in a general way by relaxing the assumption that the perturbations comove. It is found that they are only unstable for a restricted range of initial parameters. Situations in which cold filaments can form are considered, and the subsequent evolution and excitation of such filaments are discussed. An estimate of the mass-to-light ratio of NGC 1275 is obtained by comparing the obtained results with the low-velocity filamentation system surrounding NGC 1275 in the Perseus cluster. Finally, the various aspects of cooling accretion flows in clusters are summarized.

Cowie, L. L.↗

Constraints on the Energy Density Content of the Universe Using Only Clusters of Galaxies

We demonstrate that it is possible to constrain the energy content of the Universe with high accuracy using observations of clusters of galaxies only. The degeneracies in the cosmological parameters are lifted by combining constraints from different observables of galaxy clusters. We show that constraints on cosmological parameters from galaxy cluster number counts as a function of redshift and accurate angular diameter distance measurements to clusters are complementary to each other and their combination can constrain the energy density content of the Universe well. The number counts can be obtained from X-ray and/or SZ (Sunyaev-Zeldovich effect) surveys, the angular diameter distances can be determined from deep observations of the intra-cluster gas using their thermal bremsstrahlung X-ray emission and the SZ effect (X-SZ method). In this letter we combine constraints from simulated cluster number counts expected from a 12 deg2 SZ cluster survey and constraints from simulated angular diameter distance measurements based on using the X-SZ method assuming an expected accuracy of 7% in the angular diameter distance determination of 70 clusters with redshifts less than 1.5. We find that R, can be determined within about 25%, A within 20%, and w within 16%. Any cluster survey can be used to select clusters for high accuracy distance measurements, but we assumed accurate angular diameter distance measurements for only 70 clusters since long observations are necessary to achieve high accuracy in distance measurements. Thus the question naturally arises: How to select clusters of galaxies for accurate diameter distance determinations? In this letter, as an example, we demonstrate that it is possible to optimize this selection changing the number of clusters observed, and the upper cut off of their redshift range. We show that constraints on cosmological parameters from combining cluster number counts and angular diameter distance measurements, as opposed to general expectations, will not improve substantially selecting clusters with redshifts higher than one. This important conclusion allow us to restrict our cluster sample to clusters closer than one, in a range where the observational time for accurate distance measurements are more manageable. Subject headings: cosmological parameters - cosmology: theory - galaxies: clusters: general - X-rays: galaxies: clusters

Molnar, Sandor M.↗

The X-ray spectra of clusters of galaxies

Spectral observations of clusters of galaxies are presented. Pre-HEAO results are reviewed, noting that (1) the relationship between velocity dispersion and X-ray temperature suggests that clusters truly possess their virial mass; (2) high-temperature clusters are generally more centrally condensed or contain proportionately more intergalactic gas; (3) there is an inverse correlation between percentage of spirals and the ram pressure experienced by an average galaxy in the cluster; and (4) the most central condensed clusters have higher X-ray temperatures, emission integrals and X-ray luminosities. Consideration is also given to HEAO-1 and HEAO-2 results. It is concluded that the X-ray emission from clusters of galaxies is due to a hot evolved intracluster gas with about 10% of the virial mass of the cluster. The X-ray gas is direct evidence of a virial mass in the cluster. The gas interacts with the galaxies and may change their morphology.

Mushotzky, R.↗

An ISOCAM based search for brown dwarfs in the Hyades

Brwon dwarfs in open cluster in general and in Hyades in particular are valuable as the age, distance and chemical composition of these dwarfs are well-constrained. The cooled environment of ISO allowed us to survey the low-mass component of the Hyades cluster with flux sensitivity unavailable from ground-based telescopes.

ISO brown dwarfs↗

First-principles and cluster expansion study of the effect of magnetism on short-range order in Fe–Ni–Cr austenitic stainless steels

Short-range order (SRO), the regular and predictable arrangement of atoms over short distances, alters the mechanical properties of technologically relevant structural materials such as medium/high entropy alloys and austenitic stainless steels. In this study, we present a generalized spin cluster expansion (CE) model and show that magnetism is a primary factor influencing the level of SRO present in austenitic Fe-Ni-Cr alloys. The spin CE consists of a chemical cluster expansion combined with an Ising model for Fe-Ni-Cr austenitic alloys. It explicitly accounts for local magnetic exchange interactions, thereby capturing the effects of finite temperature magnetism on SRO. Model parameters are obtained by fitting to a first-principles data set comprising both chemically and magnetically diverse FCC configurations. The magnitude of the magnetic exchange interactions are found to be comparable to the chemical interactions. Compared to a conventional implicit magnetism CE built from only magnetic ground state configurations, the spin CE shows improved performance on several experimental benchmarks over a broad spectrum of compositions, particularly at higher temperatures due to the explicit treatment of magnetic disorder. We find that SRO is strongly influenced by alloy Cr content, since Cr atoms prefer to align antiferromagnetically with nearest neighbors but become magnetically frustrated with increasing Cr concentration. Using the spin CE, we predict that increasing the Cr concentration in typical austenitic stainless steels promotes the formation of SRO and increases order-disorder transition temperatures. Furthermore, this study underscores the significance of considering magnetic interactions explicitly when exploring the thermodynamic properties of complex transition metal alloys. It also highlights guidelines for customizing SRO through adjustments of alloy composition.

36 MATERIALS SCIENCE↗

Computational models of direct and indirect X‐ray breast imaging detectors for in silico trials

Abstract Background To facilitate in silico studies that investigate digital mammography (DM) and breast tomosynthesis (DBT), models replicating the variety in imaging performance of the DM and DBT systems, observed across manufacturers are needed. Purpose The main purpose of this work is to develop generic physics models for direct and indirect detector technology used in commercially available systems, with the goal of making them available open source to manufacturers to further tweak and develop the exact in silico replicas of their systems. Methods We recently reported on an in silico version of the SIEMENS Mammomat Inspiration DM/DBT system using an open‐source GPU‐accelerated Monte Carlo x‐ray imaging simulation code (MC‐GPU). We build on the previous version of the MC‐GPU codes to mimic the imaging performances of two other Food and Drug Administration (FDA)‐approved DM/DBT systems, such as Hologic Selenia Dimensions (HSD) and the General Electric Senographe Pristina (GSP) systems. In this work, we developed a hybrid technique to model the optical spread and signal crosstalk observed in the GSP and HSD systems. MC simulations are used to track each x‐ray photon till its first interaction within the x‐ray detector. On the other hand, the signal spread in the x‐ray detectors is modeled using previously developed analytical equations. This approach allows us to preserve the modeling accuracy offered by MC methods in the patient body, while speeding up secondary carrier transport (either electron–hole pairs or optical photons) using analytical equations in the detector. The analytical optical spread model for the indirect detector includes the depth‐dependent spread and collection of optical photons and relies on a pre‐computed set of point response functions that describe the optical spread as a function of depth. To understand the capabilities of the computational x‐ray detector models, we compared image quality metrics like modulation transfer function (MTF), normalized noise power spectrum (NNPS), and detective quantum efficiency (DQE), simulated with our models against measured data. Please note that the purpose of these comparisons with measured data would be to gauge if the model developed as part of this work could replicate commercially used direct and indirect technology in general and not to achieve perfect fits with measured data. Results We found that the simulated image quality metrics such as MTF, NNPS, and DQE were in reasonable agreement with experimental data. To demonstrate the imaging performance of the three DM/DBT systems, we integrated the detector models with the VICTRE pipeline and simulated DM images of a fatty breast model containing a spiculated mass and a calcium oxalate cluster. In general, we found that the images generated using the indirect model appeared more blurred with a different noise texture and contrast as compared to the systems with direct detectors. Conclusions We have presented computational models of three commercially available FDA‐approved DM/DBT systems, which implement both direct and indirect detector technology. The updated versions of the MC‐GPU codes that can be used to replicate three systems are available in open source format through GitHub.

Sengupta, Aunnasha↗

Bottom-up design of actinide materials from molecular clusters: Demonstration of a general-purpose simulation capability leveraging machine-learned atomic potentials

Actinide thin-film coatings such as uranium dioxide (UO 2 ) play an important role in nuclear reactors and other mission-relevant applications, but realization of their potential requires a deep fundamental understanding of the chemical vapor deposition (CVD) processes used for their growth. The slow experimental progress can be attributed, in part, to the standard safety guidelines associated with handling uranium byproducts, which are often corrosive, toxic, and radioactive. Accurate simulation techniques, when used in concert with experiment, can improve laboratory safety, material durability, and deliverable timeframes. However, state-of-the-art computational methods are either insufficiently accurate or intractably expensive. To remedy this situation, in this project we suggested a machine-learning (ML) accelerated workflow for simulating molecular clustering toward deposition. As a benchmark test case, we considered molecular clustering in steam and assessed independent components of our workflow by comparing with measured thermodynamic properties of water. After analyzing each component individually and finding no fundamental barrier to realization of the workflow, we attempted to integrate the ML component, a Sandia-developed tool called FitSNAP. As this was the first application of FitSNAP to atoms and molecules in the gas phase at Sandia, the method required more fitting data than was originally anticipated. Systematic improvements were made by including in the fit data diatomic potentials, molecular single-bond-breaking curves, and symmetry-constrained intermolecular potentials. We concluded that our strategy provides a feasible pathway toward modeling CVD and related processes, but that extensive training data must be generated before it can be of practical use.

36 MATERIALS SCIENCE↗

Small Volcanic Vents of the Tharsis Volcanic Province, Mars

Distributed-style volcanism is an end member of terrestrial volcanism that produces clusters of small volcanoes when isolated magma bodies ascend from broad magma source regions. Volcano clusters can develop over millions of years, one volcano at a time, and can be used to infer unobserved geologic phenomena, including subsurface stresses and cracks during eruption periods. The Tharsis Volcanic Province covers approximately one quarter of the Martian surface and hosts a large concentration of small volcanoes that formed from distributed volcanism. We present a catalog of 1106 small volcanic vents identified within Tharsis Volcanic Province. This catalog includes morphologic measurements for each cataloged vent. Vent lengths range from 71 m to 51 km, widths range from 40 m to 3.1 km, and 90% of vents have lengths at least 1.5 times their widths. Additionally, 90% of edifices associated with vents have topographic prominences <100 m. Vents are found throughout Tharsis, though they generally form clusters near large volcanoes or among large graben sets. Older regions with volcanic eruption ages of >1 Ga are found at the Tharsis periphery in the Tempe-Mareotis region and Syria Planum. Vents in the Tharsis interior have reported ages <500 Ma. Regional trends in vent orientation and intervent alignment are dependent on nearby central volcanoes and fossae. We use these findings to hypothesize that within the most recent 500 Ma, magma was present under and to the east of the Tharsis Montes and that some of this magma erupted and built hundreds of small volcanoes in this region.

Distributed volcanism↗

The impact of environmental effects on active galactic nuclei: A decline in the incidence of ionized outflows

Active galactic nuclei (AGNs) have generally been considered to be less frequent in denser environments due to a lower number of galaxy-galaxy interactions and/or the removal of their gas-rich reservoirs by the dense intergalactic medium. However, recent observational and theoretical works suggest that the effect of ram-pressure stripping acting on galaxies in dense environments might reduce the angular momentum of their gas, causing it to infall towards the super massive black hole at their centre, activating the AGN phase. In this work we explore the connection between environment and nuclear activity by evaluating the variation in the incidence of ionized outflows, a common phenomenon associated with nuclear activity, in AGNs across different environments. We select a sample of approximately 3300 optical AGNs from the Sloan Digital Sky Survey Data Release 13, which we match with a group catalogue to identify galaxies in isolation or residing in groups. We further probe their environments through the projected distance to the central galaxy of the group or cluster and the projected surface density to the fifth neighbour (δ 5 ). The presence of ionized outflows is determined through the modelling of the [O III] λ5007 emission line. We find that at lower masses (< 10 10.3 M ⊙ ), the fraction of ionized outflows is significantly lower in satellite AGNs (~7%) than in isolated (~22%) AGNs, probably due to their different AGN luminosity, L [O III] , in this stellar mass range. The fraction of outflows decreases at distances closer to the central galaxy of the group or cluster for all satellite AGNs; however, only the lower-mass ones (10 9 - 10 10.3 M ⊙ ) display a significant decline with δ 5 . Although this study does not include AGNs in the densest regions of galaxy clusters, our findings suggest that AGNs in dense environments accrete less gas than those in the field, potentially due to the removal of the gas reservoirs via stripping or starvation, leading to a negative connection between environment and AGN activity. Based on our results, we propose that the observed change in the incidence of outflows when moving towards denser regions of groups and clusters could contribute to the higher gas metallicities of cluster galaxies compared to field galaxies, especially at lower masses.

79 ASTRONOMY AND ASTROPHYSICS↗

Lifetime of actin-dependent protein nanoclusters

Protein nanoclusters (PNCs) are dynamic collections of a few proteins that spatially organize in nanometer-length clusters. PNCs are one of the principal forms of spatial organization of membrane proteins, and they have been shown or hypothesized to be important in various cellular processes, including cell signaling. PNCs show remarkable diversity in size, shape, and lifetime. In particular, the lifetime of PNCs can vary over a wide range of timescales. The diversity in size and shape can be explained by the interaction of the clustering proteins with the actin cytoskeleton or the lipid membrane, but very little is known about the processes that determine the lifetime of the nanoclusters. In this paper, using mathematical modeling of the cluster dynamics, we model the biophysical processes that determine the lifetime of actin-dependent PNCs. In particular, we investigated the role of actin aster fragmentation, which had been suggested to be a key determinant of the PNC lifetime, and we found that it is important only for a small class of PNCs. A simple extension of our model allowed us to investigate the kinetics of protein-ligand interaction near PNCs. We found an anomalous increase in the lifetime of ligands near PNCs, which agrees remarkably well with experimental data on RAS-RAF kinetics. In particular, analysis of the RAS-RAF data through our model provides falsifiable predictions and novel hypotheses that will not only shed light on the role of RAS-RAF kinetics in various cancers, but also will be useful in studying membrane protein clustering in general.

59 BASIC BIOLOGICAL SCIENCES↗

Engineering modular enzyme assembly: synthetic interface strategies for natural products biosynthesis applications

Covering: 2020 to 2025Natural products remain indispensable sources of therapeutic and bioactive compounds, yet traditional discovery strategies are constrained by compound rediscovery. Modular biosynthetic enzymes, such as type I polyketide synthases (PKSs) and type A non-ribosomal peptide synthetases (NRPSs), offer promising platforms for combinatorial biosynthesis owing to their programmable architectures. However, practical implementation is frequently limited by inter-modular incompatibility and domain-specific interactions. This review highlights recent advances in modular enzyme assembly enabled by synthetic interfaces-including cognate docking domains, synthetic coiled-coils, SpyTag/SpyCatcher, and split inteins-which function as orthogonal, standardized connectors to facilitate post-translational complex formation. These interfaces support rational investigations into substrate specificity, module compatibility, and pathway derivatization as well as general enzyme clustering applications beyond PKS and NRPS systems. Synthetic interfaces can be integrated with computational tools to support a more systematic and scalable framework for modular enzyme engineering by providing predictive insights into domain compatibility and interface design. These approaches within iterative design-build-test-learn workflows can accelerate the programmable assembly of biosynthetic systems and expand the accessible chemical space for natural products.

Kim, Gahyeon↗