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PROTEUS-SN User Manual

PROTEUS-SN is a three-dimensional, highly scalable, high-fidelity neutron transport code developed at Argonne National Laboratory. The code is applicable to all spectrum reactor transport calculations, particularly those in which a high degree of fidelity is needed either to represent spatial detail or to resolve solution gradients. PROTEUS-SN solves the second order formulation of the transport equation using the continuous Galerkin finite element method in space, the discrete ordinates approximation in angle, and the multigroup approximation in energy. PROTEUS-SN’s parallel methodology permits the efficient decomposition of the problem by both space and angle, permitting large problems to run efficiently on hundreds of thousands of cores. PROTEUS-SN can also be used in serial or on smaller compute clusters (10’s to 100’s of cores) for smaller homogenized problems, although it is generally more computationally expensive than traditional homogenized methodology codes. PROTEUS-SN has been used to model partially homogenized systems, where regions of interest are represented explicitly and other regions are homogenized to reduce the problem size and required computational resources. PROTEUS-SN solves forward and adjoint eigenvalue problems and permits both neutron upscattering and downscattering. An adiabatic kinetics option has recently been included for performing simple time-dependent calculations in addition to standard steady state calculations. PROTEUS-SN handles void and reflective boundary conditions. Multigroup cross sections can be generated externally using the MC2-3 fast reactor multigroup cross section generation code or internally using the cross section application programming interface (API) which can treat the subgroup or resonance table libraries. PROTEUS-SN is written in Fortran 90 and also includes C preprocessor definitions. The code links against the PETSc, METIS, HDF5, and MPICH libraries. It optionally links against the MOAB library and is a part of the SHARP multi-physics suite for coupled multi-physics analysis of nuclear reactors. This user manual describes how to set up a neutron transport simulation with the PROTEUS-SN code. A companion methodology manual describes the theory and algorithms within PROTEUS-SN.

97 MATHEMATICS AND COMPUTING↗

A New Recycling Method to Generate Turbulent Inflow Profiles

The accuracy of the scale-resolving simulations for practical geometries strongly depends on the inflow boundary conditions. Imposing experimentally observed turbulent inflow profiles for the numerical simulations is a major challenge. Existing methods available in the literature assume self-similar behavior, which is not true for most of the experiments. In the present work, we formulate the turbulent inflow profile generation technique as an optimization problem. An adjoint technique is exploited to evaluate the sensitivities of multiple input parameters for the present problem. The present formulation is then tested to generate a laminar boundary layer profile, turbulent boundary layer profile, and turbulent jet profile.

Garai, Anirban↗

An inverse problem strategy based on forward model evaluations: Gradient-based optimization without adjoint solves

This study presents a new nonlinear programming formulation for the solution of inverse problems. First, a general inverse problem formulation based on the compliance error functional is presented. The proposed error functional enables the computation of the Lagrange multipliers, and thus the first order derivative information, at the expense of just one model evaluation. Therefore, the calculation of the Lagrange multipliers does not require the solution of the computationally intensive adjoint problem. This leads to significant speedups for large-scale, gradient-based inverse problems.

42 ENGINEERING↗

Adjoint-Based Diagnostics in Atmospheric Data Assimilation

With the adjoint of a data assimilation system, the impact of any or all assimilated observations on measures of forecast or analysis skill can be estimated accurately and efficiently. The approach is especially well-suited for assessing the impact of hyper-spectral satellite instruments on numerical weather forecasts because it easily allows aggregation of results in terms of individual data types, channels or locations, all computed simultaneously based on a single pass of the Adjoint- system. This talk 'provides a general overview of the use of Adjoint-based diagnostic tools in data assimilation. We will focus on the theoretical basis and practical implementation of these tools, as well as their application to specific problems. Adjoint-based Impact calculations will be compared with results from standard observing system experiments (OSEs) and their application to related problems, such as the calibration of Observing System Simulation Experiments (OSSEs) will be discussed.

Gelaro, Ronald↗

Adjoint Algorithm for CAD-Based Shape Optimization Using a Cartesian Method

Adjoint solutions of the governing flow equations are becoming increasingly important for the development of efficient analysis and optimization algorithms. A well-known use of the adjoint method is gradient-based shape optimization. Given an objective function that defines some measure of performance, such as the lift and drag functionals, its gradient is computed at a cost that is essentially independent of the number of design variables (geometric parameters that control the shape). More recently, emerging adjoint applications focus on the analysis problem, where the adjoint solution is used to drive mesh adaptation, as well as to provide estimates of functional error bounds and corrections. The attractive feature of this approach is that the mesh-adaptation procedure targets a specific functional, thereby localizing the mesh refinement and reducing computational cost. Our focus is on the development of adjoint-based optimization techniques for a Cartesian method with embedded boundaries.12 In contrast t o implementations on structured and unstructured grids, Cartesian methods decouple the surface discretization from the volume mesh. This feature makes Cartesian methods well suited for the automated analysis of complex geometry problems, and consequently a promising approach to aerodynamic optimization. Melvin et developed an adjoint formulation for the TRANAIR code, which is based on the full-potential equation with viscous corrections. More recently, Dadone and Grossman presented an adjoint formulation for the Euler equations. In both approaches, a boundary condition is introduced to approximate the effects of the evolving surface shape that results in accurate gradient computation. Central to automated shape optimization algorithms is the issue of geometry modeling and control. The need to optimize complex, "real-life" geometry provides a strong incentive for the use of parametric-CAD systems within the optimization procedure. In previous work, we presented an effective optimization framework that incorporates a direct-CAD interface. In this work, we enhance the capabilities of this framework with efficient gradient computations using the discrete adjoint method. We present details of the adjoint numerical implementation, which reuses the domain decomposition, multigrid, and time-marching schemes of the flow solver. Furthermore, we explain and demonstrate the use of CAD in conjunction with the Cartesian adjoint approach. The final paper will contain a number of complex geometry, industrially relevant examples with many design variables to demonstrate the effectiveness of the adjoint method on Cartesian meshes.

Nemec, Marian↗

A note on the reliability of goal-oriented error estimates for Galerkin finite element methods with nonlinear functionals

Here, we consider estimating the discretization error in a nonlinear functional J (u) in the setting of an abstract variational problem: find u ϵ $\mathscr{V}$ such that B (u, φ) = L (φ) ∀φ ϵ $\mathscr{V}$, as approximated by a Galerkin finite element method. Here, $\mathscr{V}$ is a Hilbert space, B (. , .) is a bilinear form, and L (∙) is a linear functional. We consider well-known error estimates η of the form J (u) - J (u h ) ≈ η = L (z) - B (u h , z), where u h denotes a finite element approximation to u, and z denotes the solution to an auxiliary adjoint variational problem. We show that there exist nonlinear functionals for which error estimates of this form are not reliable, even in the presence of an exact adjoint solution z. An estimate η is said to be reliable if there exists a constant C ϵ $\mathbb{R}$ >0 independent of u h such that |J (u) - J (u h )| ≤ C|η|. We present several example pairs of bilinear forms and nonlinear functionals where reliability of η is not achieved.

A posteriori↗

SU-D-210-03: Limited-View Multi-Source Quantitative Photoacoustic Tomography

Purpose: This work is to investigate a novel limited-view multi-source acquisition scheme for the direct and simultaneous reconstruction of optical coefficients in quantitative photoacoustic tomography (QPAT), which has potentially improved signal-to-noise ratio and reduced data acquisition time. Methods: Conventional QPAT is often considered in two steps: first to reconstruct the initial acoustic pressure from the full-view ultrasonic data after each optical illumination, and then to quantitatively reconstruct optical coefficients (e.g., absorption and scattering coefficients) from the initial acoustic pressure, using multi-source or multi-wavelength scheme.Based on a novel limited-view multi-source scheme here, We have to consider the direct reconstruction of optical coefficients from the ultrasonic data, since the initial acoustic pressure can no longer be reconstructed as an intermediate variable due to the incomplete acoustic data in the proposed limited-view scheme. In this work, based on a coupled photo-acoustic forward model combining diffusion approximation and wave equation, we develop a limited-memory Quasi-Newton method (LBFGS) for image reconstruction that utilizes the adjoint forward problem for fast computation of gradients. Furthermore, the tensor framelet sparsity is utilized to improve the image reconstruction which is solved by Alternative Direction Method of Multipliers (ADMM). Results: The simulation was performed on a modified Shepp-Logan phantom to validate the feasibility of the proposed limited-view scheme and its corresponding image reconstruction algorithms. Conclusion: A limited-view multi-source QPAT scheme is proposed, i.e., the partial-view acoustic data acquisition accompanying each optical illumination, and then the simultaneous rotations of both optical sources and ultrasonic detectors for next optical illumination. Moreover, LBFGS and ADMM algorithms are developed for the direct reconstruction of optical coefficients from the acoustic data. Jing Feng and Hao Gao were partially supported by the NSFC (#11405105), the 973 Program (#2015CB856000) and the Shanghai Pujiang Talent Program (#14PJ1404500)

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Utilizing Adjoint-Based Error Estimates for Surrogate Models to Accurately Predict Probabilities of Events

In thist study, we develop a procedure to utilize error estimates for samples of a surrogate model to compute robust upper and lower bounds on estimates of probabilities of events. We show that these error estimates can also be used in an adaptive algorithm to simultaneously reduce the computational cost and increase the accuracy in estimating probabilities of events using computationally expensive high-fidelity models. Specifically, we introduce the notion of reliability of a sample of a surrogate model, and we prove that utilizing the surrogate model for the reliable samples and the high-fidelity model for the unreliable samples gives precisely the same estimate of the probability of the output event as would be obtained by evaluation of the original model for each sample. The adaptive algorithm uses the additional evaluations of the high-fidelity model for the unreliable samples to locally improve the surrogate model near the limit state, which significantly reduces the number of high-fidelity model evaluations as the limit state is resolved. Numerical results based on a recently developed adjoint-based approach for estimating the error in samples of a surrogate are provided to demonstrate (1) the robustness of the bounds on the probability of an event, and (2) that the adaptive enhancement algorithm provides a more accurate estimate of the probability of the QoI event than standard response surface approximation methods at a lower computational cost.

97 MATHEMATICS AND COMPUTING↗

Data-Driven Wind Farm Optimization Incorporating Effects of Turbulence Intensity

We demonstrate assimilation of field data from a nacelle-mounted lidar and meteorological tower into a medium-fidelity Reynolds-Averaged Navier Stokes wind farm flow model to better predict the effects of atmospheric stability. Increased predictability under a variety of atmospheric conditions can lead to more effective control design and optimization of a wind farm. In particular, atmospheric stability affects wind turbine wake propagation and, therefore, aspects of wind farm control and performance, such as active wind farm control, layout optimization, and power output. Accurately modeling wakes in different stability conditions remains a persistent challenge. This paper presents an optimization framework that leverages high-fidelity field or simulation data to correct a lower-fidelity flow model. Optimal model corrections are found by solving a regularized, high-dimensional, gradient-based optimization problem using adjoint flowfield information. We validate the trained model against large eddy simulation results, and perform separate gradient-based layout optimizations of a simulated utility-scale wind farm to maximize power. Using the data-driven model corrections, we find that atmospheric stability significantly impacts layout optimization and power production: the optimal layout for stable conditions produced 9.1% more power than the optimal layout for unstable conditions, and the optimal layout for neutral conditions underperformed by 8.5% in unstable conditions.

17 WIND ENERGY↗

Numerical algorithms for finite element computations on arrays of microprocessors

The development of a multicolored successive over relaxation (SOR) program for the finite element machine is discussed. The multicolored SOR method uses a generalization of the classical Red/Black grid point ordering for the SOR method. These multicolored orderings have the advantage of allowing the SOR method to be implemented as a Jacobi method, which is ideal for arrays of processors, but still enjoy the greater rate of convergence of the SOR method. The program solves a general second order self adjoint elliptic problem on a square region with Dirichlet boundary conditions, discretized by quadratic elements on triangular regions. For this general problem and discretization, six colors are necessary for the multicolored method to operate efficiently. The specific problem that was solved using the six color program was Poisson's equation; for Poisson's equation, three colors are necessary but six may be used. In general, the number of colors needed is a function of the differential equation, the region and boundary conditions, and the particular finite element used for the discretization.

Ortega, J. M.↗

Iterative spectral methods and spectral solutions to compressible flows

A spectral multigrid scheme is described which can solve pseudospectral discretizations of self-adjoint elliptic problems in O(N log N) operations. An iterative technique for efficiently implementing semi-implicit time-stepping for pseudospectral discretizations of Navier-Stokes equations is discussed. This approach can handle variable coefficient terms in an effective manner. Pseudospectral solutions of compressible flow problems are presented. These include one dimensional problems and two dimensional Euler solutions. Results are given both for shock-capturing approaches and for shock-fitting ones.

Hussaini, M. Y.↗

Eigenvector derivatives of repeated eigenvalues using singular value decomposition

An explicit formula is obtained for the first-order eigenvector derivative that corresponds to the eigenvector of a repeated eigenvalue, in the case of the nonself-adjoint eigenvalue problem. This method applies to the class of nondefective problems whose first eigenvalue derivatives of the repeated eigenvalues are distinct. A singular-value decomposition approach is used to compute four requisite bases for eigenspaces, as well as to keep track of the dimensions of state variables and the conditioning of the state equations.

Lim, Kyong B.↗

An adjoint view on flux consistency and strong wall boundary conditions to the Navier–Stokes equations

Inconsistent discrete expressions in the boundary treatment of Navier–Stokes solvers and in the definition of force objective functionals can lead to discrete-adjoint boundary treatments that are not a valid representation of the boundary conditions to the corresponding adjoint partial differential equations. The underlying problem is studied for an elementary 1D advection–diffusion problem first using a node-centred finite-volume discretisation. The defect of the boundary operators in the inconsistently defined discrete-adjoint problem leads to oscillations and becomes evident with the additional insight of the continuous-adjoint approach. A homogenisation of the discretisations for the primal boundary treatment and the force objective functional yields second-order functional accuracy and eliminates the defect in the discrete-adjoint boundary treatment. Subsequently, the issue is studied for aerodynamic Reynolds-averaged Navier–Stokes problems in conjunction with a standard finite-volume discretisation on median-dual grids and a strong implementation of noslip walls, found in many unstructured general-purpose flow solvers. Going out from a base-line discretisation of force objective functionals which is independent of the boundary treatment in the flow solver, two improved flux-consistent schemes are presented; based on either body wall-defined or farfield-defined control-volumes they resolve the dual inconsistency. The behaviour of the schemes is investigated on a sequence of grids in 2D and 3D.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Trajectory Optimization Using Adjoint Method and Chebyshev Polynomial Approximation for Minimizing Fuel Consumption During Climb

This paper describes two methods of trajectory optimization to obtain an optimal trajectory of minimum-fuel- to-climb for an aircraft. The first method is based on the adjoint method, and the second method is based on a direct trajectory optimization method using a Chebyshev polynomial approximation and cubic spine approximation. The approximate optimal trajectory will be compared with the adjoint-based optimal trajectory which is considered as the true optimal solution of the trajectory optimization problem. The adjoint-based optimization problem leads to a singular optimal control solution which results in a bang-singular-bang optimal control.

Chebyshev Polynomial↗

Adjoint operator approach to shape design for internal incompressible flows

The problem of determining the profile of a channel or duct that provides the maximum static pressure rise is solved. Incompressible, laminar flow governed by the steady state Navier-Stokes equations is assumed. Recent advances in computational resources and algorithms have made it possible to solve the direct problem of determining such a flow through a body of known geometry. It is possible to obtain a set of adjoint equations, the solution to which permits the calculation of the direction and relative magnitude of change in the diffuser profile that leads to a higher pressure rise. The solution to the adjoint problem can be shown to represent an artificially constructed flow. This interpretation provides a means to construct numerical solutions to the adjoint equations that do not compromise the fully viscous nature of the problem. The algorithmic and computational aspects of solving the adjoint equations are addressed. The form of these set of equations is similar but not identical to the Navier-Stokes equations. In particular some issues related to boundary conditions and stability are discussed.

Cabuk, H.↗

Cohesive phase-field fracture and a PDE constrained optimization approach to fracture inverse problems

In recent years there has been a proliferation of modeling techniques for forward predictions of crack propagation in brittle materials, including: phase-field/gradient damage models, peridynamics, cohesive-zone models, and G/XFEM enrichment techniques. However, progress on the corresponding inverse problems has been relatively lacking. Taking advantage of key features of existing modeling approaches, we propose a parabolic regularization of Barenblatt cohesive models which borrows extensively from previous phase-field and gradient damage formulations. An efficient explicit time integration strategy for this type of nonlocal fracture model is then proposed and justified. In addition, we present a C++ computational framework for computing in- put parameter sensitivities efficiently for explicit dynamic problems using the adjoint method. This capability allows for solving inverse problems involving crack propagation to answer interesting engineering questions such as: 1) what is the optimal design topology and material placement for a heterogeneous structure to maximize fracture resistance, 2) what loads must have been applied to a structure for it to have failed in an observed way, 3) what are the existing cracks in a structure given various experimental observations, etc. In this work, we focus on the first of these engineering questions and demonstrate a capability to automatically and efficiently compute optimal designs intended to minimize crack propagation in structures.

97 MATHEMATICS AND COMPUTING↗