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At least 55 records · Page 3

Capillary Water in 2-D Drying-Cracking Soil Sub-Grain Models: Morphology and Kinematics of Evaporation and Haines Jumps

Morphing of capillary water during the drying of a cluster of three wet grains is imaged and measured. The uniqueness of the tests is in the grains being long cylinders to make the system as close to a 2-D one as possible. In this way, the Laplace pressure depends on the only one curvature of the meniscus, which can easily be followed and is continuously image processed. The motion of liquid/gas interface, and its rate, as well as of contact angle and perimeter, are also monitored. The drying water body has been known to undergo two modes of re-morphing: a slow, evaporation rate-controlled one and a fast, inertia-driven instabilities of the interfaces. Two particular forms of dynamic re-morphing are being followed: one, called classically an “air entry,” which is a meniscus jump before its approaching the throat between the top and a bottom grain and another jump of the bottom contact, with a splitting of the meniscus into two between only two of the three grains. Associated dynamic variables, capillary pressure, and surface tension forces developing prior to and in conjunction with the instabilities of the menisci are presented in a companion paper by Hueckel et al..

54 ENVIRONMENTAL SCIENCES↗

Drought response transcriptomes are altered in poplar with reduced tonoplast sucrose transporter expression

Transgenic Populus tremula x alba (717-1B4) plants with reduced expression of a tonoplast sucrose efflux transporter, PtaSUT4, exhibit reduced shoot growth compared to wild type (WT) under sustained mild drought. The present study was undertaken to determine whether SUT4-RNAi directly or indirectly altered poplar predisposition and/or response to changes in soil water availability. While sucrose and hexose levels were constitutively elevated in shoot organs, expression responses to drought were most altered in the root tips of SUT4-RNAi plants. Prior to any drought treatment, constitutively elevated transcript levels of abscisic acid biosynthetic genes and bark/vegetative storage proteins suggested altered metabolism in root tips of RNAi plants. Stronger drought-stimulation of stress-inducible genes encoding late-embryogenesis-abundant proteins in transgenic roots was consistent with increased vulnerability to soil drying. Transcript evidence suggested an RNAi effect on intercellular water trafficking by aquaporins in stem xylem during soil drying and recovery. Co-expression network analysis predicted altered integration of abscisic acid sensing/signaling with ethylene and jasmonate sensing/signaling in RNAi compared to WT roots. The overall conclusion is that steepened shoot-root sugar gradient in RNAi plants increased sensitivity of root tips to decreasing soil water availability.

54 ENVIRONMENTAL SCIENCES↗

Rewetting of soil: Revisiting the origin of soil CO 2 emissions

Rewetting dry soils is associated with a burst of microbial activity and mineralization, which manifests itself as a pulse in soil CO 2 emissions, long-known as the Birch effect. In arid and semi-arid systems, soil CO 2 losses upon rewetting at the end of extended dry periods can contribute a significant fraction to the overall carbon (C) budget. Microbial biomass is one of the sources of mineralized C, as was demonstrated over 30 years ago (Kieft et al., 1987). The present paper offers a perspective on how the field has progressed since the 1987 paper was published in Soil Biology & Biochemistry, what it means in terms of current concerns about global climate change, and the needs and potential emphases of future research. Many studies since 1987 have addressed the origin of this CO 2 pulse, finding multiple possible C sources involving both biotic and abiotic processes. We propose that the magnitude of the rewetting event (Δψ) determines the relative contribution from the array of substrates that contribute to the soil CO 2 pulse upon rewetting. The magnitude of the CO 2 pulse is likely related to soil physical characteristics and to the size of the available C pool, which is partly controlled by plants. Further, the relative contributions of the mechanisms generating soil CO 2 pulses upon rewetting are likely to be modified by climate change. To understand and predict the magnitude of soil CO 2 pulses upon rewetting, we advocate continued cross-disciplinary research involving soil microbial ecology, soil physics, soil chemistry, as well as increased integration and recognition of the importance of plant-soil interactions in controlling the soil C pools contributing to soil CO 2 pulses.

54 ENVIRONMENTAL SCIENCES↗

Causes and Implications of Extreme Atmospheric Moisture Demand during the Record-Breaking 2011 Wildfire Season in the Southwestern United States

In 2011, exceptionally low atmospheric moisture content combined with moderately high temperatures to produce a record-high vapor pressure deficit (VPD) in the southwestern United States (SW). These conditions combined with record-low cold-season precipitation to cause widespread drought and extreme wildfires. Although interannual VPD variability is generally dominated by temperature, high VPD in 2011 was also driven by a lack of atmospheric moisture. The May–July 2011 dewpoint in the SW was 4.5 standard deviations below the long-term mean. Lack of atmospheric moisture was promoted by already very dry soils and amplified by a strong ocean-to-continent sea level pressure gradient and upper-level convergence that drove dry northerly winds and subsidence upwind of and over the SW. Subsidence drove divergence of rapid and dry surface winds over the SW, suppressing southerly moisture imports and removing moisture from already dry soils. Model projections developed for the fifth phase of the Coupled Model Intercomparison Project (CMIP5) suggest that by the 2050s warming trends will cause mean warm-season VPD to be comparable to the record-high VPD observed in 2011. CMIP5 projections also suggest increased interannual variability of VPD, independent of trends in background mean levels, as a result of increased variability of dewpoint, temperature, vapor pressure, and saturation vapor pressure. Increased variability in VPD translates to increased probability of 2011-type VPD anomalies, which would be superimposed on ever-greater background VPD levels. Although temperature will continue to be the primary driver of interannual VPD variability, 2011 served as an important reminder that atmospheric moisture content can also drive impactful VPD anomalies.

54 ENVIRONMENTAL SCIENCES↗

Subsurface Salts in Antarctic Dry Valley Soils

The distribution of water-soluble ions, major and minor elements, and other parameters were examined to determine the extent and effects of chemical weathering on cold desert soils. Patterns at the study sites support theories of multiple salt forming processes, including marine aerosols and chemical weathering of mafic minerals. Periodic solar-mediated ionization of atmospheric nitrogen might also produce high nitrate concentrations found in older sediments. Chemical weathering, however, was the major contributor of salts in Antarctic Dry Valleys. The Antarctic Dry Valleys represent a unique analog for Mars, as they are extremely cold and dry desert environments. Similarities in the climate, surface geology, and chemical properties of the Dry Valleys to that of Mars imply the possible presence of these soil formation mechanisms on Mars, other planets and icy satellites.

Englert, P.↗

Response of selected microoganisms to experimental planetary environments

A microbial population profile of mixed Cape Canaveral soil samples is presented. During this investigation a few organisms were isolated which exhibit the ability to grow at 3 C, 32 C, and 55 C. Growth curves are shown for three of these isolates, one of which grows extremely well at all three temperatures. Also included are studies dealing with growth of soil populations at zero and subzero temperatures. Results indicate growth at 0 C and -5 C, but not at 15 C or -65 C. The effect of storage temperature on dry soil is presented, and results show that psychrophilic populations decrease when soil is stored at room temperature, but do not decrease when soil is stored at -65 C. Results of an experiment with the simulated Martian environment are presented and indicate that nonsporeforming rods, sporeforming rods, and cocci can reproduce in the simulated environment when nutrients and moisture are supplied. The sporeforming rods are the predominant suvivors when dry soil is subjected to this environment.

Foster, T. L.↗

Assay of the Martian Regolith with Neutrons

The purpose of the research is to combine experiments and Monte Carlo transport of neutrons through volume of soil in an attempt to model neutron leakage from planetary surfaces. Emphasis is given to the change of neutron spectra as a function of water content and location. During the first stage of effort, two experiments were conducted in which leakage of neutrons from a Pu-Be source through about 30 g/cm(exp 2) of soil were measured with several counters. A Monte Carlo code, MCNP, has been used to model many of the 100 individual runs of the experiment. Hydrogen is the element that has the most dramatic effect on the neutron spectrum and its effect on the neutron spectrum is almost the same whether it is in the form of water or polyethylene. In order to simulate various water configurations, sheets of polyethylene have been used between layers of soil as well as water in several concentrations up to 18%. Comparison of experimental results to theoretical predictions made with the MCNP code were disappointing for low concentrations of water. We have made extensive calculations to see if room return could be the cause of the discrepancies. Water concentrations of the 'dry' soil were measured by two different laboratories and differed only by 0.5%. We have made calculations to optimize the next experiment and are investigating other methods of determining the water content of 'dry' soil.

Drake, Darrell M.↗

Calculations of the spectral nature of the microwave emission from soils

The brightness temperatures for a set of soil profiles observed at USDA facilities in Arizona and Georgia were calculated at the wavelengths of 2.8, 6, 11, 21, and 49 cm using a coherent radiative transfer model. The soil moisture sampling depth is found to be a function of wavelength and is in the range 0.06 to 0.1 of a wavelength. The thermal sampling depth also depends on wavelength and is approximately equal to one wavelength at dry soil condition and 0.1 - 0.5 wavelengths at wet soil conditions. Calculated values of emissivity show strong diurnal variations when the soils are wet, while there is little diurnal change when the soil is dry. The soil moistures within the four depth intervals of 0-2, 0-5, 0-9, and 0-15 cm were parameterized as function of the calculated emissivity and brightness temperature. Best-fit parameters and correlation coefficients are presented for five wavelengths. Interrelationships among the effective temperature, surface temperature, and emissivity are displayed.

Mo, T.↗

A subset of viruses thrives following microbial resuscitation during rewetting of a seasonally dry California grassland soil

Viruses are abundant, ubiquitous members of soil communities that kill microbial cells, but how they respond to perturbation of soil ecosystems is essentially unknown. Here, we investigate lineage-specific virus-host dynamics in grassland soil following “wet-up”, when resident microbes are both resuscitated and lysed after a prolonged dry period. Quantitative isotope tracing, time-resolved metagenomics and viromic analyses indicate that dry soil holds a diverse but low biomass reservoir of virions, of which only a subset thrives following wet-up. Viral richness decreases by 50% within 24 h post wet-up, while viral biomass increases four-fold within one week. Though recent hypotheses suggest lysogeny predominates in soil, our evidence indicates that viruses in lytic cycles dominate the response to wet-up. We estimate that viruses drive a measurable and continuous rate of cell lysis, with up to 46% of microbial death driven by viral lysis one week following wet-up. Thus, viruses contribute to turnover of soil microbial biomass and the widely reported CO 2 efflux following wet-up of seasonally dry soils.

54 ENVIRONMENTAL SCIENCES↗

Internship Progress Summary: Fall 2016

This fall I had the opportunity to work at Los Alamos National Laboratory for the Technology Applications engineering group. I assisted two main projects during my appointment, both related to the Lab’s mission statement: “To solve national security challenges through scientific excellence.” My first project, a thermal source transfer unit, involved skills such as mechanical design, heat transfer simulation, and design analysis. The goal was to create a container that could protect a heat source and regulate its temperature during transit. I generated several designs, performed heat transfer simulations, and chose a design for prototyping. The second project was a soil drying unit for use in post blast sample analysis. To ensure fast and accurate sample processing, agents in the field wanted a system that could process wet dirt and turn it into dry powder. We designed a system of commercially available parts, and we tested the systems to determine the best methods and processes.

42 ENGINEERING↗

Ecosystem and soil respiration radiocarbon detects old carbon release as a fingerprint of warming and permafrost destabilization with climate change

The permafrost region has accumulated organic carbon in cold and waterlogged soils over thousands of years and now contains three times as much carbon as the atmosphere. Global warming is degrading permafrost with the potential to accelerate climate change as increased microbial decomposition releases soil carbon as greenhouse gases. A 19-year time series of soil and ecosystem respiration radiocarbon from Alaska provides long-term insight into changing permafrost soil carbon dynamics in a warmer world. Nine per cent of ecosystem respiration and 23% of soil respiration observations had radiocarbon values more than 50‰ lower than the atmospheric value. Furthermore, the overall trend of ecosystem and soil respiration radiocarbon values through time decreased more than atmospheric radiocarbon values did, indicating that old carbon degradation was enhanced. Boosted regression tree analyses showed that temperature and moisture environmental variables had the largest relative influence on lower radiocarbon values. This suggested that old carbon degradation was controlled by warming/permafrost thaw and soil drying together, as waterlogged soil conditions could protect soil carbon from microbial decomposition even when thawed. Overall, changing conditions increasingly favoured the release of old carbon, which is a definitive fingerprint of an accelerating feedback to climate change as a consequence of warming and permafrost destabilization.

54 ENVIRONMENTAL SCIENCES↗

Spectral Unmixing of Vegetation, Soil and Dry Carbon in Arid Regions: Comparing Multispectral and Hyperspectral Observations

Remote sensing of vegetation cover and condition is critically needed to understand the impacts of land use and climate variability in and and semi-arid regions. However, remote sensing of vegetation change in these environments is difficult for several reasons. First, individual plant canopies are typically small and do not reach the spatial scale of typical Landsat-like satellite image pixels. Second, the phenological status and subsequent dry carbon (or non-photosynthetic) fraction of plant canopies varies dramatically in both space and time throughout and and semi-arid regions. Detection of only the 'green' part of the vegetation using a metric such as the normalized difference vegetation index (NDVI) thus yields limited information on the presence and condition of plants in these ecosystems. Monitoring of both photosynthetic vegetation (PV) and non-photosynthetic vegetation (NPV) is needed to understand a range of ecosystem characteristics including vegetation presence, cover and abundance, physiological and biogeochemical functioning, drought severity, fire fuel load, disturbance events and recovery from disturbance.

Asner, Gregory P.↗

Prediction skill of the 2012 U.S. Great Plains flash drought in Subseasonal Experiment (SubX) models

Rapid-onset droughts, known as flash droughts, can have devastating impacts on agriculture, water resources, and ecosystems. The ability to predict flash droughts in advance would greatly enhance our preparation for them and potentially mitigate their impacts. Here, we investigate the prediction skill of the extreme 2012 flash drought over the U.S. Great Plains at subseasonal lead times (3 weeks or more in advance) in global forecast systems participating in the Subseasonal Experiment (SubX). An additional comprehensive set of subseasonal hindcasts with NASA’s GEOS model, a SubX model with relatively high prediction skill, was performed to investigate the separate contributions of atmospheric and land initial conditions to flash drought prediction skill. The results show that the prediction skill of the SubX models is quite variable. While skillful predictions are restricted to within the first two forecast weeks in most models, skill is considerably better (3-4 weeks or more) for certain models and initialization dates. The enhanced prediction skill is found to originate from two robust sources: 1) accurate soil moisture initialization once dry soil conditions are established, and 2) the satisfactory representation of quasi-stationary cross-Pacific Rossby wave trains that lead to the rapid intensification of flash droughts. Evidence is provided that the importance of soil moisture initialization applies more generally to central U.S. summer flash droughts. Our results corroborate earlier findings that accurate soil moisture initialization is important for skillful subseasonal forecasts and highlight the need for additional research on the sources and predictability of drought-inducing quasi-stationary atmospheric circulation anomalies.

Anthony M DeAngelis↗

Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil

Abstract Microbial activity increases after rewetting dry soil, resulting in a pulse of carbon mineralization and nutrient availability. The biogeochemical responses to wet-up are reasonably well understood and known to be microbially mediated. Yet, the population level dynamics, and the resulting changes in microbial community patterns, are not well understood as ecological phenomena. Here, we used sequencing of 16S rRNA genes coupled with heavy water (H218O) DNA quantitative stable isotope probing to estimate population-specific rates of growth and mortality in response to a simulated wet-up event in a California annual grassland soil. Bacterial growth and mortality responded rapidly to wet-up, within 3 h, and continued throughout the 168 h incubation, with patterns of sequential growth observed at the phylum level. Of the 37 phyla detected in the prewet community, growth was found in 18 phyla while mortality was measured in 26 phyla. Rapid growth and mortality rates were measurable within 3 h of wet-up but had contrasting characteristics; growth at 3 h was dominated by select taxa within the Proteobacteria and Firmicutes, whereas mortality was taxonomically widespread. Furthermore, across the community, mortality exhibited density-independence, consistent with the indiscriminate shock resulting from dry-down and wet-up, whereas growth was density-dependent, consistent with control by competition or predation. Total aggregated growth across the community was highly correlated with total soil CO2 production. Together, these results illustrate how previously “invisible” population responses can translate quantitatively to emergent observations of ecosystem-scale biogeochemistry.

58 GEOSCIENCES↗