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At least 55 records · Page 3

FEOTS v0.0.0: a new offline code for the fast equilibration of tracers in the ocean

Abstract. In this paper we introduce a new software framework for the offline calculation of tracer transport in the ocean. The Fast Equilibration of Ocean Tracers Software (FEOTS) is an end-to-end set of tools to efficiently calculate tracer distributions on a global or regional sub-domain using transport operators diagnosed from a comprehensive ocean model. To the best of our knowledge, this is the first application of a transport matrix model to an eddying ocean state. While a Newton–Krylov-based equilibration capability is still under development and not presented here, we demonstrate in this paper the transient modeling capabilities of FEOTS in an application focused on the Argentine Basin, where intense eddy activity and the Zapiola Anticyclone lead to strong mixing of water masses. The demonstration illustrates progress in developing offline passive tracer simulation capabilities, while highlighting the challenges of the impulse response functions approach in capturing tracer transports by a non-linear advection scheme. Our future work will focus on improving the computational efficiency of the code to reduce time-to-solution, using different basis functions to better represent non-linear advection operators, applying FEOTS to a parent model with unstructured grids (Ocean Model for Prediction Across Scales, MPAS-Ocean), and fully implementing a Newton–Krylov steady-state solver.

54 ENVIRONMENTAL SCIENCES↗

FAIR AI models in high energy physics

Abstract The findable, accessible, interoperable, and reusable (FAIR) data principles provide a framework for examining, evaluating, and improving how data is shared to facilitate scientific discovery. Generalizing these principles to research software and other digital products is an active area of research. Machine learning models—algorithms that have been trained on data without being explicitly programmed—and more generally, artificial intelligence (AI) models, are an important target for this because of the ever-increasing pace with which AI is transforming scientific domains, such as experimental high energy physics (HEP). In this paper, we propose a practical definition of FAIR principles for AI models in HEP and describe a template for the application of these principles. We demonstrate the template’s use with an example AI model applied to HEP, in which a graph neural network is used to identify Higgs bosons decaying to two bottom quarks. We report on the robustness of this FAIR AI model, its portability across hardware architectures and software frameworks, and its interpretability.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Virtual Engineering of Low-Temperature Conversion

In this work, we present the development of an overarching software framework and supporting multiphysics models to simulate the end-to-end process of biomass conversion. This virtual engineering (VE) software is designed with the goal of accelerating research and development and reducing risk for market-relevant biomass conversion processes. We currently support multiple models, computing paradigms, and fidelities representing the steps of feedstock pretreatment, enzymatic hydrolysis, and bioconversion. Although this VE approach was developed to support a biomass workflow, we have designed each component in a way that allows us to easily support new domains, unit models, and feedstocks. We begin by presenting the user-facing aspects of the VE software and highlight how simulated elements are defined and linked by VE functions. We then present an overview of the high-fidelity computational fluid dynamics (CFD) models developed to support our target domain before segueing into our efforts to develop accurate and fast surrogate models, capturing the salient outcomes from the CFD simulations in a significantly less computationally demanding manner. We then present how VE calculations interface with a commercial techno-economic analysis software, Aspen Plus. We conclude by presenting VE case studies that leverage these methods and discuss how our methods can be extended to support a wide variety of accelerated biofuel commercialization pathways in the future.

biofuel↗

Accelerating End-to-End Deep Learning for Particle Reconstruction using CMS open data

Machine learning algorithms are gaining ground in high energy physics for applications in particle and event identification, physics analysis, detector reconstruction, simulation and trigger. Currently, most data-analysis tasks at LHC experiments benefit from the use of machine learning. Incorporating these computational tools in the experimental framework presents new challenges. This paper reports on the implementation of the end-to-end deep learning with the CMS software framework and the scaling of the end-to-end deep learning with multiple GPUs. The end-to-end deep learning technique combines deep learning algorithms and low-level detector representation for particle and event identification. We demonstrate the end-to-end implementation on a top quark benchmark and perform studies with various hardware architectures including single and multiple GPUs and Google TPU.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Phoenix: A Scalable Streaming Hypergraph Analysis Framework

We present Phoenix, a scalable hypergraph analytics framework for data analytics and knowledge discovery that was implemented on the leadership class computing platforms at Oak Ridge National Laboratory (ORNL). Our software framework comprises a distributed implementation of a streaming server architecture which acts as a gateway for various hypergraph generators/external sources to connect. Phoenix has the capability to utilize diverse hypergraph generators, including HyGen, a very large-scale hypergraph generator developed by ORNL. Phoenix incorporates specific algorithms for efficient data representation by exploiting hidden structures of the hypergraphs. Our experimental results demonstrate Phoenix’s scalable and stable performance on massively parallel computing platforms. Phoenix’s superior performance is due to the merging of high-performance computing with data analytic.

Kurte, Kuldeep↗

Enabling Interconnected Science Workflows through an Adapter Approach

The INTERSECT Software framework project aims to create an open federated library that connects, coordinates, and controls systems in the scientific domain. It features the Adapter, a flexible and extensible interface inspired by the Adapter design pattern in object-oriented programming. By utilizing Adapters, the INTERSECT SDK enables effective communication and coordination within a diverse ecosystem of systems. This adaptability facilitates the execution of complex operations within the framework, promoting collaboration and efficient workflow management in scientific research. Additionally, the generalizability of Adapters and their patterns enhances their utility in other scientific software projects and challenges.

McGaha, Jesse↗

CASTLE: Conflict Analysis Strategy Testing Laboratory Environment v.1.0.0

SAND2024-01743O The Conflict Analysis Strategy Testing Laboratory Environment (CASTLE) is a software framework that enables and simplifies building a novel, turn-based strategy game in which it can define its own rules, maps, pieces, and interactions. The software is for novice to experienced programmers with some knowledge of Unity3D, a tool used in game production. CASTLE includes a library of common game mechanics used for strategic wargames and traditional board games, such as cards, tokens, dice, and grid maps. It follows design principles popularized by the video game industry and uses singletons for managing portions of the code. CASTLE builds on Unity's component-based design and can respond to engine events during execution. Among the numerous user-friendly features: Build games quickly and cost-effectively Network in real-time and apply data to new games developed on the framework Host multiple participants online Connect rule- or machine learning-based agents to a CASTLE game to serve as opponents or to simulate games Collect data collection from players and in-game behaviors Create a survey to gather demographics or opinions from players Store data locally or save it to an external database through Representational State Transfer (REST) functions CASTLE, which was prototyped using Microsoft Azure, is also designed for easily distributing online games using popular cloud services. The multiplayer functionality includes an agent interface, allowing developers to construct AI players that can substitute for humans in any of the games. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Fabian, Nathan↗

MFIX-Exa: A path toward exascale CFD-DEM simulations

MFIX-Exa is a computational fluid dynamics–discrete element model (CFD-DEM) code designed to run efficiently on current and next-generation supercomputing architectures. MFIX-Exa combines the CFD-DEM expertise embodied in the MFIX code—which was developed at NETL and is used widely in academia and industry—with the modern software framework, AMReX, developed at LBNL. The fundamental physics models follow those of the original MFIX, but the combination of new algorithmic approaches and a new software infrastructure will enable MFIX-Exa to leverage future exascale machines to optimize the modeling and design of multiphase chemical reactors.

97 MATHEMATICS AND COMPUTING↗

System Modeling Frameworks for Wind Turbines and Plants: Review and Requirements Specifications

System modeling frameworks for wind turbines and plants are used by research groups and industry to design wind energy systems that take into account key trade-offs across performance, cost, and reliability at both the turbine and plant level. The frameworks are exercised using a variety of multi-disciplinary design, analysis and optimization (MDAO) methods. To improve inter-operability and foster collaboration, this report proposes a classification system for the frameworks along dimensions of model fidelity and scope. The classification system is first motivated with reviews the state-of-the-art in the development of software frameworks for integrated wind turbine and plant simulation. Within each major wind turbine and power plant subsystem, a matrix is developed for the disciplines used and the fidelity levels with which each discipline can be modeled. The existing frameworks are then classified according to the matrix. Next, an ontology is proposed that will allow for standardizing how data is transferred between the most common discipline-fidelity combinations used in the frameworks. A common representation of data creates the ability to 1) share system descriptions and analysis results, supporting more transparent benchmarks and comparison, and 2) integrate models together into workflows within and across organizations for improving the efficiency and performance of wind turbine and power plant design processes. Ultimately, this integration leads to better overall wind energy system designs with high performance and low costs.

17 WIND ENERGY↗

Constitutive Models via Automatic Differentiation v.1.0.0

SAND2024-00905O Constitutive Models via Automatic Differentiation (CMAD) provides a software framework for solving constitutive or material model calibration problems. It relies on JAX's automatic differentiation capabilities to compute the derivatives needed for both forward and adjoint sensitivity analyses. The software can be used to implement constitutive models and calibrate the parameters from experimental data. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Seidl, Daniel↗

OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulations

We present OpenAWSEM and Open3SPN2, new cross-compatible implementations of coarse-grained models for protein (AWSEM) and DNA (3SPN2) molecular dynamics simulations within the OpenMM framework. These new implementations retain the chemical accuracy and intrinsic efficiency of the original models while adding GPU acceleration and the ease of forcefield modification provided by OpenMM’s Custom Forces software framework. By utilizing GPUs, we achieve around a 30-fold speedup in protein and protein-DNA simulations over the existing LAMMPS-based implementations running on a single CPU core. We showcase the benefits of OpenMM’s Custom Forces framework by devising and implementing two new potentials that allow us to address important aspects of protein folding and structure prediction and by testing the ability of the combined OpenAWSEM and Open3SPN2 to model protein-DNA binding. The first potential is used to describe the changes in effective interactions that occur as a protein becomes partially buried in a membrane. We also introduced an interaction to describe proteins with multiple disulfide bonds. Using simple pairwise disulfide bonding terms results in unphysical clustering of cysteine residues, posing a problem when simulating the folding of proteins with many cysteines. We now can computationally reproduce Anfinsen’s early Nobel prize winning experiments by using OpenMM’s Custom Forces framework to introduce a multi-body disulfide bonding term that prevents unphysical clustering. Our protein-DNA simulations show that the binding landscape is funneled towards structures that are quite similar to those found using experiments. In summary, this paper provides a simulation tool for the molecular biophysics community that is both easy to use and sufficiently efficient to simulate large proteins and large protein-DNA systems that are central to many cellular processes. These codes should facilitate the interplay between molecular simulations and cellular studies, which have been hampered by the large mismatch between the time and length scales accessible to molecular simulations and those relevant to cell biology.

59 BASIC BIOLOGICAL SCIENCES↗

Development of Real-Time High-Density Pulsar Data Transmission and Processing for Grid Synchronization

Taking advantage of the extreme stability of the pulsar period, it can serve as the timing source for grid synchronization to compensate for the timing drift instigated by the loss of GPS signal. Nevertheless, the real-time transmission and processing of the pulsar data suffer from its high-frequency data rate, varying from megahertz to gigahertz, resulting in reduced computing speed and increased time delay. To mitigate this issue, the hardware and software frameworks are implemented for the high-density pulsar data transmission and processing for grid synchronization in this research. Initially, the high-density pulsar data is transferred using open-source software. The complementary duty cycle timing module is designed to coordinate the operation of the dual-channel high-speed interface and software. Subsequently, the multiple-threading is applied to the receiving, parsing, and splicing pulsar data. Next, the pulsar signal extraction method is implemented based on the polyphase filterbank and time of arrival estimation. Ultimately, real-time performance verification experiments are carried out for different components under two hardware platforms. Finally, the results demonstrate that only 0.482 s is required for processing 4 Gigabyte data through multiple-threading, which is 3.8 times faster than the single thread. The pulsar signal extraction can also be executed within 707 ms for 4.8 seconds of data, thereby indicating that real-time requirements can be met.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Building an Efficient Cluster Cosmology Software Package for Modeling Cluster Counts and Lensing

We introduce a software suite developed for galaxy cluster cosmological analysis with the Dark Energy Survey Data. Cosmological analyses based on galaxy cluster number counts and weak-lensing measurements need efficient software infrastructure to explore an increasingly large parameter space, and account for various cosmological and astrophysical effects. Our software package is designed to model the cluster observables in a wide-field optical survey, including galaxy cluster counts, their averaged weak-lensing masses, or the cluster's averaged weak-lensing radial signals. To ensure maximum efficiency, this software package is developed in C++ in the CosmoSIS software framework, making use of the CUBA integration library. We also implement a testing and validation scheme to ensure the quality of the package. We demonstrate the effectiveness of this development by applying the software to the Dark Energy Survey Year 1 galaxy cluster cosmological data sets, and acquired cosmological constraints that are consistent with the fiducial Dark Energy Survey analysis.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

A multiphysics coupling framework for exascale simulation of fracture evolution in subsurface energy applications

Predicting the evolution of fractured media is challenging due to coupled thermal, hydrological, chemical and mechanical processes that occur over a broad range of spatial scales, from the microscopic pore scale to field scale. We present a software framework and scientific workflow that couples the pore scale flow and reactive transport simulator Chombo-Crunch with the field scale geomechanics solver in GEOS to simulate fracture evolution in subsurface fluid-rock systems. This new multiphysics coupling capability comprises several novel features. An HDF5 data schema for coupling fracture positions between the two codes is employed and leverages the coarse resolution of the GEOS mechanics solver which limits the size of data coupled, and is, thus, not taxed by data resulting from the high resolution pore scale Chombo-Crunch solver. The coupling framework requires tracking of both before and after coarse nodal positions in GEOS as well as the resolved embedded boundary in Chombo-Crunch. We accomplished this by developing an approach to geometry generation that tracks the fracture interface between the two different methodologies. The GEOS quadrilateral mesh is converted to triangles which are organized into bins and an accessible tree structure; the nodes are then mapped to the Chombo representation using a continuous signed distance function that determines locations inside, on and outside of the fracture boundary. The GEOS positions are retained in memory on the Chombo-Crunch side of the coupling. The time stepping cadence for coupled multiphysics processes of flow, transport, reactions and mechanics is stable and demonstrates temporal reach to experimental time scales. The approach is validated by demonstration of 9 days of simulated time of a core flood experiment with fracture aperture evolution due to invasion of carbonated brine in wellbore-cement and sandstone. We also demonstrate usage of exascale computing resources by simulating a high resolution version of the validation problem on OLCF Frontier.

97 MATHEMATICS AND COMPUTING↗

Rooftop unit comparison calculator: a framework for comparing performance of rooftop units with building energy simulation

The applications of building energy simulation (BES) in designing heating, ventilation, and air conditioning (HVAC) systems are limited by the high costs of developing simulation models and the lack of references for determining the model parameters. This paper presents a software framework for selecting designs for rooftop unit HVAC (RTU) systems with BES. Specifically, this framework reduces the cost of using BES by automating the generation of EnergyPlus models. It also employs a systematic method for determining model parameters based on well-accepted datasets. We applied this framework in a comprehensive assessment of an advanced design of RTU systems in which 478 EnergyPlus models were developed without human involvement. The assessment reveals that replacing a constant-speed fan/coil with a multiple-speed fan/coil may not guarantee better overall performance. In conclusion, it also suggests the benefits of replacing furnace coils with heat pumps are subject to utility cost, weather conditions, and heating load profiles.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Low Size, Weight, and Power Neuromorphic Computing to Improve Combustion Engine Efficiency

Neuromorphic computing offers one path forward for AI at the edge. However, accessing and effectively utilizing a neuromorphic hardware platform is non-trivial. In this work, we present a complete pipeline for neuromorphic computing at the edge, including a small, inexpensive, low-power, FPGA-based neuromorphic hardware platform, a training algorithm for designing spiking neural networks for neuromorphic hardware, and a software framework for connecting those components. We demonstrate this pipeline on a real-world application, engine control for a spark-ignition internal combustion engine. We illustrate how we connect engine simulations with neuromorphic hardware simulations and training software to produce hardware-compatible spiking neural networks that perform engine control to improve fuel efficiency. We present initial results on the performance of these spiking neural networks and illustrate that they outperform open-loop engine control. We also give size, weight, and power estimates for a deployed solution of this type.

Schuman, Catherine↗

ROSE: A reduced-order scattering emulator for optical models

A new generation of phenomenological optical potentials requires robust calibration and uncertainty quantification, motivating the use of Bayesian statistical methods. These Bayesian methods usually require calculating observables for thousands or even millions of parameter sets, making fast and accurate emulators highly desirable or even essential. Emulating scattering across different energies or with interactions such as optical potentials is challenging because of the nonaffine parameter dependence, meaning the parameters do not all factorize from individual operators. Here we introduce and demonstrate the reduced-order scattering emulator ( ROSE ) framework, a reduced basis emulator that can handle nonaffine problems. ROSE is fully extensible and works within the publicly available band framework software suite for calibration, model mixing, and experimental design. As a demonstration problem, we use ROSE to calibrate a realistic nucleon-target scattering model through the calculation of elastic cross sections. This problem shows the practical value of the ROSE framework for Bayesian uncertainty quantification with controlled trade-offs between emulator speed and accuracy as compared to high-fidelity solvers. Finally, planned extensions of ROSE are discussed.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

BuildingsBench: A Benchmark for Universal Building Load Forecasting [SWR-23-51]

The residential and commercial building stock in the United States is responsible for a significant percentage of energy consumption and greenhouse gas emissions. Electrification of end-uses, as well as decarbonizing the electrical grid through renewable energy sources such as solar and wind, constitutes the pathway to zero-emission buildings. Forecasting day-ahead building energy consumption is an integral part of this solution. Currently, specialized forecasting models are hand-made for each individual building, which is time-consuming, expensive, and leads to duplicated efforts. BuildingsBench is a Python software framework for training and comparing generalized machine learning models for universal building load forecasting. This challenge tasks a single foundational model to generalize its forecasts for a wide variety of buildings, across geographic regions, building types, weather patterns, and more. This software provide code for pre-training such models and subsequently evaluating their performance on a suite of hundreds of diverse real and synthetic buildings. BuildingsBench is a platform for: - Large-scale pretraining with the synthetic Buildings-900K dataset for short-term load forecasting (STLF). Buildings-900K is statistically representative of the entire U.S. building stock and is extracted from the NREL End-Use Load Profiles database. - Benchmarking on two tasks evaluating generalization: zero-shot STLF and transfer learning for STLF. We provide an index-based PyTorch Dataset for large-scale pretraining, easy data loading for multiple real building energy consumption datasets as PyTorch Tensors or Pandas DataFrames, simple (persistence) to advanced (transformer) baselines, metrics management, and more.

Emami, Patrick↗