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At least 55 records · Page 3

Functional and evolutionary relationships between bacteriorhodopsin and halorhodopsin in the archaebacterium, halobacterium halobium

The archaebacteria occupy a unique place in phylogenetic trees constructed from analyses of sequences from key informational macromolecules, and their study continues to yield interesting ideas on the early evolution and divergence of biological forms. It is now known that the halobacteria among these species contain various retinal-proteins, resembling eukaryotic rhodopsins, but with different functions. Two of these pigments, located in the cytoplasmic membranes of the bacteria, are bacteriorhodopsin (a light-driven proton pump) and halorhodopsin (a light-driven chloride pump). Comparison of these systems is expected to reveal structure/function relationships in these simple (primitive?) energy transducing membrane components and evolutionary relationships which had produced the structural features which allow the divergent functions. Findings indicate that very different primary structures are needed for these proteins to accomplish their different functions. Indeed, analysis of partial amino acid sequences from halo-opsin shows already that few if any long segments exist which are homologous to bacterio-opsin. Either these proteins diverged a very long time ago to allow for the observed differences, or the evolutionary clock in the halobacteria runs faster than usual.

Lanyi, J. K.↗

Leveraging Multiproton-Coupled Electron Transfer to Improve Ir(III) Photocatalyst Efficiency

In photoredox reactions, charge recombination (CR) limits quantum yields, hindering the efficient conversion of light energy into catalytic activity. To address this, we drew inspiration from redox relays in photosystem II (PSII) and developed a new series of iridium(III) complexes featuring covalently attached benzimidazole-phenol-pyridine (BIP-Py) groups to facilitate intramolecular multiproton-coupled electron transfer (MPCET). Herein, we evaluate the effects of MPCET through an extended and well-defined hydrogen-bond network to improve photocatalytic activity and mitigate rapid charge recombination. Infrared spectroelectrochemistry reveals pyridine protonation upon phenol oxidation, while visible spectroelectrochemistry and transient absorption spectroscopy confirm the electro- and photochemical formation of chargeseparated states (CSS) involving oxidized BIP, resulting from intramolecular proton-coupled electron transfer (PCET). The application of the BIP-Py platform in a photocatalytic Nhydroxyphthalimide ester reduction reaction resulted in a ∼106-fold reduction in CR rate and a quantum yield enhancement of up to 157%. Our findings suggest that incorporating MPCET-based redox relays into photocatalyst frameworks is an effective strategy to enhance the efficiency of photocatalytic systems.

Catalysts↗

The solar wind ionization state as a coronal temperature diagnostic

The 'frozen' solar wind ionization state within a few solar radii of the photosphere suggests that ion measurements at 1 AU may yield information on the electron temperature conditions at the base of the coronal expansion. The freezing-in process is examined in light of traditional assumptions as to coronal expansion, where electron temperature decreases monotonically with height, the bulk flow of all charge states of a given ion species are equal to the proton speed, and the ion outflow is spherically symmetric. The consequences of the relaxation of these assumptions include the underestimation of the magnitude of a temperature maximum occurring near the freezing-in radius. Because it is associated with high speed, low density flow, an areal divergence that is faster than that in a spherical outflow lowers the ionization state freezing-in level relative to that which is typical in spherically symmetric expansion.

Owocki, S. P.↗

Protein changes associated with reprotonation of the Schiff base in the photocycle of Asp96-->Asn bacteriorhodopsin. The MN intermediate with unprotonated Schiff base but N-like protein structure

The difference Fourier transform infrared spectrum for the N intermediate in the photoreaction of the light-adapted form of bacteriorhodopsin can be recorded at pH 10 at 274 K (Pfefferle, J.-M., Maeda, A., Sasaki, J., and Yoshizawa, T. (1991) Biochemistry 30, 6548-6556). Under these conditions, Asp96-->Asn bacteriorhodopsin gives a photoproduct which shows changes in protein structure similar to those observed in N of wild-type bacteriorhodopsin. However, decreased intensity of the chromophore bands and the single absorbance maximum at about 400 nm indicate that the Schiff base is unprotonated, as in the M intermediate. This photoproduct was named MN. At pH 7, where the supply of proton is not as restricted as at pH 10, Asp96-->Asn bacteriorhodopsin yields N with a protonated Schiff base. The Asn96 residue, which cannot deprotonate as Asp96 in wild-type bacteriorhodopsin, is perturbed upon formation of both MN at pH 10 and N at pH 7. We suggest that the reprotonation of the Schiff base is preceded by a large change in the protein structure including perturbation of the residue at position 96.

Non-NASA Center↗

Passive dosimetry aboard the Mir Orbital Station: internal measurements

Passive radiation dosimeters were exposed aboard the Mir Orbital Station over a substantial portion of the solar cycle in order to measure the change in dose and dose equivalent rates as a function of time. During solar minimum, simultaneous measurements of the radiation environment throughout the habitable volume of the Mir were made using passive dosimeters in order to investigate the effect of localized shielding on dose and dose equivalent. The passive dosimeters consisted of a combination of thermoluminescent detectors to measure absorbed dose and CR-39 PNTDs to measure the linear energy transfer (LET) spectrum from charged particles of LET infinity H2O > or = 5 keV/micrometers. Results from the two detector types were then combined to yield mean total dose rate, mean dose equivalent rate, and average quality factor. Contrary to expectations, both dose and dose equivalent rates measured during May-October 1991 near solar maximum were higher than similar measurements carried out in 1996-1997 during solar minimum. The elevated dose and dose equivalent rates measured in 1991 were probably due to a combination of intense solar activity, including a large solar particle event on 9 June 1991, and the temporary trapped radiation belt created in the slot region by the solar particle event and ensuing magnetic storm of 24 March 1991. During solar minimum, mean dose and dose equivalent rates were found to vary by factors of 1.55 and 1.37, respectively, between different locations through the interior of Mir. More heavily shielded locations tended to yield lower total dose and dose equivalent rates, but higher average quality factor than did more lightly shielding locations. However, other factors such as changes in the immediate shielding environment surrounding a given detector location, changes in the orientation of the Mir relative to its velocity vector, and changes in the altitude of the station also contributed to the variation. Proton and neutron-induced target fragment secondaries, not primary galactic cosmic rays, were found to dominate the LET spectrum above 100 keV/micrometers. This indicates that in low earth orbit, trapped protons in the South Atlantic Anomaly are responsible for the major fraction of the total dose equivalent. c2002 Elsevier Science Ltd. All rights reserved.

NASA Experiment Number 9401620↗

Light (anti)nuclei production in Pb-Pb collisions at s N N = 5.02 TeV

The measurement of the production of deuterons, tritons and 3 He and their antiparticles in Pb-Pb collisions at $\sqrt{s_{NN}}$= 5.02 TeV is presented in this article. The measurements are carried out at midrapidity (|y| < 0.5) as a function of collision centrality using the ALICE detector. The p T -integrated yields, the coalescence parameters and the ratios to protons and antiprotons are reported and compared with nucleosynthesis models. The comparison of these results in different collision systems at different center-of-mass collision energies reveals a suppression of nucleus production in small systems. In the Statistical Hadronisation Model framework, this can be explained by a small correlation volume where the baryon number is conserved, as already shown in previous fluctuation analyses. However, a different size of the correlation volume is required to describe the proton yields in the same data sets. The coalescence model can describe this suppression by the fact that the wave functions of the nuclei are large and the fireball size starts to become comparable and even much smaller than the actual nucleus at low multiplicities.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Improved description of light nuclei through chiral effective field theory at leading order

Here, we propose an arrangement of the most commonly invoked version of the two-nucleon chiral potential such that the low-lying amplitude zero of the 1 S 0 partial wave is captured at leading order of the effective expansion. Adopting other partial waves from the LENPIC interaction, we show how this modification yields an improved description of ground-state energies and point-proton radii of the 3 H, 4 He, and 6 He nuclei.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

A Comparison of High Intensity Proton Efficiencies for Rf Harmonics 1 and 2

There have been many changes to the Booster setup over the past seven years, but the most fundamental physical change is probably the change from an Rf harmonic of 2 to 1. By looking at the intensity data over this period it is possible to compare the running efficiencies in each case. The harmonic change occurred at the beginning of the 1998 run. Another fundamental, though administrative, change that occurred after the 1998 run was the advent of ALARA alarms that limit the amount of beam loss that is allowed to occur during different parts of the cycle. These ALARA alarm limits also depend on the AGS repetition period since it is the amount of beam energy lost per unit time that is used as the criterion for these alarms. The 1998 h=1 run did not have an ALARA constraint, but subsequent h=1 runs did have that constraint. The highest Booster proton intensity was obtained in the h=2 mode (about 23 Tp). At best, the h=1 mode only yielded about 20 Tp per cycle. Is it because the h=2 setup can produce higher intensity than the h=1 setup that the h=2 intensity was higher, or is it because other factors are responsible? This note seeks to shed some light on this question. In order to compare the two setups (h=1 vs. h=2) intensity scaler data was taken from the setup books over the past seven years. In general, this data was taken when the Booster was in an optimized state. What ‘optimized’ means is not so clearly defined, but would typically mean that the Booster configuration was ‘optimized’ so that it yields the highest intensity late in the AGS given physical and other constraints.

43 PARTICLE ACCELERATORS↗

Single-Crystal Polycationic Polymers Obtained by Single-Crystal-to-Single-Crystal Photopolymerization

The efficient preparation of single-crystalline ionic polymers and fundamental understanding of their structure–property relationships at the molecular level remains a challenge in chemistry and materials science. Herein, we observe the single-crystal structure of a highly ordered polycationic polymer (polyelectrolyte) and its proton conductivity. The polyelectrolyte single crystals can be prepared on a gram-scale in quantitative yield, by taking advantage of an ultraviolet/sunlight-induced topochemical polymerization, from a tricationic monomer—a self-complementary building block possessing a preorganized conformation. A single-crystal-to-single-crystal photopolymerization was revealed unambiguously by in situ single-crystal X-ray diffraction analysis, which was also employed to follow the progression of molecular structure from the monomer, to a partially polymerized intermediate, and, finally, to the polymer itself. Collinear polymer chains are held together tightly by multiple Coulombic interactions involving counterions to form two-dimensional lamellar sheets (1 nm in height) with sub-nanometer pores (5 Å). The polymer is extremely stable under 254 nm light irradiation and high temperature (above 500 K). The extraordinary mechanical strength and environmental stability—in combination with its impressive proton conductivity (~3 × 10 –4 S cm –1 )—endow the polymer with potential applications as a robust proton-conducting material. By marrying supramolecular chemistry with macromolecular science, the outcome represents a major step toward the controlled synthesis of single-crystalline polyelectrolyte materials with perfect tacticity.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Direct-photon production in inelastic and high-multiplicity proton–proton collisions at $\sqrt{s}$ = 13 TeV

In this letter, we present the first measurement of direct photons at the transverse momentum of 1 < 𝑝 T < 6 GeV/𝑐 at midrapidity 𝜂 < 0.8 in inelastic and high-multiplicity proton–proton collisions at a centre-of-mass energy of $\sqrt{s}$ = 13 TeV. The fraction of virtual direct photons in the inclusive virtual photon spectrum is obtained from a fit to the dielectron invariant mass spectrum. In the limit of zero invariant mass, this fraction is equal to the relative contribution of real direct photons in the inclusive real photon spectrum. Contributions from decays of light- flavour neutral mesons are estimated using independent measurements in proton–proton collisions at the same energy and the same event class. For the first time at the LHC energies, a direct-photon signal is observed at low 𝑝T in both inelastic and high-multiplicity event classes, with a significance of 3.2𝜎 and 1.9𝜎 in terms of standard deviations, correspondingly. The yield of direct photons in inelastic pp collisions is compared to perturbative QCD calculations. The integrated photon yield is studied as a function of charged-particle multiplicity and is compared to the results from other experiments and theoretical calculations. The results show a significant increase of direct- photon yield with charged-particle multiplicity.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Neutron detection and application with a novel 3D-projection scintillator tracker in the future long-baseline neutrino oscillation experiments

Neutrino oscillation experiments require a precise measurement of the neutrino energy. However, the kinematic detection of the final-state neutron in the neutrino interaction is missing in current neutrino oscillation experiments. The missing neutron kinematic detection results in a smaller detected neutrino energy than the true neutrino energy. A novel 3D-projection scintillator tracker, which consists of roughly ten million active cubes covered with an optical reflector, is capable of measuring the neutron kinetic energy and direction on an event-by-event basis using the time-of-flight technique thanks to the fast timing, fine granularity, and high light yield. The $\overline{v}$ μ interactions tend to produce neutrons in the final state. By measuring the neutron kinetic energy, the $\overline{v}$ μ energy can be reconstructed better, allowing a tighter incoming neutrino flux constraint. This article shows the detector's ability to reconstruct neutron kinetic energy and the $\overline{v}$ μ flux constraint achieved by selecting the charged-current interactions without mesons or protons in the final state.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Fast Muon Capture Monitoring in Mu2e with the CAPHRI Detector

The Mu2e experiment at Fermilab will search for the charged lepton flavor violating (CLFV) process of a neutrinoless muon-to-electron conversion in the field of an aluminum nucleus. Reaching the experiment’s target sensitivity requires precise normalization of the physics signal through accurate monitoring of the muon capture rate on the stopping target. For this purpose, the Calorimeter Precise High-Resolution Intensity detector (CAPHRI) has been developed. The detector is composed of four LYSO crystals installed in the upstream disk of the Mu2e calorimeter and read out with the standard calorimeter readout. CAPHRI measures the muon capture rate by detecting the characteristic 1.8~MeV gamma emission line of the $^{27}Al(\mu^−, \nu n \gamma) ^{26}Mg$ nuclear reaction. The fast, precise response enables injection-by-injection monitoring of proton beam intensity fluctuations. We report on the commissioning and performance characterization of CAPHRI. The response of each channel is calibrated at two SiPM overvoltages using both the intrinsic self-emission of the LYSO crystals and cosmic ray signals. In parallel, Monte Carlo simulations are used to evaluate the detector acceptance and the expected signal-to-background ratio under realistic running conditions. Preliminary results show a crystal light yield consistent with expectations and a channel inter-calibration at the 2--4% level. Simulation studies indicate that the detector acceptance and background rejection satisfy the requirements for physics operations, with about 1000 detected events per beam injection at a beam power of 1.5~kW. These results demonstrate that CAPHRI is an effective tool for beam monitoring and signal normalization in Mu2e.

Ciccarella, V. [Frascati; U. Rome La Sapienza (mai↗

Polymorphism and Optoelectronic Properties in Crystalline Supramolecular Polymers

Supramolecular polymers can emulate some of the physical properties of covalent polymers but offer new opportunities given the possibility of designing monomers that will form highly ordered assemblies with defined shapes. Internally ordered supramolecular polymers formed through nucleation–elongation self-assembly are well-known but highly crystalline examples which exhibit important properties such as light harvesting, charge transport, and ferroelectricity are not common. We report here on a detailed study of supramolecular polymers formed in water by carboxylated naphtho-p-quinodimethane amphiphiles. We found that supramolecular polymerization of these amphiphiles in aqueous media yields crystalline assemblies with morphologies that included ribbons, helically rolled ribbons, and twisted filaments. This polymorphism was found to be controlled exclusively by repulsive electrostatic interactions controlled by the degree of protonation of the carboxylic head groups which also dictates the nature of supramolecular packing. Substoichiometric amounts of base lead to highly crystalline ribbons due to a decreased surface charge density and less electrostatic repulsion. Increasing deprotonation results in helically rolled ribbons with a different polymorph crystal lattice, whereas excessive deprotonation leads to twisted filaments with maximum surface charge density. Ribbons, helical rolled ribbons, and twisted filaments revealed an increasing red shift in their visible absorption maxima. These crystalline assemblies could be potential candidates for solar energy materials and photocatalytic systems.

36 MATERIALS SCIENCE↗

Light nuclei production in a multiphase transport model for relativistic heavy ion collisions

Based on an enhanced multiphase transport (AMPT) model, which gives a good description of proton production with a smooth quark matter to hadronic matter transition in relativistic heavy ion collisions, we study deuteron and triton productions from the coalescence of nucleons at the kinetic freezeout of these collisions. For central Au + Au collisions at center-of-mass energies √s NN from 7.7 GeV to 200 GeV available at the Relativistic Heavy Ion Collider (RHIC), we find that the yield ratio N t N p /N$^2_d$ of proton, deuteron, and triton is a monotonic function of collision energy. Our study confirms the results from similar studies based on different dynamic model, which have either no phase transition or a crossover transition between the quark-gluon plasma and the hadronic matter, that this yield ratio does not show any nonmonotonic behavior in its collision-energy dependence.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Eta Fragmentation Functions Revisited

We revisit the extraction of parton-to-eta meson fragmentation functions at next-to-leading order accuracy in QCD in the light of the recent hadroproduction measurements in proton-proton collisions obtained by the PHENIX, LHCb, and ALICE collaborations. In addition to an increased precision, the data explore complementary rapidity ranges and center-of-mass system energies. The analysis exploits the theoretical scale dependence to ease tensions among the data sets at different energies that are potentially caused by QCD corrections beyond the next-to-leading order. The resulting set of fragmentation functions yields a consistent description of all available data. Estimates of uncertainties are obtained with the Monte Carlo replica method.

FOS: Physical sciences↗

Flow properties of the solar wind obtained from white light data and a two-fluid model

The flow properties of the solar wind from 1 R(sub s) to 1 AU were obtained using a two fluid model constrained by density and scale height temperatures derived from white light observations, as well as knowledge of the electron temperature in coronal holes. The observations were obtained with the white light coronographs on SPARTAN 201-1 and at Mauna Loa (Hawaii), in a north polar coronal hole from 1.16 to 5.5 R(sub s) on 11 Apr. 1993. By specifying the density, temperature, Alfven wave velocity amplitude and heating function at the coronal base, it was found that the model parameters fit well the constraints of the empirical density profiles and temperatures. The optimal range of the input parameters was found to yield a higher proton temperature than electron temperature in the inner corona. The results indicate that no preferential heating of the protons at larger distances is needed to produce higher proton than electron temperatures at 1 AU, as observed in the high speed solar wind.

Habbal, Shadia Rifai↗

Transverse-momentum and event-shape dependence of D-meson flow harmonics in Pb–Pb collisions at s NN = 5.02 TeV

The elliptic and triangular flow coefficients v 2 and v 3 of prompt D 0 , D + , and D * + mesons were measured at midrapidity ( | y | < 0.8 ) in Pb–Pb collisions at the centre-of-mass energy per nucleon pair of s NN = 5.02 TeV with the ALICE detector at the LHC. The D mesons were reconstructed via their hadronic decays in the transverse momentum interval 1 < p T < 36 GeV / c in central (0–10%) and semi-central (30–50%) collisions. Compared to pions, protons, and J / ψ mesons, the average D-meson v n harmonics are compatible within uncertainties with a mass hierarchy for p T ≲ 3 GeV / c , and are similar to those of charged pions for higher p T . The coupling of the charm quark to the light quarks in the underlying medium is further investigated with the application of the event-shape engineering (ESE) technique to the D-meson v 2 and p T -differential yields. The D-meson v 2 is correlated with average bulk elliptic flow in both central and semi-central collisions. Within the current precision, the ratios of per-event D-meson yields in the ESE-selected and unbiased samples are found to be compatible with unity. All the measurements are found to be reasonably well described by theoretical calculations including the effects of charm-quark transport and the recombination of charm quarks with light quarks in a hydrodynamically expanding medium.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗