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DOE OSTI2024

SAM-I-Am: Semantic boosting for zero-shot atomic-scale electron micrograph segmentation

Image segmentation is a critical enabler for tasks ranging from medical diagnostics to autonomous driving. However, the correct segmentation semantics — where are boundaries located? what segments are logically similar? — change depending on the domain, such that state-of-the-art foundation models can generate meaningless and incorrect results. Moreover, in certain domains, fine-tuning and retraining techniques are infeasible: obtaining labels is costly and time-consuming; domain images (micrographs) can be exponentially diverse; and data sharing (for third-party retraining) is restricted. To enable rapid adaptation of the best segmentation technology, we propose the concept of semantic boosting: given a zero-shot foundation model, guide its segmentation and adjust results to match domain expectations. Here, we apply semantic boosting to the Segment Anything Model (SAM) to obtain microstructure segmentation for transmission electron microscopy. Our booster, SAM-I-Am, serves as a post-processing engine that extracts geometric and textural features of various intermediate masks to perform mask removal and mask merging operations. We demonstrate a zero-shot performance increase of (absolute) +21.35%, +12.6%, +5.27% in mean IoU, and a -9.91%, -18.42%, -4.06% drop in mean false positive masks across images of three difficulty classes over vanilla SAM (ViT-L).

36 MATERIALS SCIENCE↗

DOE OSTI2024

Hydrogen–Deuterium Exchange Mass Spectrometry Identifies Local and Long-Distance Interactions within the Multicomponent Radical SAM Enzyme, PqqE

Interactions among proteins and peptides are essential for many biological activities including the tailoring of peptide substrates to produce natural products. The first step in the production of the bacterial redox cofactor pyrroloquinoline quinone (PQQ) from its peptide precursor is catalyzed by a radical SAM (rSAM) enzyme, PqqE. We describe the use of hydrogen–deuterium exchange mass spectrometry (HDX-MS) to characterize the structure and conformational dynamics in the protein–protein and protein–peptide complexes necessary for PqqE function. HDX-MS-identified hotspots can be discerned in binary and ternary complex structures composed of the peptide PqqA, the peptide-binding chaperone PqqD, and PqqE. Structural conclusions are supported by size-exclusion chromatography coupled to small-angle X-ray scattering (SEC-SAXS). HDX-MS further identifies reciprocal changes upon the binding of substrate peptide and S-adenosylmethionine (SAM) to the PqqE/PqqD complex: long-range conformational alterations have been detected upon the formation of a quaternary complex composed of PqqA/PqqD/PqqE and SAM, spanning nearly 40 Å, from the PqqA binding site in PqqD to the PqqE active site Fe 4 S 4 . Interactions among the various regions are concluded to arise from both direct contact and distal communication. The described experimental approach can be readily applied to the investigation of protein conformational communication among a large family of peptide-modifying rSAM enzymes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2024

Implementation of a Drift Flux Model into SAM with Development of a Verification and Validation Test Suite for Modeling of Noncondensable Gas Mixtures

The advanced thermal-hydraulic system code, System Analysis Module (SAM), was originally developed for the modeling of single-phase flow in advanced reactors. It has since been expanded to include a four-equation drift flux model for the modeling of two-phase flows containing a noncondensable gas. The model was expanded to support the modeling of molten salt reactor (MSR) designs in which the fuel is directly dissolved in the circulating coolant. These designs have shown that circulating gas bubbles can play an important role in the management of fission products and the operational behavior of the reactor. A drift flux model was implemented to more accurately capture the localized behavior of the void in the core and its impact on the mass transfer of fission products. A thorough assessment of the new model was performed by developing a verification and validation test suite. Verification problems were designed to test all major terms in the new governing equations. The new model converged to the correct solution at the expected order of accuracy for all verification cases. The validation cases included a wide range of flow and void conditions in different pipe geometries. Although higher void experiments show a slight underprediction of void by the drift flux model, experiments that aim to reproduce Molten Salt Reactor Experiment (MSRE) experimental conditions show good agreement with the model. The gas transport model was activated for a SAM model of the MSRE to demonstrate that it can be used in a more complex model. Finally, this gas transport model will be used along with an interfacial area transport equation being implemented in SAM for the prediction of mass transport behavior in MSR conditions.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

DOE OSTI2020

FY20 SAM Code Developments and Validations for Transient Safety Analysis of Advanced non-LWRs

The System Analysis Module (SAM) is under development at Argonne National Laboratory as a modern system-level modeling and simulation tool for advanced non-light water reactor safety analyses. It utilizes the object-oriented application framework MOOSE to leverage the modern software environment and advanced numerical methods. The capabilities of SAM are being extended to enable the transient modeling, analysis, and design of various advanced nuclear reactor systems. This report summarizes major progress in SAM code development, capability enhancements, demonstration, and validation to support transient safety analysis of advanced non-LWRs. Rapid developments continued in fiscal year 2020 (FY20) to support various needs of the advanced reactor community, especially the NRC and industry on the licensing safety analysis of advanced reactor designs. Significant code changes were made to provide various capability enhancements, bug fixes, and user friendliness improvements. Major code updates are summarized in Section 1, while four important enhancements are detailed in Sections 2-5, including a multi-dimension flow model; reactivity feedback and decay heat models; control and trip system modeling, and additional fluid and solid thermophysical property models. Code validation activities in FY20 include using test data from the Fast Flux Test Facility (FFTF), the High Temperature Test Facility (HTTF), and several separate effects test facilities for pebble-bed modeling.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

DOE OSTI2021

SAM Code Enhancement, Validation, and Reference Model Development for Fluoride-salt-cooled High-temperature Reactors

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2021

Improvements of SAM Heat Transfer Models for Molten Salt-Cooled Pebble Bed Reactors

To support the development and utilization of the SAM code for molten salt-cooled pebble bed reactor safety analyses and licensing, selected improvements were made to the one-dimensional system-level heat transfer modeling in SAM with the goal of better capturing heat transfer phenomena specific to these designs. In consideration of molten salt as a coolant, new models were introduced to capture the enhanced radiative heat transfer that must be considered at the higher working temperatures. Radiative heat transfer is handled not only between two structural surfaces, but also in combination between the surfaces and the molten salt fluid, which has a higher opacity and absorption of radiative heat as compared to water. Several examples of analytical verification of the new radiative heat transfer methods are included in this report. Additionally, convective heat transfer correlations were selected from literature and included in SAM to account for the enhanced heat transfer expected in pebble bed geometry flows. These correlations are verified and demonstrated in the present work with a reference FHR example.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

DOE OSTI2021

SAM Developments for MSR Modeling (FY21)

An advanced system analysis tool, SAM, is under development for advanced non-LWR reactor safety analysis, including molten salt reactors (MSR). To support the development and utilization of the SAM code for MSR safety analysis and licensing, continuous efforts have been devoted to enhancing code capabilities and updating reference models for the MSRs. This report documents the FY21 progress in SAM code development, capability enhancements, and reference model development to support transient safety analysis of MSRs, including code enhancements in reactor kinetics and reactivity feedback modeling for liquid fuel reactors, updates of the Molten Salt Reactor Experiment (MSRE) primary system model, developments and updates of the molten salt fast reactor (MSFR) model based on EVOL design, and implementation of a drift flux model for modeling gas transport in MSR systems.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

DOE OSTI2023

Recent Code Developments/Improvements to SAM Multi-dimensional Flow Model

The System Analysis Module (SAM) is under development at Argonne National Laboratory as a modern system-level modeling and simulation tool for advanced non-light water reactor safety analyses. In addition to its conventional one-dimensional flow network module, the multi-dimensional flow model of SAM offers significant benefits to its end-users, including the U.S. NRC, who uses it to develop reference models for advanced reactor concepts. This report provides a summary of the recent progress achieved under DOE-NE’s Nuclear Energy Advanced Modeling and Simulation program in the continuous code development and improvements of the SAM code, specifically its multi-dimensional flow model. The improvements include enhancements to the physical model, code usability, addressing user feedback, and compliance with the SQA program standards that aim to enhance and maintain the quality of the software.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2023

SAM Assessment Report

The System Analysis Module (SAM) is a modern system analysis tool being developed at Argonne National Laboratory (Argonne) for advanced non-LWR safety analysis. A series of assessment cases are modeled using SAM and, when applicable, compared against analytical solutions or engineering judgement. This report documents the assessment of SAM for eleven different categories. Each category contains a series of tests that examine different boundary conditions, system configurations, or modeling options. Although relatively simple, these tests cover the basic equation models, basic component models, and basic system level processes and phenomena that may be utilized during advanced reactor safety analyses.

1-D fluid flow↗

DOE OSTI2023

Neutron Dosimetry for the SAM-2 Irradiation in ATR

PNNL project 79550 provides for the analysis of neutron fluence monitors irradiated in the Advanced Test Reactor (ATR) at Idaho National Laboratory in accordance with MPO 00269673 and Statement of Work No. 19704, Rev. 0, PNNL Analysis of NSUF Flux Capsules. This report is for the SAM-2 irradiation which was conducted in position B8 of the ATR. Other experiments included in the statement of work for this project will be reported separately. The neutron fluence monitors were prepared by PNNL and sent to INL for loading into the SAM-2 assembly prior to irradiation. The SAM-2 experiment has 8 capsules labelled A through H designed for different exposures in successive irradiation cycles. This report is for the first three capsules, A, B and C, co-irradiated for 1 cycle. The remaining capsules and fluence monitors will be removed and analyzed after additional irradiation. Following irradiation, the fluence monitors from capsules A, B, and C were returned to PNNL for analysis. The neutron dosimetry capsules were opened, the flux wires were removed for gamma or x-ray analysis, and the measured activities were used to determine the activation rates for various activation products. Following suitable corrections, the measured activation rates were used to adjust calculated neutron spectra at each fluence monitor location. The adjusted neutron spectra were then used to determine displacement per atom (dpa) and gas production for irradiated materials.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DOE OSTI2025

SAM Enhancements for Air-Ingress Event Modeling in HTGRs

The SAM code is under development and supported by DOE-NE’s Nuclear Energy Advanced Modeling and Simulation program as a modern system-level modeling and simulation tool for advanced non-light water reactor safety analyses. These advanced reactor concepts incorporate novel and improved approaches to achieve safety and economic feasibility. This report summarizes recent efforts and progress in addressing the code capability gaps in SAM for the modeling of the air-ingress phenomenon in High-Temperature Gas-Cooled Reactors (HTGRs). The capability enhancements implemented to the code include: a multi-component flow model to capture the air-helium mixture during air ingress, a 0-D graphite oxidation model to capture the reaction of graphite with oxygen in the air, and an isentropic critical flow model to more accurately predict the de-pressurization of the reactor system due to a small break in the primary loop. Verification cases and demonstrations are provided to showcase these capabilities in SAM. Existing gaps in the code’s capability are also identified.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2023

Release on the Virtual Test Bed of a Molten Salt Reactor Experiment SAM-Pronghorn Coupled Model using the Domain Overlapping Approach

The nuclear industry is taking leaps in innovations with companies seeking a sustainable energy future through advanced nuclear reactors. The Department of Energy (DOE)’s Nuclear Energy Advanced Modeling and Simulation (NEAMS) program seeks to substantiate and bolster the deployment of advanced reactors through flexible multifidelity, multiphysics simulations of advanced nuclear reactors. Applications like SAM for one-dimensional systems thermalhydraulics, and Pronghorn for multidimensional coarse mesh thermal-hydraulics, are geared to support innovations in industry by facilitating design, optimization, and licensing of advanced nuclear reactors. Coupling systems thermal-hydraulics and computational fluid dynamics codes can be difficult as the pressure coupling converges slowly; however, it is important to obtain the desired accuracy in each part of the primary loop. The authors of this model created an Overlapping-Domain Coupling (ODC) approach to coupling SAM and Pronghorn. Leveraging this coupling technique, a Molten Salt Reactor Experiment (MSRE) model was developed and released to the NEAMS/National Reactor Innovation Center (NRIC) Virtual Test Bed (VTB). The MSRE was chosen to be modeled because of the wealth of experimental data available and because of the strong physics coupling between the core and primary circuit. This paper contextualizes the history of the MSRE, describes the thermal hydraulics models used, and detail the implementation of multidimensional thermal-hydraulics and system codes based on the ODC method for the MSRE model. Finally, this paper presents how other modelers could apply the SAM Pronghorn ODC for other advanced reactor models.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2023

Benchmarking FFTF LOFWOS Test# 13 using SAM code: Baseline model development and uncertainty quantification

The development and deployment of advanced reactors, such as the sodium-cooled fast reactor (SFR), relies on sophisticated modeling tools to ensure the safety of the design under various transients. The predictive capability of these advanced modeling tools requires validation to garner trust in supporting the licensing of the advanced reactors. For this reason, the International Atomic Energy Agency (IAEA) initiated a coordinated research project (CRP) in 2018 for the analysis of the Fast Flux Test Facility (FFTF) Loss of Flow Without Scram (LOFWOS) Test #13.In this study, we present and discuss the benchmarking efforts of the modern system code SAM on the FFTF LOFWOS Test #13. Further, the SAM baseline model was developed according to the benchmark specification, which included a detailed core model with reactivity feedback. Generally, good agreement was observed between the baseline results and benchmark measurements; however, discrepancies persisted, particularly in predicted fuel assembly coolant outlet temperatures. Utilizing the baseline model, uncertainty quantification (UQ) and sensitivity analysis (SA) were conducted with the assistance of various statistical learning and machine learning methods, including kernel density estimation, Gaussian processes, and Sobol indices. Following the baseline model prediction and UQ and SA results, we discuss the reasons for the simulation discrepancies and propose further improvements to the model. This benchmarking effort adheres to the best-estimate plus uncertainty approach and can serve as a valuable example for supporting risk-informed licensing of advanced reactors.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2024

Verification and Demonstration of One-Dimensional Freezing Model in SAM for Salt-Cooled Reactor Analysis Applications

This work presented the development and implementation of the one-dimensional freezing model in system analysis code, SAM, as well as code verification, and code demonstration during a postulated overcooling transient, for fluoride salt-cooled high-temperature reactor (FHR) system and safety analysis applications. The paper at first summarized the freezing model, finite element numerical method, and special numerical treatment for handling phase appearance/disappearance. Analytical solutions were derived for two cases (with and without solid walls) for code verifications purpose. As expected, numerical results predicted by the SAM code agreed very well with the analytical solution. A code demonstration was then performed on a postulated protected overcooling event transient of a generic reference PB-FHR design. The code was found to successfully predict salt freezing during such a postulated event. However, due to lack of salt freezing testing data, code validation has not been performed in this work, which will be pursued in later studies when such data becomes available.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2022

Representative-cell-based Modeling of HTTF in SAM

Although the current nuclear power market is primarily occupied by the light water reactors (LWRs), the TRISO-fueled helium-cooled graphite-moderated high temperature gas reactors (HTGRs) are drawing growing attention as the nuclear power industry marches towards more advanced systems. Compared to that of conventional LWRs, the thermal hydraulics of HTGR cores show extra complexity from their multi-scale heat transfer mechanisms with varying importance during different operation modes or transient stages. The modeling of HTGR cores for the system analysis purpose therefore faces the challenge of reaching reasonable fidelity and accuracy while maintaining sufficient simplicity. Previous development and validation efforts have demonstrated that a “2-D ring model” with reasonable performance can be implemented in the System Analysis Module (SAM) for prismatic HTGR cores. In the current project, an alternative modeling methodology based on “representative cells” is proposed for the typical prismatic core of HTGRs. Different from the previous ring model approach, the proposed methodology first separately models and then combines the small- and large-scale thermal conductions, by connecting representative local heat transfer units (cells) with effective core- wise thermal resistance. A modeling practice for an integral high-temperature test facility (HTTF) elaborates the modeling details. Steady-state validation of the resultant candidate model is performed against a higher-resolution benchmark from a 3D-1D coupled simulation, which shows satisfactory prediction with reasonably captured global parameters and well-represented temperature fields. A postulated pressurized conduction cooldown (PCC) is also simulated and analyzed, demonstrating the model’s capability of transient prediction with physically captured phenomena resolved in both small and large temporal and spatial scales. In general, the current work achieves a preliminary success in proposing a methodology using representative cells to model prismatic HTGR cores in SAM. Future efforts are envisioned with more validation activities and with potential modeling improvements to eventually achieve the high confidence on a high-fidelity robust modeling methodology with reasonable accuracy.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

DOE OSTI2025

System Advisor Model (SAM) Improvements for Emerging Solar Thermal Applications

The System Advisor Model (SAM) is an open-source tool developed by NREL to simulate the techno-economic performance of technologies like photovoltaics, solar thermal, wind, and geothermal. NREL has recently completed, active, and planned projects to improve the solar thermal models in SAM and its underlying code base to represent emerging component technologies, systems, and applications. This poster describes new capabilities in the SolarPILOT optical modeling tool, supercritical carbon dioxide (sCO2) power cycles, and solar industrial process heat.

14 SOLAR ENERGY↗

DOE OSTI2020

Batteries in SAM 2020.2.29: Behind-the-Meter Systems

Provide an overview of behind the meter dispatch methods in the SAM 2020.2.29 software for analysis of residential, commercial, and generic battery systems. Discuss the details of SAM's automatic peak shaving and manual energy arbitrage dispatch options.

41 EE - Solar Energy Technologies Office (EE-4S)↗

DOE OSTI2023

Linkages Between NREL's dGen, REopt, and SAM Models

This webinar describes linkages between NREL's dGen, SAM, and REopt tools that were developed as a part of the RiDER project, including specifying utility rates in the SAM GUI and using them in dGen adoption analysis, and using REopt to determine optimal system sizes for dGen agents.

dGen↗