Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “Sensitivity profiles”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 55 records · Page 3

TreeSAPP: the Tree-based Sensitive and Accurate Phylogenetic Profiler

Microbial communities drive matter and energy transformations integral to global biogeochemical cycles, yet many taxonomic groups facilitating these processes remain poorly represented in biological sequence databases. Due to this missing information, taxonomic assignment of sequences from environmental genomes remains inaccurate. We present the Tree-based Sensitive and Accurate Phylogenetic Profiler (TreeSAPP) software for functionally and taxonomically classifying genes, reactions and pathways from genomes of cultivated and uncultivated microorganisms using reference packages representing coding sequences mediating multiple globally relevant biogeochemical cycles. TreeSAPP uses linear regression of evolutionary distance on taxonomic rank to improve classifications, assigning both closely related and divergent query sequences at the appropriate taxonomic rank. TreeSAPP is able to provide quantitative functional and taxonomic classifications for both assembled and unassembled sequences and files supporting interactive tree of life visualizations.

54 ENVIRONMENTAL SCIENCES↗

The mean ozone profile and its temperature sensitivity in the upper stratosphere and lower mesosphere - An analysis of LIMS observations

Multiple simultaneous LIMS (Limb Infrared Monitor of the Stratosphere) observations of both O3 and temperature T in the upper stratosphere and lower mesosphere are analyzed to derive O3-T correlations for comparisons with model calculations. The zonally averaged O3 profile is compared with results from a simplified photochemical model that assumes O3 to be in a photochemical steady state. The model profile is systematically lower than the observed profile. Key parameters are identified in which changes can systematically increase the O3 profile in both the stratosphere and the mesosphere. The LIMS-derived values for the sensitivity of O3 to changes in T are compared with equilibrium model calculations which include the T-driven opacity feedback effect on photodissociation rate constants. The theoretical O3 response to temperature perturbations is investigated. It is shown how the O3-T sensitivity coefficient is affected by zonal and vertical advection terms as well as by the photochemical coupling between O3 and T.

Froidevaux, Lucien↗

Kinetic Properties of Microbial Exoenzymes Vary With Soil Depth but Have Similar Temperature Sensitivities Through the Soil Profile

Current knowledge of the mechanisms driving soil organic matter (SOM) turnover and responses to warming is mainly limited to surface soils, although over 50% of global soil carbon is contained in subsoils. Deep soils have different physicochemical properties, nutrient inputs, and microbiomes, which may harbor distinct functional traits and lead to different SOM dynamics and temperature responses. We hypothesized that kinetic and thermal properties of soil exoenzymes, which mediate SOM depolymerization, vary with soil depth, reflecting microbial adaptation to distinct substrate and temperature regimes. We determined the Michaelis-Menten (MM) kinetics of three ubiquitous enzymes involved in carbon (C), nitrogen (N) and phosphorus (P) acquisition at six soil depths down to 90 cm at a temperate forest, and their temperature sensitivity based on Arrhenius/ Q 10 and Macromolecular Rate Theory (MMRT) models over six temperatures between 4–50°C. Maximal enzyme velocity ( V max ) decreased strongly with depth for all enzymes, both on a dry soil mass and a microbial biomass C basis, whereas their affinities increased, indicating adaptation to lower substrate availability. Surprisingly, microbial biomass-specific catalytic efficiencies also decreased with depth, except for the P-acquiring enzyme, indicating distinct nutrient demands at depth relative to microbial abundance. These results suggested that deep soil microbiomes encode enzymes with intrinsically lower turnover and/or produce less enzymes per cell, reflecting distinct life strategies. The relative kinetics between different enzymes also varied with depth, suggesting an increase in relative P demand with depth, or that phosphatases may be involved in C acquisition. V max and catalytic efficiency increased consistently with temperature for all enzymes, leading to overall higher SOM-decomposition potential, but enzyme temperature sensitivity was similar at all depths and between enzymes, based on both Arrhenius/ Q 10 and MMRT models. In a few cases, however, temperature affected differently the kinetic properties of distinct enzymes at discrete depths, suggesting that it may alter the relative depolymerization of different compounds. We show that soil exoenzyme kinetics may reflect intrinsic traits of microbiomes adapted to distinct soil depths, although their temperature sensitivity is remarkably uniform. These results improve our understanding of critical mechanisms underlying SOM dynamics and responses to changing temperatures through the soil profile.

59 BASIC BIOLOGICAL SCIENCES↗

On the reduction of occultation light curves

The two basic methods of reducing occultation light curves - curve fitting and inversion - are reviewed and compared. It is shown that the curve fitting methods have severe problems of nonuniqueness. In addition, in the case of occultation curves dominated by spikes, it is not clear that such solutions are meaningful. The inversion method does not suffer from these drawbacks. Methods of deriving temperature profiles from refractivity profiles are then examined. It is shown that, although the temperature profiles are sensitive to small errors in the refractivity profile, accurate temperatures can be obtained, particularly at the deeper levels of the atmosphere. The ambiguities that arise when the occultation curve straddles the turbopause are briefly discussed.

Wasserman, L.↗

Fidelity and enhanced sensitivity of differential transcription profiles following linear amplification of nanogram amounts of endothelial mRNA

Although mRNA amplification is necessary for microarray analyses from limited amounts of cells and tissues, the accuracy of transcription profiles following amplification has not been well characterized. We tested the fidelity of differential gene expression following linear amplification by T7-mediated transcription in a well-established in vitro model of cytokine [tumor necrosis factor alpha (TNFalpha)]-stimulated human endothelial cells using filter arrays of 13,824 human cDNAs. Transcriptional profiles generated from amplified antisense RNA (aRNA) (from 100 ng total RNA, approximately 1 ng mRNA) were compared with profiles generated from unamplified RNA originating from the same homogeneous pool. Amplification accurately identified TNFalpha-induced differential expression in 94% of the genes detected using unamplified samples. Furthermore, an additional 1,150 genes were identified as putatively differentially expressed using amplified RNA which remained undetected using unamplified RNA. Of genes sampled from this set, 67% were validated by quantitative real-time PCR as truly differentially expressed. Thus, in addition to demonstrating fidelity in gene expression relative to unamplified samples, linear amplification results in improved sensitivity of detection and enhances the discovery potential of high-throughput screening by microarrays.

Evaluation Studies↗

The sensitivity of H alpha profiles to rapid electron beam fluctuations

In order to understand the temporal relationship between H alpha and hard X-ray emission predicted by the nonthermal electron thick target model of impulsive-phase energy transport the time-dependent theoretical H alpha profiles were computed for the dynamic model atmospheres of Fisher, Canfield, and McClymont, which simulate the effects of an impulsively initiated power-law beam of electrons. On the basis of the physical analysis it was expected that a very rapid H alpha response to an instantaneous increase in the flux of a nonthermal deka-keV electron beam, as compared to the timescale associated with the propagation of these electrons over characteristic flare coronal loop spatial scales. It was concluded that observational efforts to test the thick target nonthermal electron model through detection of impulsive H alpha brightenings associated with impulsive hard X-ray or microwave bursts should initially focus attention on the H alpha line center. Additional simultaneous blue-wing measurements will have substantial diagnostic potential.

Canfield, Richard C.↗

Development and Evaluation of a High Sensitivity DIAL System for Profiling Atmospheric CO2

A ground-based 2-micron Differential Absorption Lidar (DIAL) CO2 profiling system for atmospheric boundary layer studies and validation of space-based CO2 sensors is being developed and tested at NASA Langley Research Center as part of the NASA Instrument Incubator Program. To capture the variability of CO2 in the lower troposphere a precision of 1-2 ppm of CO2 (less than 0.5%) with 0.5 to 1 km vertical resolution from near surface to free troposphere (4-5 km) is one of the goals of this program. In addition, a 1% (3 ppm) absolute accuracy with a 1 km resolution over 0.5 km to free troposphere (4-5 km) is also a goal of the program. This DIAL system leverages 2-micron laser technology developed under NASA's Laser Risk Reduction Program (LRRP) and other NASA programs to develop new solid-state laser technology that provides high pulse energy, tunable, wavelength-stabilized, and double-pulsed lasers that are operable over pre-selected temperature insensitive strong CO2 absorption lines suitable for profiling of lower tropospheric CO2. It also incorporates new high quantum efficiency, high gain, and relatively low noise phototransistors, and a new receiver/signal processor system to achieve high precision DIAL measurements. This presentation describes the capabilities of this system for atmospheric CO2 and aerosol profiling. Examples of atmospheric measurements in the lidar and DIAL mode will be presented.

Ismail, Syed↗

Ares I-X Test Flight Reference Trajectory Development

Ares I-X was the first test flight of NASA's Constellation Program's Ares I crew launch vehicle. Ares I is a two stage to orbit launch vehicle that provides crew access to low Earth orbit for NASA's future manned exploration missions. The Ares I first stage consists of a Shuttle solid rocket motor (SRM) modified to include an additional propellant segment and a liquid propellant upper stage with an Apollo J2X engine modified to increase its thrust capability. The modified propulsion systems were not available for the first test flight, thus the test had to be conducted with an existing Shuttle 4 segment reusable solid rocket motor (RSRM) and an inert Upper Stage. The test flight's primary objective was to demonstrate controllability of an Ares I vehicle during first stage boost and the ability to perform a successful separation. In order to demonstrate controllability, the Ares I-X ascent control algorithms had to maintain stable flight throughout a flight environment equivalent to Ares I. The goal of the test flight reference trajectory development was to design a boost trajectory using the existing RSRM that results in a flight environment equivalent to Ares I. A trajectory similarity metric was defined as the integrated difference between the Ares I and Ares I-X Mach versus dynamic pressure relationships. Optimization analyses were performed that minimized the metric by adjusting the inert upper stage weight and the ascent steering profile. The sensitivity of the optimal upper stage weight and steering profile to launch month was also investigated. A response surface approach was used to verify the optimization results. The analyses successfully defined monthly ascent trajectories that matched the Ares I reference trajectory dynamic pressure versus Mach number relationship to within 10% through Mach 3.5. The upper stage weight required to achieve the match was found to be feasible and varied less than 5% throughout the year. The paper will discuss the flight test requirements, provide Ares I-X vehicle background, discuss the optimization analyses used to meet the requirements, present analysis results, and compare the reference trajectory to the reconstructed flight trajectory.

Starr, Brett R.↗

Sensitivity Studies for Assimilated Ozone Profiles

An ozone data assimilation system at the NASA/Goddard Data Assimilation Office (DAO) produces three-dimensional global ozone fields. They are obtained by assimilating ozone retrieved from the Solar Backscatter UltraViolet/2 (SBUV/2) instrument and the Earth Probe Total Ozone Mapping Spectrometer (EP TOMS) measurements into an off-line parameterized chemistry and transport model. In this talk we focus on the quality of lower stratospheric assimilated ozone profiles. Ozone in the lower stratosphere plays a key role in the forcing of climate. A biased ozone field in this region will adversely impact calculations of the stratosphere-troposphere exchange and, when used as a first guess in retrievals, the values determined from satellite observations. The SBUV/2 ozone data have a coarse vertical resolution with increased uncertainty below the ozone maximum, and TOMS provides only total ozone columns. Thus, the assimilated ozone profiles in the lower stratosphere are only weakly constrained by the incoming SBUV and TOMS data. Consequently, the assimilated ozone distribution should be sensitive to changes in inputs to the statistical analysis scheme. We investigate the sensitivity of assimilated ozone profiles to changes in a variety of system inputs: TOMS and SBUV/2 data selection, forecast and observations error covariance models, inclusion or omission of a parameterized chemistry model, and different versions of DAO assimilated wind fields used to drive the transport model. Comparisons of assimilated ozone fields with independent observations, primarily ozone sondes, are used to determine the impact of each of these changes.

Stajner, Ivanka↗

A model of CO-CH4 global transport/chemistry. II - Preliminary calculation by 1 dimensional model

Calculations of the one-dimensional CO-CH4 transport/chemistry model were performed to investigate the sensitivity of the OH vertical profile to various factors. The boundary conditions at the earth's surface and the tropopause are discussed. The results show that the liquid-phase or soil-phase resistance dominates the mass transfer of both CO and CH4 between the atmosphere and the earth's surface. At the tropopause, the CO and CH4 fluxes are set approximately equal to the value at the previous time step in the numerical calculation. Photolysis rate coefficients that increase with altitude modified the OH vertical profile so that the maximum value was at midtroposphere altitudes. Increasing the CO concentration caused a decrease of the OH concentration, and the OH profile was very sensitive to the NO(x) profiles. The calculated OH profiles are compared with those from other investigations and also with some available measurements. Although the available measurements of the OH profiles are limited, the calculated OH profiles agree fairly well with them.

Kitada, T.↗

An FPGA-based hardware accelerator supporting sensitive sequence homology filtering with profile hidden Markov models

Abstract Background Sequence alignment lies at the heart of genome sequence annotation. While the BLAST suite of alignment tools has long held an important role in alignment-based sequence database search, greater sensitivity is achieved through the use of profile hidden Markov models (pHMMs). Here, we describe an FPGA hardware accelerator, called HAVAC, that targets a key bottleneck step (SSV) in the analysis pipeline of the popular pHMM alignment tool, HMMER. Results The HAVAC kernel calculates the SSV matrix at 1739 GCUPS on a $$\sim$$ ∼ $3000 Xilinx Alveo U50 FPGA accelerator card, $$\sim$$ ∼ 227× faster than the optimized SSV implementation in nhmmer . Accounting for PCI-e data transfer data processing, HAVAC is 65× faster than nhmmer’s SSV with one thread and 35× faster than nhmmer with four threads, and uses $$\sim$$ ∼ 31% the energy of a traditional high end Intel CPU. Conclusions HAVAC demonstrates the potential offered by FPGA hardware accelerators to produce dramatic speed gains in sequence annotation and related bioinformatics applications. Because these computations are performed on a co-processor, the host CPU remains free to simultaneously compute other aspects of the analysis pipeline.

59 BASIC BIOLOGICAL SCIENCES↗

Community-level physiological profiling performed with an oxygen-sensitive fluorophore in a microtiter plate

Community-level physiological profiling based upon fluorometric detection of oxygen consumption was performed on hydroponic rhizosphere and salt marsh litter samples by using substrate levels as low as 50 ppm with incubation times between 5 and 24 h. The rate and extent of response were increased in samples acclimated to specific substrates and were reduced by limiting nitrogen availability in the wells.

NASA Discipline Life Support Systems↗

Sensitivity analysis of the Space Shuttle to ascent wind profiles

This paper presents a parametric sensitivity analysis of the Space Shuttle Ascent flight to the wind profile. Engineering systems parameters are obtained by flight simulations using wind profile models and samples of detailed (Jimsphere) wind profile measurements. The wind models used are the synthetic vector wind model, with and without the design gust, and a model of the vector wind change with respect to time. From these comparison analyses an insight is gained on the contribution of winds to ascent subsystems flight parameters.

Smith, O. E.↗

Topological reaction rate measurements related to scoffing

A ball-on-plate (both consisting of hardened M-50 steel) sliding elastohydrodynamic contact was run with trimethylolpropane triheptanoate (TMPTH) with and without tricresyl phosphate (TCP). The contact area of the plate was optically profiled with a phase-locked interference microscope (PLIM) both before and after exposure to alcoholic hydrochloric acid. As scuffing was approached, the profile within the contact region changed more rapidly after the acid treatment; after scuffing, it assumed a constant high value. A metallurgical phase found in the scuff mark was apparently responsible for the high reactivity. The microscopic profile changes (sensitivity, + or - 3 nm (+ or - A) in depth) involved primarily the small asperities (radius, 3 microns); the larger ones were unaffected. Soaking the steel in TCP smoothed the fine structure of the surface profile but increased its reactivity toward alcoholic hydrochloric acid before sliding was started. Thus it would appear that PLIM examination could be used for screening potentially scuff-resistant materials.

Lauer, J. L.↗

Topological reaction rate measurements related to scuffing

A ball-on-plate (both consisting of hardened M-50 steel) sliding elastohydrodynamic contact was run with trimethylolpropane triheptanoate (TMPTH) with and without tricresyl phosphate (TCP). The contact area of the plate was optically profiled with a phase-locked interference microscope (PLIM) both before and after exposure to alcoholic hydrochloric acid. As scuffing was approached, the profile within the contact region changed more rapidly after the acid treatment; after scuffing, it assumed a constant high value. A metallurgical phase found in the scuff mark was apparently responsible for the high reactivity. The microscopic profile changes (sensitivity, + or - 3 nm (+ or - A) in depth) involved primarily the small asperities (radius, 3 microns); the larger ones were unaffected. Soaking the steel in TCP smoothed the fine structure of the surface profile but increased its reactivity toward alcoholic hydrochloric acid before sliding was started. Thus it would appear that PLIM examination could be used for screening potentially scuff-resistant materials.

Lauer, J. L.↗

Processing of Icy Mantles in Protostellar Envelopes

The 4.5-4.8 micron spectral region provides two potential diagnostics of radiative or thermal processing of interstellar ices in the environs of embedded stars in molecular clouds. A broad absorption feature centered at 4.62 micron is seen in the spectra of several young stellar objects (YSO's) and attributed to C-N triple bonds in a nitrile or isonitrile. As CN-bearing solids in the laboratory are produced by energetic radiative processing of ices containing nitrogen, detection of this feature in YSO's is taken as evidence for (1) the presence of nitrogen in the unprocessed cloud ices, and (2) evolution of the ice in the vicinity of the embedded source. The adjacent feature at 4.67 micron, identified with solid CO, provides not only quantitative information on CO itself but also indirect evidence for the presence of other species; its position and profile are sensitive to the molecular environment of the CO molecules in the ice mantle, and may be used to constrain both the composition and thermal/radiative history of the ice. One important example is the possibility to detect CO2, which is produced easily in the laboratory by UV irradiation of CO-rich or CH3OH-rich ices. CO embedded in a CO2 matrix gives a characteristic spectral signature distinct from other CO-bearing mixtures investigated to date. We have obtained CO absorption profiles of three young stellar objects in order to investigate their ice mantle composition.

Chiar, J. E.↗