Development of Plant ReLoad Optimization (PRLO) Platform
This is a progress update report for RISA (Risk-Informed Systems Analysis) pathway of LWRS (Light water reactor sustainability).
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This is a progress update report for RISA (Risk-Informed Systems Analysis) pathway of LWRS (Light water reactor sustainability).
ABSTRACT We present a method of combining cluster abundances and large-scale two-point correlations, namely galaxy clustering, galaxy–cluster cross-correlations, cluster autocorrelations, and cluster lensing. This data vector yields comparable cosmological constraints to traditional analyses that rely on small-scale cluster lensing for mass calibration. We use cosmological survey simulations designed to resemble the Dark Energy Survey Year 1 (DES-Y1) data to validate the analytical covariance matrix and the parameter inferences. The posterior distribution from the analysis of simulations is statistically consistent with the absence of systematic biases detectable at the precision of the DES-Y1 experiment. We compare the χ2 values in simulations to their expectation and find no significant difference. The robustness of our results against a variety of systematic effects is verified using a simulated likelihood analysis of DES-Y1-like data vectors. This work presents the first-ever end-to-end validation of a cluster abundance cosmological analysis on galaxy catalogue level simulations.
Existing models for the dependence of the halo mass function on cosmological parameters will become a limiting source of systematic uncertainty for cluster cosmology in the near future. We present a halo mass function emulator and demonstrate improved accuracy relative to state-of-the-art analytic models. In this work, mass is defined using an overdensity criteria of 200 relative to the mean background density. Our emulator is constructed from the AEMULUS simulations, a suite of 40 N-body simulations with snapshots from z = 3 to z = 0. These simulations cover the flat wCDM parameter space allowed by recent cosmic microwave background, baryon acoustic oscillation and SNe Ia results, varying the parameters w, Omega(m), Omega(b), sigma(8), N-eff, n(s), and H-0. We validate our emulator using five realizations of seven different cosmologies, for a total of 35 test simulations. These test simulations were not used in constructing the emulator, and were run with fully independent initial conditions. We use our test simulations to characterize the modeling uncertainty of the emulator, and introduce a novel way of marginalizing over the associated systematic uncertainty. We confirm nonuniversality in our halo mass function emulator as a function of both cosmological parameters and redshift. Our emulator achieves better than 1% precision over much of the relevant parameter space, and we demonstrate that the systematic uncertainty in our emulator will remain a negligible source of error for cluster abundance studies through at least the LSST Year 1 data set.
Using the N-body simulations of the Aemulus Project, we construct an emulator for the nonlinear clustering of galaxies in real and redshift space. We construct our model of galaxy bias using the halo occupation framework, accounting for possible velocity bias. The model includes 15 parameters, including both cosmological and galaxy bias parameters. We demonstrate that our emulator achieves ~1% precision at the scales of interest, 0.1 h -1 Mpc < r < 10 h -1 Mpc, and recovers the true cosmology when tested against independent simulations. Our primary parameters of interest are related to the growth rate of structure, f, and its degenerate combination, fσ 8 . Using this emulator, we show that the constraining power on these parameters monotonically increases as smaller scales are included in the analysis, all the way down to 0.1 h -1 Mpc. For a BOSS-like survey, the constraints on fσ 8 from r < 30 h -1 Mpc scales alone are nearly a factor of two tighter than those from the fiducial BOSS analysis of redshift-space clustering using perturbation theory at larger scales. The combination of real- and redshift-space clustering allows us to break the degeneracy between f and σ 8, yielding an 11% constraint on f alone for a BOSS-like analysis. The current Aemulus simulations limit this model to surveys of massive galaxies. Future simulations will allow this framework to be extended to all galaxy target types, including emission-line galaxies.
The rapidly growing statistical precision of galaxy surveys has led to a need for ever more precise predictions of the observables used to constrain cosmological and galaxy formation models. The primary avenue through which such predictions will be obtained is suites of numerical simulations. These simulations must span the relevant model parameter spaces, be large enough to obtain the precision demanded by upcoming data, and be thoroughly validated in order to ensure accuracy. In this paper, we present one such suite of simulations, forming the basis for the AEMULUS Project, a collaboration devoted to precision emulation of galaxy survey observables. We have run a set of 75 (1.05 h(-1) Gpc)(3) simulations with mass resolution and force softening of 3.51 x 10(10) (Omega(m)/0.3) h(-1) M-circle dot and 20 h(-1) kpc, respectively, in 47 different wCDM cosmologies spanning the range of parameter space allowed by the combination of recent cosmic microwave background, baryon acoustic oscillation, and Type Ia supernova results. We present convergence tests of several observables including spherical overdensity halo mass functions, galaxy projected correlation functions, galaxy clustering in redshift space, and matter and halo correlation functions and power spectra. We show that these statistics are converged to 1% (2%) or to the sample variance of the statistic, whichever is larger, for halos with more than 500 (200) particles, respectively, and scales of r > 200 h(-1) kpc. in real space or k similar to 3 h Mpc(-1). in harmonic space for z <= 1. We find that the dominant source of uncertainty comes from varying the particle loading of the simulations. This leads to large systematic errors for statistics using halos with fewer than 200 particles and scales smaller than k similar to 4 h Mpc(-1). We provide the halo catalogs and snapshots detailed in this work to the community at. https://AemulusProject.github.io.
Highlights: • Crystal structure of a circularized variant of G-CSF was determined. • It is the first-ever crystal structure of a backbone-circularized protein. • Electron density proved the formation of a peptide bond connecting the ends. • Terminal helix was deformed to relax the stress attributed to artificial connection. Backbone circularization is a powerful approach for enhancing the structural stability of polypeptides. Herein, we present the crystal structure of the circularized variant of the granulocyte colony-stimulating factor (G-CSF) in which the terminal helical region was circularized using a short, two-amino acid connector. The structure revealed that the N- and C-termini were indeed connected by a peptide bond. The local structure of the C-terminal region transited from an α helix to 3{sub 10} helix with a bend close to the N-terminal region, indicating that the structural change offset the insufficient length of the connector. This is the first-ever report of a crystal structure of the backbone of a circularized protein. It will facilitate the development of backbone circularization methodology.
Separate-effects boiling experiments have recently been conducted in the Transient Reactor Test Facility at Idaho National Laboratory to investigate transient heating and irradiation effects on cladding-to-coolant heat transfer. Specifically, transient critical heat flux (CHF) remains an important area of research, and better understanding of this phenomenon has potential for improving predictive models related to operational and safety limits. Consequently, this knowledge is expected to improve efficiency of light-water reactor operations. A novel borated nuclear-heated rodlet (BNHR) was designed to enable observation of transient cladding-to-coolant heat transfer phenomena. The final BNHR design takes a surrogate approach, wherein nuclear heating is induced by 10 B(n, α) reactions rather than derived from fissions in a fueled specimen. The structure of the BNHR consists of a hollowed out borated (B nat ~ 2.05 wt %) stainless steel tube with an hourglass-shaped outer surface, capped at both ends with non-borated stainless steel. This geometry allows for inner-rodlet instrumentation and generation of the highest nuclear heating rates near the center of the rodlet to ensure onset of boiling near instrumentation for real-time observation. A novel approach to measuring the nuclear energy deposition rate in the BNHR separate and apart from the influence of the coolant, termed the n-a thermometer, is also detailed in this paper. This device has demonstrated excellent repeatability, and measurements indicate predictive modeling results for energy deposition in the BNHR rod agree within a 10% margin of the experiment measurements. In conclusion, these results give confidence that the BNHR design has successfully met experiment objectives.
Astrophysics Telescope for Large Area Spectroscopy Probe is a concept for a National Aeronautics and Space Administration probe-class space mission that will achieve ground-breaking science in the fields of galaxy evolution, cosmology, Milky Way, and the Solar System. It is the follow-up space mission to Wide Field Infrared Survey Telescope (WFIRST), boosting its scientific return by obtaining deep 1–4 μm slit spectroscopy for ~70% of all galaxies imaged by the ~2 000 deg 2 WFIRST High Latitude Survey at z > 0.5. Astrophysics Telescope for Large Area Spectroscopy will measure accurate and precise redshifts for ~200 M galaxies out to z < 7, and deliver spectra that enable a wide range of diagnostic studies of the physical properties of galaxies over most of cosmic history. Astrophysics Telescope for Large Area Spectroscopy Probe and WFIRST together will produce a 3D map of the Universe over 2 000 deg 2 , the definitive data sets for studying galaxy evolution, probing dark matter, dark energy and modifications of General Relativity, and quantifying the 3D structure and stellar content of the Milky Way. Astrophysics Telescope for Large Area Spectroscopy Probe science spans four broad categories: (1) Revolutionising galaxy evolution studies by tracing the relation between galaxies and dark matter from galaxy groups to cosmic voids and filaments, from the epoch of reionisation through the peak era of galaxy assembly; (2) Opening a new window into the dark Universe by weighing the dark matter filaments using 3D weak lensing with spectroscopic redshifts, and obtaining definitive measurements of dark energy and modification of General Relativity using galaxy clustering; (3) Probing the Milky Way’s dust-enshrouded regions, reaching the far side of our Galaxy; and (4) Exploring the formation history of the outer Solar System by characterising Kuiper Belt Objects. Astrophysics Telescope for Large Area Spectroscopy Probe is a 1.5 m telescope with a field of view of 0.4 deg 2 , and uses digital micro-mirror devices as slit selectors. It has a spectroscopic resolution of R = 1 000, and a wavelength range of 1–4 μm. The lack of slit spectroscopy from space over a wide field of view is the obvious gap in current and planned future space missions; Astrophysics Telescope for Large Area Spectroscopy fills this big gap with an unprecedented spectroscopic capability based on digital micro-mirror devices (with an estimated spectroscopic multiplex factor greater than 5 000). Astrophysics Telescope for Large Area Spectroscopy is designed to fit within the National Aeronautics and Space Administration probe-class space mission cost envelope; it has a single instrument, a telescope aperture that allows for a lighter launch vehicle, and mature technology (we have identified a path for digital micro-mirror devices to reach Technology Readiness Level 6 within 2 yr). In conclusion, Astrophysics Telescope for Large Area Spectroscopy Probe will lead to transformative science over the entire range of astrophysics: from galaxy evolution to the dark Universe, from Solar System objects to the dusty regions of the Milky Way
This study demonstrated that covalently localized zwitterionic moieties in zwitterionic polypeptides (ZIPs) effectively disrupt hydrogen bonds in cellulosic substrates, including filter paper and plant cell wall materials, without significant cytotoxicity. ZIPs with varying densities of zwitterionic side chains were synthesized via the postpolymerization modification of histidinecontaining oligopeptides. The newly developed ZIPs predominantly comprised repeating units with zwitterionically converted side chains. Such ZIPs can cleave multiple hydrogen bonds by anchoring the zwitterionic structure at specific sites, thereby partially dissociating the polysaccharide chains in the cell wall. They are especially effective in dissolving amorphous cellulose, even at low concentrations in aqueous solutions. Importantly, this effect was achieved with minimal cellular toxicity, harnessing the advantages of ionic liquid-like properties while mitigating their high-toxicity limitations. This biofriendly approach to cell wall denaturation highlights a novel method for controlling hydrogen bond networks in polysaccharides and cell walls. These findings indicate a new approach for reducing biomass recalcitrance and developing next-generation biobased materials and fuels derived from plant cell walls.
Not provided.
Time courses of compound concentrations in plasma are used in chemical safety analysis to evaluate the relationship between external administered doses and internal tissue exposures. This type of experimental data is rarely available for the thousands of non-pharmaceutical chemicals to which people may potentially be unknowingly exposed but is necessary to properly assess the risk of such exposures. In vitro assays and in silico models are often used to craft an understanding of a chemical’s pharmacokinetics; however, the certainty of the quantitative application of these estimates for chemical safety evaluations cannot be determined without in vivo data for external validation. To address this need, we present a public database of chemical time-series concentration data from 567 studies in humans or test animals for 144 environmentally-relevant chemicals and their metabolites (187 analytes total). All major administration routes are incorporated, with concentrations measured in blood/plasma, tissues, and excreta. We also include calculated pharmacokinetic parameters for some studies, and a bibliography of additional source documents to support future extraction of time-series. In addition to pharmacokinetic model calibration and validation, these data may be used for analyses of diferential chemical distribution across chemicals, species, doses, or routes, and for meta-analyses on pharmacokinetic studies.
The engineered supramolecular recognition of coordination complexes achieved by ligand design is shown in the solid state and in solution via X-ray diffraction and paramagnetic H-NMR spectroscopy.
Here we present the Aemulusν simulations: a suite of 150 (1.05 h -1 Gpc) 3 N-body simulations with a mass resolution of 3.51 × 10 10 Ω cb /0.3 h -1 M ⊙ in a wνCDM cosmological parameter space. The simulations have been explicitly designed to span a broad range in σ8 to facilitate investigations of tension between large scale structure and cosmic microwave background cosmological probes. Neutrinos are treated as a second particle species to ensure accuracy to 0.5 eV, the maximum neutrino mass that we have simulated. By employing Zel'dovich control variates, we increase the effective volume of our simulations by factors of 10-10 5 depending on the statistic in question. As a first application of these simulations, we build new hybrid effective field theory and matter power spectrum surrogate models, demonstrating that they achieve ≤ 1% accuracy for k ≤ 1 hMpc -1 and 0 ≤ z ≤ 3, and ≤ 2% accuracy for k ≤ 4 hMpc -1 for the matter power spectrum. We publicly release the trained surrogate models, and estimates of the surrogate model errors in the hope that they will be broadly applicable to a range of cosmological analyses for many years to come.
Precise and accurate predictions of the halo mass function for cluster mass scales in wνCDM cosmologies are crucial for extracting robust and unbiased cosmological information from upcoming galaxy cluster surveys. Here, we present a halo mass function emulator for cluster mass scales (≳ 1013 M ⊙/h) up to redshift z = 2 with comprehensive support for the parameter space of wνCDM cosmologies allowed by current data. Based on the Aemulus ν suite of simulations, the emulator marks a significant improvement in the precision of halo mass function predictions by incorporating both massive neutrinos and non-standard dark energy equation of state models. This allows for accurate modeling of the cosmology dependence in large-scale structure and galaxy cluster studies. We show that the emulator, designed using Gaussian Process Regression, has negligible theoretical uncertainties compared to dominant sources of error in future cluster abundance studies. Our emulator is publicly available (https://github.com/DelonShen/aemulusnu_hmf), providing the community with a crucial tool for upcoming cosmological surveys such as LSST and Euclid.
In this work, we develop and implement two new methods for constraining the scatter in the relationship between galaxies and dark matter haloes. These new techniques are sensitive to the scatter at low halo masses, making them complementary to previous constraints that are dependent on clustering amplitudes or rich galaxy groups, both of which are only sensitive to more massive haloes. In both of our methods, we use a galaxy group finder to locate central galaxies in the Sloan Digital Sky Survey main galaxy sample. Our first technique uses the small-scale cross-correlation of central galaxies with all lower mass galaxies. This quantity is sensitive to the satellite fraction of low-mass galaxies, which is in turn driven by the scatter between haloes and galaxies. The second technique uses the kurtosis of the distribution of line-of-sight velocities between central galaxies and neighbouring galaxies. This quantity is sensitive to the distribution of halo masses that contain the central galaxies at fixed stellar mass. Theoretical models are constructed using peak halo circular velocity, Vpeak, as our property to connect galaxies to haloes, and all comparisons between theory and observation are made after first passing the model through the group-finding algorithm. We parametrize scatter as a lognormal distribution in M* at fixed Vpeak, σ[M*|Vpeak]. The cross-correlation technique yields a constraint of σ[M*|Vpeak] = 0.27 ± 0.05 dex at a mean Vpeak of 168 km s-1, corresponding to a scatter in log M* at fixed Mh of σ[M*|Mh] = 0.38 ± 0.06 dex at $M_\text{h}=10^{11.8}\, \text{M}_\odot$. The kurtosis technique yields σ[M*|Vpeak] = 0.30 ± 0.03 at Vpeak = 209 km s-1, corresponding to σ[M*|Mh] = 0.34 ± 0.04 at $M_\text{h}=10^{12.2}\, \text{M}_\odot$. The values of σ[M*|Mh] are significantly larger than the constraints at higher masses, in agreement with the results of hydrodynamic simulations. This increase is only partly due to the scatter between Vpeak and Mh, and it represents an increase of nearly a factor of 2 relative to the values inferred from clustering and group studies at high masses.
ABSTRACT The concentration parameter is a key characteristic of a dark matter halo that conveniently connects the halo’s present-day structure with its assembly history. Using ‘Dark Sky’, a suite of cosmological N-body simulations, we investigate how halo concentration evolves with time and emerges from the mass assembly history. We also explore the origin of the scatter in the relation between concentration and assembly history. We show that the evolution of halo concentration has two primary modes: (1) smooth increase due to pseudo-evolution; and (2) intense responses to physical merger events. Merger events induce lasting and substantial changes in halo structures, and we observe a universal response in the concentration parameter. We argue that merger events are a major contributor to the uncertainty in halo concentration at fixed halo mass and formation time. In fact, even haloes that are typically classified as having quiescent formation histories experience multiple minor mergers. These minor mergers drive small deviations from pseudo-evolution, which cause fluctuations in the concentration parameters and result in effectively irreducible scatter in the relation between concentration and assembly history. Hence, caution should be taken when using present-day halo concentration parameter as a proxy for the halo assembly history, especially if the recent merger history is unknown.
Cold dark matter haloes consist of a relatively smooth dark matter component as well as a system of bound subhaloes. It is the prevailing practice to include all mass, including mass in subhaloes, in studies of halo density profiles in simulations. However, often in observational studies satellites are treated as having their own distinct dark matter density profiles in addition to the profile of the host. This difference can make comparisons between theoretical and observed results difficult. In this work, we investigate density profiles of the smooth components of host haloes by excluding mass contained within subhaloes. We find that the density profiles of the smooth halo component (without subhaloes) differ substantially from the conventional halo density profile, declining more rapidly at large radii. We also find that concentrations derived from smooth density profiles exhibit less scatter at fixed mass and a weaker mass dependence than standard concentrations. Both smooth and standard halo profiles can be described by a generalized Einasto profile, an Einasto profile with a modified central slope, with smaller residuals than either a Navarro–Frenk–White or Einasto profile. Furthermore, these results hold for both Milky Way-mass and cluster-mass haloes. This new characterization of smooth halo profiles can be useful for many analyses, such as lensing and dark matter annihilation, in which the smooth and clumpy components of a halo should be accounted for separately.
The James Webb Space Telescope (JWST) is expected to observe galaxies at z > 10 that are presently inaccessible. Here, we use a self-consistent empirical model, the universemachine, to generate mock galaxy catalogues and light-cones over the redshift range z = 0-15. These data include realistic galaxy properties (stellar masses, star formation rates, and UV luminosities), galaxy–halo relationships, and galaxy–galaxy clustering. Mock observables are also provided for different model parameters spanning observational uncertainties at z < 10. We predict that Cycle 1 JWST surveys will very likely detect galaxies with M* > 10 7 M⊙ and/or M 1500 < -17 out to at least z ~ 13.5. Number density uncertainties at z > 12 expand dramatically, so efforts to detect z > 12 galaxies will provide the most valuable constraints on galaxy formation models. Additionally, the faint-end slopes of the stellar mass/luminosity functions at a given mass/luminosity threshold steepen as redshift increases. This is because observable galaxies are hosted by haloes in the exponentially falling regime of the halo mass function at high redshifts. Hence, these faint-end slopes are robustly predicted to become shallower below current observable limits (M* < 10 7 M⊙ or M 1500 > -17). For reionization models, extrapolating luminosity functions with a constant faint-end slope from M 1500 = -17 down to M 1500 = -12 gives the most reasonable upper limit for the total UV luminosity and cosmic star formation rate up to z ~ 12. We compare to three other empirical models and one semi-analytic model, showing that the range of predicted observables from our approach encompasses predictions from other techniques. Public catalogues and light-cones for common fields are available online.