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At least 55 records · Page 3

A Causal Inference Model Based on Random Forests to Identify the Effect of Soil Moisture on Precipitation

Soil moisture influences precipitation mainly through its impact on land–atmosphere interactions. Understanding and correctly modeling soil moisture–precipitation (SM–P) coupling is crucial for improving weather forecasting and subseasonal to seasonal climate predictions, especially when predicting the persistence and magnitude of drought. However, the sign and spatial structure of SM–P feedback are still being debated in the climate research community, mainly due to the difficulty in establishing causal relationships and the high degree of nonlinearity in land–atmosphere processes. To this end, we developed a causal inference model based on the Granger causality analysis and a nonlinear machine learning model. This model includes three steps: nonlinear anomaly decomposition, nonlinear Granger causality analysis, and evaluation of the quality of SM–P feedback, which eliminates the nonlinear response of interannual and seasonal variability and the memory effects of climatic factors and isolates the causal relationship of local SM–P feedback. We applied this model by using National Climate Assessment–Land Data Assimilation System (NCA-LDAS) datasets over the United States. Here, the results highlight the importance of nonlinear atmosphere responses in land–atmosphere interactions. In addition, the strong feedback over the southwestern United States and the Great Plains both highlight the impacts of topographic factors rather than only the sensitivity of evapotranspiration to soil moisture. Furthermore, the SM–P index defined by our framework is used to benchmark Earth system models (ESMs), which provides a new metric for efficiently identifying potential model biases in modeling local land–atmosphere interactions and may help the development of ESMs in improving simulations of water cycle variability and extremes.

54 ENVIRONMENTAL SCIENCES↗

Causal relationship between mitochondrial-associated proteins and cerebral aneurysms: a Mendelian randomization study

Background Cerebral aneurysm is a high-risk cerebrovascular disease with a poor prognosis, potentially linked to multiple factors. This study aims to explore the association between mitochondrial-associated proteins and the risk of cerebral aneurysms using Mendelian randomization (MR) methods. Methods We used GWAS summary statistics from the IEU Open GWAS project for mitochondrial-associated proteins and from the Finnish database for cerebral aneurysms (uIA, aSAH). The association between mitochondrial-associated exposures and cerebral aneurysms was evaluated using MR-Egger, weighted mode, IVW, simple mode and weighted median methods. Reverse MR assessed reverse causal relationship, while sensitivity analyses examined heterogeneity and pleiotropy in the instrumental variables. Significant causal relationship with cerebral aneurysms were confirmed using FDR correction. Results Through MR analysis, we identified six mitochondrial proteins associated with an increased risk of aSAH: AIF1 (OR: 1.394, 95% CI: 1.109–1.752, p = 0.0044), CCDC90B (OR: 1.318, 95% CI: 1.132–1.535, p = 0.0004), TIM14 (OR: 1.272, 95% CI: 1.041–1.553, p = 0.0186), NAGS (OR: 1.219, 95% CI: 1.008–1.475, p = 0.041), tRNA PusA (OR: 1.311, 95% CI: 1.096–1.569, p = 0.003), and MRM3 (OR: 1.097, 95% CI: 1.016–1.185, p = 0.0175). Among these, CCDC90B, tRNA PusA, and AIF1 demonstrated a significant causal relationship with an increased risk of aSAH (FDR q < 0.1). Three mitochondrial proteins were associated with an increased risk of uIA: CCDC90B (OR: 1.309, 95% CI: 1.05–1.632, p = 0.0165), tRNA PusA (OR: 1.306, 95% CI: 1.007–1.694, p = 0.0438), and MRM3 (OR: 1.13, 95% CI: 1.012–1.263, p = 0.0303). In the reverse MR study, only one mitochondrial protein, TIM14 (OR: 1.087, 95% CI: 1.004–1.177, p = 0.04), showed a causal relationship with aSAH. Sensitivity analysis did not reveal heterogeneity or pleiotropy. The results suggest that CCDC90B, tRNA PusA, and MRM3 may be common risk factors for cerebral aneurysms (ruptured and unruptured), while AIF1 and NAGS are specifically associated with an increased risk of aSAH, unrelated to uIA. TIM14 may interact with aSAH. Conclusion Our findings confirm a causal relationship between mitochondrial-associated proteins and cerebral aneurysms, offering new insights for future research into the pathogenesis and treatment of this condition.

Wang, Shuai↗

Attention for Causal Relationship Discovery from Biological Neural Dynamics

This paper explores the potential of the transformer models for learning Granger causality in networks with complex nonlinear dynamics at every node, as in neurobiological and biophysical networks. Our study primarily focuses on a proof-of-concept investigation based on simulated neural dynamics, for which the ground-truth causality is known through the underlying connectivity matrix. For transformer models trained to forecast neuronal population dynamics, we show that the cross-attention module effectively captures the causal relationship among neurons, with an accuracy equal to or superior to that of the most popular Granger causality discovery method. While we acknowledge that real-world neurobiology data will bring further challenges, including dynamic connectivity and unobserved variability, this research offers an encouraging preliminary glimpse into the utility of the transformer model for causal representation learning in neuroscience.

Lu, Ziyu↗

A Generation-Storage Coordination Dispatch Strategy for Power System Based on Causal Reinforcement Learning

In the backdrop of global energy transformation, power systems integrating high proportions of renewable energy sources are facing unprecedented challenges in operational stability and dispatch efficiency. To address these challenges, this study introduces a generation-storage coordination real-time dispatch strategy based on Causal Power System Dynamic Reinforcement Learning (CPSDRL). Diverging from traditional reinforcement learning approaches, CPSDRL innovatively incorporates causal inference within the state prediction model - the crux of model-based reinforcement learning - thereby establishing the Power Causal Dynamic Model (PCDM). Assisted by the prior knowledge of power systems, the model significantly enhances prediction accuracy and reliability through a two-stage training process. Utilizing PCDM, this study further applies a direct policy search algorithm to optimize the real-time dispatch strategy. Experimental results indicate that the proposed method improves the stability of generation-storage coordination real-time dispatch and exhibits competitive advantages in sample efficiency and computational speed, compared to traditional model-based and model-free reinforcement learning algorithms. This method is expected to enhance the practicality and adaptability of causal reinforcement learning techniques in power system scheduling and control.

causal reinforcement learning↗

Mapping causal patterns in crystalline solids

The evolution of the atomic structures of the combinatorial library of Sm-substituted thin film BiFeO 3 along the phase transition boundary from the ferroelectric rhombohedral phase to the non-ferroelectric orthorhombic phase is explored using scanning transmission electron microscopy. Localized properties, including polarization, lattice parameter, and chemical composition, are parameterized from atomic-scale imaging, and their causal relationships are reconstructed using a linear non-Gaussian acyclic model. This approach is further extended to explore the spatial variability of the causal coupling using the sliding window transform method, which revealed that new causal relationships emerged at both the expected locations, such as domain walls and interfaces, and at additional regions forming clusters in the vicinity of the walls or spatially distributed features. While the exact physical origins of these relationships are unclear, they likely represent nanophase-separated regions in the morphotropic phase boundaries. Overall, we posit that an in-depth understanding of complex disordered materials away from thermodynamic equilibrium necessitates understanding not only the generative processes that can lead to observed microscopic states but also the causal links between multiple interacting subsystems.

Causal inference↗

Structural Break and Causal Analyses of U.S. Corn Use for Ethanol and Other Corn Market Variables

The causal basis for many of the relationships in models used to estimate the indirect effects of U.S. biofuels on global agricultural markets has not been adequately established. This paper addresses this gap by examining causal interactions among corn market variables through which the indirect effects of U.S. corn use for ethanol would be transmitted. Specifically, structural break and causal analyses of U.S. corn supply, uses, trade, and price are performed using quarterly data for marketing years 1986 to 2017. The structural break analysis identifies three breaks in corn use for ethanol that reflect the policy-driven evolution of U.S. corn ethanol production and other market factors. The causality analysis finds that U.S. corn use for ethanol is not a driver of the corn price and net corn exports. Changes in corn supply and domestic corn use are found to be the key factors in accommodating the large increase in corn use for ethanol between 2003 and 2010. These results mean that common assumptions linking U.S. corn ethanol production to large reductions in corn availability and exports, and higher global corn prices merit reconsideration.

09 BIOMASS FUELS↗

A Comparative Study of Model Predictive Control and Optimal Causal Control for Heaving Point Absorbers

Efforts by various researchers in recent years to design simple causal control laws that can be applied to WEC devices suggest that these controllers can yield similar levels of energy output as those of more complex non-causal controllers. However, most studies were established without adequately considering device and power conversion system constraints which are relevant design drivers from a cost and economic point of view. It is therefore imperative to understand the benefits of MPC compared to causal control from a performance and constraint handling perspective. In this paper, we compare linear MPC to a casual controller that incorporates constraint handling to benchmark its performance on a one DoF heaving point absorber in a range of wave conditions. Our analysis demonstrates that MPC provides significant performance advantages compared to an optimized causal controller, particularly if significant constraints on device motion and/or forces are imposed. We further demonstrate that distinct control performance regions can be established that correlate well with classical point absorber and volumetric limits of the wave energy conversion device.

42 ENGINEERING↗

Evaluating causal‐based feature selection for fuel property prediction models

Abstract In‐silico screening of novel biofuel molecules based on chemical and fuel properties is a critical first step in the biofuel evaluation process due to the significant volumes of samples required for experimental testing, the destructive nature of engine tests, and the costs associated with bench‐scale synthesis of novel fuels. Predictive models are limited by training sets of few existing measurements, often containing similar classes of molecules that represent just a subset of the potential molecular fuel space. Software tools can be used to generate every possible molecular descriptor for use as input features, but most of these features are largely irrelevant and training models on datasets with higher dimensionality than size tends to yield poor predictive performance. Feature selection has been shown to improve machine learning models, but correlation‐based feature selection fails to provide scientific insight into the underlying mechanisms that determine structure–property relationships. The implementation of causal discovery in feature selection could potentially inform the biofuel design process while also improving model prediction accuracy and robustness to new data. In this study, we investigate the benefits causal‐based feature selection might have on both model performance and identification of key molecular substructures. We found that causal‐based feature selection performed on par with alternative filtration methods, and that a structural causal model provides valuable scientific insights into the relationships between molecular substructures and fuel properties.

Nguyen, Bernard↗

Gravitational causality and the self-stress of photons

We study causality in gravitational systems beyond the classical limit. Using on-shell methods, we consider the 1-loop corrections from charged particles to the photon energy-momentum tensor — the self-stress — that controls the quantum interaction between two on-shell photons and one off-shell graviton. The self-stress determines in turn the phase shift and time delay in the scattering of photons against a spectator particle of any spin in the eikonal regime. We show that the sign of the β-function associated to the running gauge coupling is related to the sign of time delay at small impact parameter. Our results show that, at first post-Minkowskian order, asymptotic causality, where the time delay experienced by any particle must be positive, is respected quantum mechanically. Contrasted with asymptotic causality, we explore a local notion of causality, where the time delay is longer than the one of gravitons, which is seemingly violated by quantum effects.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Causal sets and an emerging continuum

Abstract Causal set theory offers a simple and elegant picture of discrete physics. But the vast majority of causal sets look nothing at all like continuum spacetimes, and must be excluded in some way to obtain a realistic theory. I describe recent results showing that almost all non-manifoldlike causal sets are, in fact, very strongly suppressed in the gravitational path integral. This does not quite demonstrate the emergence of a continuum—we do not yet understand the remaining unsuppressed causal sets well enough—but it is a significant step in that direction.

Astronomy & Astrophysics↗

Angular correlations of causally-coherent primordial quantum perturbations

In this work, we consider the hypothesis that nonlocal, omnidirectional, causally-coherent quantum entanglement of inflationary horizons may account for some well-known measured anomalies of cosmic microwave background (CMB) anisotropy on large angular scales. It is shown that causal coherence can lead to less cosmic variance in the large-angle power spectrum C &ell; of primordial curvature perturbations on spherical horizons than predicted by the standard model of locality in effective field theory, and to new symmetries of the angular correlation function C (Θ). Causal considerations are used to construct an approximate analytic model for C (Θ) on angular scales larger than a few degrees. Allowing for uncertainties from the unmeasured intrinsic dipole and from Galactic foreground subtraction, causally-coherent constraints are shown to be consistent with measured CMB correlations on large angular scales. Reduced cosmic variance will enable powerful tests of the hypothesis with better foreground subtraction and higher fidelity measurements on large angular scales.

79 ASTRONOMY AND ASTROPHYSICS↗

The Einstein–Hilbert action for entropically dominant causal sets

Abstract In the path integral formulation of causal set quantum gravity, the quantum partition function is a phase-weighted sum over locally finite partially ordered sets, which are viewed as discrete quantum spacetimes. It is known, however, that the number of ‘layered’ sets—a class of causal sets that look nothing like spacetime manifolds—grows superexponentially with the cardinalityn, giving an entropic contribution that can potentially dominate that of the action. We show here that in any dimension, the discrete Einstein–Hilbert action for a typicalK-layered causal set reduces to the simple link action to leading order inn. Combined with earlier work, this completes the proof that the layered sets, although entropically dominant, are very strongly suppressed in the path sum of causal set quantum gravity whenever the discreteness scale is greater than or equal to a (mildly dimension-dependent) order one multiple of the Planck scale.

Astronomy & Astrophysics↗

Learning genetic perturbation effects with variational causal inference

Advances in sequencing technologies have enhanced the understanding of gene regulation in cells. In particular, Perturb-seq has enabled high-resolution profiling of the transcriptomic response to genetic perturbations at the single-cell level. This understanding has implications in functional genomics and potentially for identifying therapeutic targets. Various computational models have been developed to predict perturbational effects. While deep learning models excel at interpolating observed perturbational data, they tend to overfit in the lack of enough data and may not generalize well to unseen perturbations. In contrast, mechanistic models, such as linear causal models based on gene regulatory networks, hold greater potential for extrapolation, as they encapsulate regulatory information that can predict responses to unseen perturbations. However, their application has been limited to small studies due to overly simplistic assumptions, making them less effective in handling noisy, large-scale single-cell data. We propose a hybrid approach that combines a mechanistic causal model with variational deep learning, termed Single Cell Causal Variational Autoencoder (SCCVAE). The mechanistic model employs a learned regulatory network to represent perturbational changes as shift interventions that propagate through the learned network. SCCVAE integrates this mechanistic causal model into a variational autoencoder, generating rich, comprehensive transcriptomic responses. Our results indicate that SCCVAE exhibits superior performance over current state-of-the-art baselines for extrapolating to predict unseen perturbational responses. Additionally, for the observed perturbations, the latent space learned by SCCVAE allows for the identification of functional perturbation modules and simulation of single-gene knockdown experiments of varying penetrance, presenting a robust tool for interpreting and interpolating perturbational responses at the single-cell level.

59 BASIC BIOLOGICAL SCIENCES↗

Causal Evaluations for Identifying Differences between Observations and Earth System Models

We use a nascent data-driven causal discovery method to find and compare causal relationships in observed data and climate model output. We consider ten different features in the Arctic climate collected from public databases on observational and Energy Exascale Earth System Model (E3SM) data. In identifying and analyzing the resulting causal networks, we make meaningful comparisons between observed and climate model interdependencies. This work demonstrates our ability to apply the PCMCI causal discovery algorithm to Arctic climate data, that there are noticeable similarities between observed and simulated Arctic climate dynamics, and that further work is needed to identify specific areas for improvement to better align models with natural observations.

54 ENVIRONMENTAL SCIENCES↗

Graph-Based Similarity Metrics for Comparing Simulation Model Causal Structures

The causal structure of a simulation is a major determinant of both its character and behavior, yet most methods we use to compare simulations focus only on simulation outputs. We introduce a method that combines graphical representation with information theoretic metrics to quantitatively compare the causal structures of models. The method applies to agent-based simulations as well as system dynamics models and facilitates comparison within and between types. Comparing models based on their causal structures can illuminate differences in assumptions made by the models, allowing modelers to (1) better situate their models in the context of existing work, including highlighting novelty, (2) explicitly compare conceptual theory and assumptions to simulated theory and assumptions, and (3) investigate potential causal drivers of divergent behavior between models. We demonstrate the method by comparing two epidemiology models at different levels of aggregation.

97 MATHEMATICS AND COMPUTING↗

Causal machine learning uncovers conditions for convective intensification driven by organic and sulfate aerosols

Aerosols are often hypothesized to invigorate deep convective clouds (DCCs), but observational evidence remains limited and inconclusive. Clarifying this hypothesis is critical for regions vulnerable to thunderstorms and flooding, particularly highly polluted coastal cities. Leveraging a novel causal discovery–inference pipeline and high-resolution observations near Houston, TX, we identify multiple causal pathways among aerosols (mostly organic and sulfate), DCCs, and meteorological factors. However, a direct causal link from aerosols to DCCs is found to be uncommon, occurring in less than 35% of analyzed scenarios, and is characterized by strong conditionality and nonlinearity. When aerosol impacts on DCCs do occur, they can be substantial, enhancing DCC core heights by approximately 1.7 km, with 92% of this effect concentrated in warmer-phase cloud regions. Notably, the presence of sea breezes and the inclusion of all measured aerosol particles each enhance DCCs in over 95% of aerosol-sensitive cases.

54 ENVIRONMENTAL SCIENCES↗

Exploring Causal Physical Mechanisms via Non-Gaussian Linear Models and Deep Kernel Learning: Applications for Ferroelectric Domain Structures

Rapid emergence of multimodal imaging in scanning probe, electron, and optical microscopies has brought forth the challenge of understanding the information contained in these complex data sets, targeting the intrinsic correlations between different channels, and further exploring the underpinning causal physical mechanisms. Here, we develop such an analysis framework for Piezoresponse Force Microscopy. We argue that under certain conditions, we can bootstrap experimental observations with the prior knowledge of materials structure to get information on certain nonobserved properties, and demonstrate linear causal analysis for PFM observables. We further demonstrate that the strength of individual causal links between complex descriptors can be ascertained using the deep kernel learning (DKL) model. In this DKL analysis, we use the prior information on domain structure within the image to predict the physical properties. This analysis demonstrates the correlative relationships between morphology, piezoresponse, elastic property, etc., at nanoscale. The prediction of morphology and other physical parameters illustrates a mutual interaction between surface condition and physical properties in ferroelectric materials. Overall, this analysis is universal and can be extended to explore the correlative relationships of other multichannel data sets, and allow for high-fidelity reconstruction of underpinning functionalities and physical mechanisms.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Quantum Mechanics of a Spherically Symmetric Causal Diamond in Minkowski Spacetime

We construct the phase space of a spherically symmetric causal diamond in ( d + 2 )-dimensional Minkowski spacetime. Utilizing the covariant phase space formalism, we identify the relevant degrees of freedom that localize to the d -dimensional bifurcate horizon and, upon canonical quantization, determine their commutators. On this phase space, we find two Iyer-Wald charges. The first of these charges, proportional to the area of the causal diamond, is responsible for shifting the null time along the horizon and has been well documented in the literature. The second charge is much less understood, being integrable for d ≥ 2 only if we allow for field-dependent diffeomorphisms and is responsible for changing the size of the causal diamond. Published by the American Physical Society 2025

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗